1T77A

Crystal structure of the ph-beach domains of human lrba/bgl
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
414
structure length
414
Chain Sequence
GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of the PH-BEACH Domains of Human LRBA/BGL
pubmed doi rcsb
source organism Homo sapiens
molecule tags Signaling protein
molecule keywords Lipopolysaccharide-responsive and beige-like anchor protein
total genus 124
structure length 414
sequence length 414
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2004-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02138 Beach Beige/BEACH domain
A PF14844 PH_BEACH PH domain associated with Beige/BEACH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1540.10 Mainly Alpha Orthogonal Bundle Neurobeachin; Chain: A, domain 1 BEACH domain 1t77A02
2.30.29.40 Mainly Beta Roll PH-domain like PH domain-like; domain 1 1t77A01
1T77A 1MI1A
chains in the Genus database with same CATH superfamily
5GOWB 4F7GA 1V61A 4HATB 4YONA 1FGZA 1T77A 1DBHA 2DKQA 2Z59A 4DX8A 2Z0QA 5D3WA 5KQ1A 4KVGB 4GXBA 2RNRB 3NWAA 3SUZA 2L1CA 1P6SA 2EMTA 3D8FA 2DX1A 3GYOA 3DCXA 4HAWB 2YT2A 4CHMA 3AJ4A 4YL8A 1EAZA 5DHAB 2CY4A 5KQ4A 4B6HA 1UPRA 3PG7A 2R2YA 1FAOA 4WVFB 1MPHA 3OHMB 4QJ4B 2N23A 3KSYA 2DLWA 2KUPA 2KR0A 5HE2A 2OTXA 2YS5A 1DYNA 2GS0A 4DIXA 4QJ3B 2Z0OA 5D3YA 3ULBA 1BWNA 4OSNA 5I2MA 2R0DA 2IYBA 1FGYA 1TJ6A 1M7RA 5DI9B 3FM8C 5DIFB 5LG4B 3NWDA 4P7IA 1FHWA 1X11A 2Q13A 1NTYA 1EF1A 1GG3A 2K00A 3ODOA 3A8PA 4ZRIA 3A8QA 5C16A 1GC6A 2J0JA 1XKEA 5D3VA 4L6EA 1BTNA 4DBBA 3UZTA 4HB4B 3P6AA 4EKUA 1LB1A 1WGQA 4KHBA 4HAZB 3A98B 2D2QA 2LULA 2EJ8A 3U7DA 1AQCA 4KAXB 4A6FB 1WG7A 2L2IA 1EGXA 3AU4A 2LG1A 3DXEA 1TQZA 1FB8A 4KHBB 4GMVA 3A58A 2RRFA 3TVVA 1TXDA 5FI1A 2GCJA 1MK9B 1V88A 2IFSA 2MKRA 3IVFA 3KRWA 1NI2A 3NWFA 4HB2B 3WYFB 4A6KA 1DDVA 4BBKA 1N3HA 2NMBA 1U29A 3AU5A 5JP4A 1U27A 4IAPA 2RGNB 5J3TA 3CXBB 3F0WA 3HQCA 2ROZB 3QIJA 1MIZB 4HHVA 2RVBB 2GJYA 5HE3A 2LOZA 1W1HA 1FHOA 2EMSA 4KHOA 4WSFA 2G35A 4HSIA 3B77A 2I5FA 4Y94A 4TYZA 2K2JA 4K17A 2DYQA 2ROVA 2UVMA 4HAYB 4K2PA 3FSSA 2J0MA 1PMSA 3TO1A 2Y8FA 5J3YA 2OQBA 1K5DB 1KZGA 3CIKA 3PSCA 2Y7BA 3N7CA 2XQNM 2KIGA 1DDWA 2PZ1A 1IRSA 1MI1A 2NBVA 1X1GA 5C5BB 2W2XC 2D9YA 4HAUB 5M4YB 3SNHA 3KZ1A 2VRWB 2J0KA 4IOYX 2P0HA 4EJNA 2YRYA 3T06A 2KUQA 3PEGA 4D6WA 2FJUB 1NTVA 2D11A 3MPXA 2YT0A 3SO6A 1BTKA 3F5RA 2H7EA 1ZSQA 4QXAB 4F7UP 5CLQB 3ZVRA 1UNQA 4A6HA 1Y19B 2YT1A 1BAKA 2GCLA 5C6RA 4OT1A 4Z2NA 5L81A 2V76A 3PZDA 1Y5OA 2CRFA 1MKEA 2M14A 2K49A 3V5WA 1MIXA 4PNKA 2YF0A 4F7HA 1GC7A 2RUKB 5D3XA 1WGUA 2ZPYA 3QWMA 4HB3B 4HDOA 4HAVB 4NSWA 3G9WA 2W2WA 2K8EA 2J59M 2N0YA 2W2XD 1P3RA 5LONB 1K5GB 1H10A 3U8ZA 4HAXB 1B55A 3MDBC 3TW1A 1FOEA 4NY0A 1P5TA 2ELBA 1DDMA 1SGHA 2JP2A 3M1IB 1I7AA 4GPTB 4GZUA 4PQ0A 1PLSA 3D8EA 1W1GA 3DXDA 1WI1A 3NSUA 3BJIA 1I2HA 4GOUA 2DHKA 5DH9B 1LW3A 2UZSA 2H7DA 3TCAA 1M7EA 5C5BA 1OY2A 2I5CA 2COCA 1KI1B 1W1DA 2YSZA 1X05A 1WJ1A 1RRPB 1ZC4B 5D27A 5LOPB 2MWNB 2EC1A 2FJLA 2D10A 3O96A 4DX90 2VKIA 1J0WA 3P7ZA 3KRXA 4WJ7A 2HE7A 4C0AA 1U2BA 1U5GA 3ULCA 2CY5A 1UNRA 3PVUA 5KCVA 1V5UA 1MAIA 4MT7A 1XD4A 2DX5A 2I1JA 1XODA 3PVLA 1MK7B 1H4RA 1V5MA 4L1RA 2Z0PA 5HE1A 3GYPA 1XR0B 2YS3A 3DXCA 2P0DA 4A6FA 3D8DA 2BCJA 1X86A 2Z13A 4A5KA 3HIEA 2CAYA 4GNKB 2KCJA 4HDQA 5JHHA 5C79A 2COAA 1NU2A 1QQGA 1AWEA 1WJMA 3ODXA 2LOXA 1ZYIA 2QKLA 3SV1A 1UPQA 4CYEA 1ZVRA 1ZC3B 5EFXA 5JLJB 3VOQA 2DYNA 1J19A 5IRSA 2DKPA 1KZ7A 2DFKA 3HK0A 4K2OA 1XCGA 1QC6A 2DHIA 4CHJA 4QJ5B 5J3QA 5CLLB 3U12A 1UEFA 4KHAA 1Q67A 1EVHA 2COFA 3HW2B 4MK0A 4MY6A 1DROA 5FI0A 2Z4DA 2D9VA 2AL6A 3ML4A 1FHXA 1SHCA 2KIEA 2MDXA 1U5EA 2RLOA 3ZDTA 3ODWA 4H8SA 2LKOA 1XX0A 4GMXB 3WA0A 1RJ2A 4XWXA 1OMWA 2D9ZA 2Y8GA 2I1KA 2RSGA 1UNPA 4Z2MB 2LYDA 4ZRKA 2Z14A 4IFSA 4GN1A 2NZ8B 3FVCA 2DHJA 1X1FA 4EMOA 1OQNA 3OANA 4CSQA 3KY9A 2E2XA 3PP2A 4DXAB 3BINA 5HE0A 2P0FA 2R09A 2YVCA 4TKNA 2GUMA 2UZRA 2MFQA 1Z87A 2D9XA 2K2UA 2YS1A 3X23A 5I2SA 3VIAA 2HTHB 3PVWA 3NW8A 3SYXA 3LJUX 1U5DA 1V5PA 2D4QA 2KGXB 1WVHA 1ZM0A 5JHGA 3TFMA 4HB0B 2DTCA 1V89A 4K81A 2QKMA 1E5WA 1U5FA 2DA0A 1ISNA 2ELAA 2X18A 4ZRJA 3HSAA 3QBVB 1PFJA 2P8VA 2VSZA 5DHFB 2M38A 3FEHA 4D0NB 2ZKMX 2ADZA 3RCPA 2CODA 2AEHA 2D9WA 2DN6A
chains in the Genus database with same CATH topology
1T77A 1MI1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T77 A;  1MI1 A; 
#chains in the Genus database with same CATH topology
 5GOW B;  4F7G A;  1V61 A;  4HAT B;  4YON A;  1FGZ A;  1T77 A;  1DBH A;  2DKQ A;  2Z59 A;  4DX8 A;  2Z0Q A;  5D3W A;  5KQ1 A;  4KVG B;  4GXB A;  2RNR B;  3NWA A;  3SUZ A;  2L1C A;  1P6S A;  2EMT A;  3D8F A;  2DX1 A;  3GYO A;  3DCX A;  4HAW B;  2YT2 A;  4CHM A;  3AJ4 A;  4YL8 A;  1EAZ A;  5DHA B;  2CY4 A;  5KQ4 A;  4B6H A;  1UPR A;  3PG7 A;  2R2Y A;  1FAO A;  4WVF B;  1MPH A;  3OHM B;  4QJ4 B;  2N23 A;  3KSY A;  2DLW A;  2KUP A;  2KR0 A;  5HE2 A;  2OTX A;  2YS5 A;  1DYN A;  2GS0 A;  4DIX A;  4QJ3 B;  2Z0O A;  5D3Y A;  3ULB A;  1BWN A;  4OSN A;  5I2M A;  2R0D A;  2IYB A;  1FGY A;  1TJ6 A;  1M7R A;  5DI9 B;  3FM8 C;  5DIF B;  5LG4 B;  3NWD A;  4P7I A;  1FHW A;  1X11 A;  2Q13 A;  1NTY A;  1EF1 A;  1GG3 A;  2K00 A;  3ODO A;  3A8P A;  4ZRI A;  3A8Q A;  5C16 A;  1GC6 A;  2J0J A;  1XKE A;  5D3V A;  4L6E A;  1BTN A;  4DBB A;  3UZT A;  4HB4 B;  3P6A A;  4EKU A;  1LB1 A;  1WGQ A;  4KHB A;  4HAZ B;  3A98 B;  2D2Q A;  2LUL A;  2EJ8 A;  3U7D A;  1AQC A;  4KAX B;  4A6F B;  1WG7 A;  2L2I A;  1EGX A;  3AU4 A;  2LG1 A;  3DXE A;  1TQZ A;  1FB8 A;  4KHB B;  4GMV A;  3A58 A;  2RRF A;  3TVV A;  1TXD A;  5FI1 A;  2GCJ A;  1MK9 B;  1V88 A;  2IFS A;  2MKR A;  3IVF A;  3KRW A;  1NI2 A;  3NWF A;  4HB2 B;  3WYF B;  4A6K A;  1DDV A;  4BBK A;  1N3H A;  2NMB A;  1U29 A;  3AU5 A;  5JP4 A;  1U27 A;  4IAP A;  2RGN B;  5J3T A;  3CXB B;  3F0W A;  3HQC A;  2ROZ B;  3QIJ A;  1MIZ B;  4HHV A;  2RVB B;  2GJY A;  5HE3 A;  2LOZ A;  1W1H A;  1FHO A;  2EMS A;  4KHO A;  4WSF A;  2G35 A;  4HSI A;  3B77 A;  2I5F A;  4Y94 A;  4TYZ A;  2K2J A;  4K17 A;  2DYQ A;  2ROV A;  2UVM A;  4HAY B;  4K2P A;  3FSS A;  2J0M A;  1PMS A;  3TO1 A;  2Y8F A;  5J3Y A;  2OQB A;  1K5D B;  1KZG A;  3CIK A;  3PSC A;  2Y7B A;  3N7C A;  2XQN M;  2KIG A;  1DDW A;  2PZ1 A;  1IRS A;  1MI1 A;  2NBV A;  1X1G A;  5C5B B;  2W2X C;  2D9Y A;  4HAU B;  5M4Y B;  3SNH A;  3KZ1 A;  2VRW B;  2J0K A;  4IOY X;  2P0H A;  4EJN A;  2YRY A;  3T06 A;  2KUQ A;  3PEG A;  4D6W A;  2FJU B;  1NTV A;  2D11 A;  3MPX A;  2YT0 A;  3SO6 A;  1BTK A;  3F5R A;  2H7E A;  1ZSQ A;  4QXA B;  4F7U P;  5CLQ B;  3ZVR A;  1UNQ A;  4A6H A;  1Y19 B;  2YT1 A;  1BAK A;  2GCL A;  5C6R A;  4OT1 A;  4Z2N A;  5L81 A;  2V76 A;  3PZD A;  1Y5O A;  2CRF A;  1MKE A;  2M14 A;  2K49 A;  3V5W A;  1MIX A;  4PNK A;  2YF0 A;  4F7H A;  1GC7 A;  2RUK B;  5D3X A;  1WGU A;  2ZPY A;  3QWM A;  4HB3 B;  4HDO A;  4HAV B;  4NSW A;  3G9W A;  2W2W A;  2K8E A;  2J59 M;  2N0Y A;  2W2X D;  1P3R A;  5LON B;  1K5G B;  1H10 A;  3U8Z A;  4HAX B;  1B55 A;  3MDB C;  3TW1 A;  1FOE A;  4NY0 A;  1P5T A;  2ELB A;  1DDM A;  1SGH A;  2JP2 A;  3M1I B;  1I7A A;  4GPT B;  4GZU A;  4PQ0 A;  1PLS A;  3D8E A;  1W1G A;  3DXD A;  1WI1 A;  3NSU A;  3BJI A;  1I2H A;  4GOU A;  2DHK A;  5DH9 B;  1LW3 A;  2UZS A;  2H7D A;  3TCA A;  1M7E A;  5C5B A;  1OY2 A;  2I5C A;  2COC A;  1KI1 B;  1W1D A;  2YSZ A;  1X05 A;  1WJ1 A;  1RRP B;  1ZC4 B;  5D27 A;  5LOP B;  2MWN B;  2EC1 A;  2FJL A;  2D10 A;  3O96 A;  4DX9 0;  2VKI A;  1J0W A;  3P7Z A;  3KRX A;  4WJ7 A;  2HE7 A;  4C0A A;  1U2B A;  1U5G A;  3ULC A;  2CY5 A;  1UNR A;  3PVU A;  5KCV A;  1V5U A;  1MAI A;  4MT7 A;  1XD4 A;  2DX5 A;  2I1J A;  1XOD A;  3PVL A;  1MK7 B;  1H4R A;  1V5M A;  4L1R A;  2Z0P A;  5HE1 A;  3GYP A;  1XR0 B;  2YS3 A;  3DXC A;  2P0D A;  4A6F A;  3D8D A;  2BCJ A;  1X86 A;  2Z13 A;  4A5K A;  3HIE A;  2CAY A;  4GNK B;  2KCJ A;  4HDQ A;  5JHH A;  5C79 A;  2COA A;  1NU2 A;  1QQG A;  1AWE A;  1WJM A;  3ODX A;  2LOX A;  1ZYI A;  2QKL A;  3SV1 A;  1UPQ A;  4CYE A;  1ZVR A;  1ZC3 B;  5EFX A;  5JLJ B;  3VOQ A;  2DYN A;  1J19 A;  5IRS A;  2DKP A;  1KZ7 A;  2DFK A;  3HK0 A;  4K2O A;  1XCG A;  1QC6 A;  2DHI A;  4CHJ A;  4QJ5 B;  5J3Q A;  5CLL B;  3U12 A;  1UEF A;  4KHA A;  1Q67 A;  1EVH A;  2COF A;  3HW2 B;  4MK0 A;  4MY6 A;  1DRO A;  5FI0 A;  2Z4D A;  2D9V A;  2AL6 A;  3ML4 A;  1FHX A;  1SHC A;  2KIE A;  2MDX A;  1U5E A;  2RLO A;  3ZDT A;  3ODW A;  4H8S A;  2LKO A;  1XX0 A;  4GMX B;  3WA0 A;  1RJ2 A;  4XWX A;  1OMW A;  2D9Z A;  2Y8G A;  2I1K A;  2RSG A;  1UNP A;  4Z2M B;  2LYD A;  4ZRK A;  2Z14 A;  4IFS A;  4GN1 A;  2NZ8 B;  3FVC A;  2DHJ A;  1X1F A;  4EMO A;  1OQN A;  3OAN A;  4CSQ A;  3KY9 A;  2E2X A;  3PP2 A;  4DXA B;  3BIN A;  5HE0 A;  2P0F A;  2R09 A;  2YVC A;  4TKN A;  2GUM A;  2UZR A;  2MFQ A;  1Z87 A;  2D9X A;  2K2U A;  2YS1 A;  3X23 A;  5I2S A;  3VIA A;  2HTH B;  3PVW A;  3NW8 A;  3SYX A;  3LJU X;  1U5D A;  1V5P A;  2D4Q A;  2KGX B;  1WVH A;  1ZM0 A;  5JHG A;  3TFM A;  4HB0 B;  2DTC A;  1V89 A;  4K81 A;  2QKM A;  1E5W A;  1U5F A;  2DA0 A;  1ISN A;  2ELA A;  2X18 A;  4ZRJ A;  3HSA A;  3QBV B;  1PFJ A;  2P8V A;  2VSZ A;  5DHF B;  2M38 A;  3FEH A;  4D0N B;  2ZKM X;  2ADZ A;  3RCP A;  2COD A;  2AEH A;  2D9W A;  2DN6 A; 
#chains in the Genus database with same CATH homology
 1T77 A;  1MI1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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