1T77A

Crystal structure of the ph-beach domains of human lrba/bgl
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
414
structure length
414
Chain Sequence
GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Lipopolysaccharide-responsive and beige-like anchor protein
publication title Crystal Structure of the PH-BEACH Domains of Human LRBA/BGL
pubmed doi rcsb
source organism Homo sapiens
molecule tags Signaling protein
total genus 124
structure length 414
sequence length 414
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2004-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02138 Beach Beige/BEACH domain
A PF14844 PH_BEACH PH domain associated with Beige/BEACH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1540.10 Mainly Alpha Orthogonal Bundle Neurobeachin; Chain: A, domain 1 BEACH domain 1t77A02
2.30.29.40 Mainly Beta Roll PH-domain like PH domain-like; domain 1 1t77A01
1T77A 1MI1A
chains in the Genus database with same CATH superfamily
5D3VA 2BCJA 5I2MA 3SV1A 4F7UP 4QJ3B 3AU5A 3OHMB 3SYXA 1MI1A 5IRSA 5C5BA 2W2XD 2H7DA 2I1KA 4EJNA 2IYBA 2RSGA 4CHJA 3P6AA 4IOYX 5C5BB 4A6KA 5J3YA 2GUMA 3DXDA 3ULCA 2N23A 4CYEA 2YVCA 1ZSQA 1GC6A 4HB0B 1WGQA 3D8DA 3PVLA 2Z14A 4DXAB 3PG7A 2DX1A 2FJLA 1H4RA 2LOXA 1XKEA 2D10A 1U29A 3BJIA 1FHOA 1KI1B 1M7EA 1MIXA 3ODOA 2D9ZA 1X11A 1Y19B 4WVFB 5DI9B 1QQGA 5CLLB 1AWEA 3F0WA 4GZUA 5DH9B 4Y94A 2CY5A 3TFMA 2D11A 4K17A 1XCGA 4KVGB 1UEFA 5JHGA 3QWMA 2MDXA 4GMVA 2D9WA 1V5UA 2RRFA 1BWNA 1U5GA 2N0YA 1DDMA 5JP4A 2I5FA 2M38A 1BTNA 1RRPB 3PVWA 2QKMA 1ZYIA 2KUQA 1P6SA 2HTHB 2HE7A 2W2XC 5HE1A 2GCLA 2LULA 3CXBB 5D27A 1V61A 5D3WA 2MFQA 1Q67A 3DXEA 2YS5A 2ZKMX 4WSFA 2KIEA 3KRWA 4NSWA 2M14A 1TQZA 1MAIA 2D2QA 1SGHA 3N7CA 3CIKA 3P7ZA 1GC7A 3SNHA 3ODWA 3HK0A 3HIEA 4YONA 3X23A 2I1JA 2YF0A 4HAWB 1MPHA 3NSUA 3A98B 1OY2A 3NW8A 1PLSA 2V76A 4HSIA 4K81A 2DHJA 2H7EA 4YL8A 2EMSA 4Z2MB 1GG3A 1U5EA 3HQCA 2AEHA 1M7RA 4Z2NA 3V5WA 3A8QA 3D8FA 3U7DA 4MY6A 5FI1A 1TXDA 2P0FA 5C79A 3KY9A 2QKLA 2CRFA 1W1GA 2KCJA 2P8VA 4KAXB 4TYZA 1ZC3B 1EF1A 3PVUA 2YSZA 4HDQA 1RJ2A 1EAZA 2NBVA 2R09A 2UVMA 3ZVRA 1DBHA 1FHWA 1DROA 3M1IB 1J19A 1V89A 1KZGA 1MK9B 3GYOA 2J0MA 3FEHA 1FAOA 2D9XA 2Z13A 1SHCA 1UNRA 3DXCA 4P7IA 5EFXA 3BINA 4KHOA 3RCPA 2GCJA 3MPXA 3UZTA 2J0JA 1U27A 1QC6A 3TO1A 1UPQA 2COCA 5GOWB 3IVFA 4HAZB 1K5GB 1IRSA 2EC1A 5DHFB 3F5RA 1T77A 1EVHA 4PNKA 2YT1A 1W1HA 2MWNB 2G35A 4OSNA 2DA0A 3B77A 2DHKA 3FVCA 4DX8A 5LG4B 2K00A 4D0NB 3ML4A 4EMOA 3QBVB 3VOQA 4KHBA 3HSAA 3PP2A 2K49A 2CAYA 5HE3A 2ADZA 1WGUA 4KHBB 1P3RA 1ZC4B 2OQBA 2YS3A 1V88A 5DHAB 4DX90 4QXAB 3SUZA 2DFKA 1UNPA 2I5CA 5C16A 3TCAA 2Z0QA 4GPTB 2EJ8A 2LOZA 2D4QA 2XQNM 2J59M 4TKNA 4OT1A 1X86A 2CY4A 4IAPA 1H10A 1DYNA 3A58A 3AU4A 1WI1A 2PZ1A 4PQ0A 4GN1A 2VKIA 1AQCA 1XX0A 2W2WA 2VSZA 4HAXB 4ZRIA 1FGYA 2COFA 1XR0B 2YT0A 4MT7A 2E2XA 2K8EA 3HW2B 2DKQA 1PMSA 2DX5A 1BTKA 2DTCA 5KCVA 2Y7BA 2Z4DA 5KQ4A 2NZ8B 1U5FA 2X18A 5C6RA 2UZSA 4H8SA 2D9YA 1NTVA 4ZRJA 2UZRA 4HB3B 1WG7A 2K2UA 3KSYA 4F7GA 4GOUA 3PSCA 4A5KA 2LKOA 1N3HA 2IFSA 2R2YA 2DYQA 3A8PA 2YS1A 1NI2A 1J0WA 1WJMA 3KRXA 3DCXA 1E5WA 1PFJA 1XD4A 2Z59A 4DIXA 5LOPB 1ZVRA 1EGXA 5J3QA 1LB1A 5LONB 4B6HA 1Z87A 1BAKA 2RUKB 2Z0PA 2JP2A 3FM8C 2R0DA 2COAA 4HB2B 4HATB 3U12A 4HHVA 1I2HA 2KGXB 1WVHA 2RNRB 3D8EA 1DDVA 1X05A 3LJUX 4A6FA 5JHHA 1OQNA 3ZDTA 4QJ4B 3GYPA 3WA0A 4KHAA 2Q13A 4A6FB 3ODXA 2P0HA 1FGZA 1MKEA 2RGNB 1K5DB 5I2SA 2AL6A 4K2PA 2ZPYA 2KUPA 1W1DA 3ULBA 3PEGA 1UPRA 4QJ5B 4CHMA 2DYNA 2DN6A 2D9VA 3NWDA 2YT2A 5HE0A 5CLQB 5J3TA 5M4YB 5D3XA 4L6EA 4A6HA 1FB8A 1U5DA 2ELBA 4K2OA 2L1CA 2MKRA 1X1GA 2GJYA 2CODA 1FHXA 2EMTA 1MIZB 2ROVA 3NWAA 1NTYA 2P0DA 4HDOA 5FI0A 3SO6A 2OTXA 2DLWA 4NY0A 3KZ1A 4XWXA 2DHIA 1OMWA 2RLOA 2L2IA 1Y5OA 1TJ6A 4WJ7A 1LW3A 2KR0A 3TVVA 1ZM0A 2Z0OA 2ELAA 1DDWA 4F7HA 1X1FA 1XODA 2KIGA 3AJ4A 2GS0A 2Y8GA 2LYDA 5L81A 4L1RA 1FOEA 2RVBB 4HAUB 5KQ1A 1UNQA 3T06A 1V5PA 4C0AA 4HB4B 2Y8FA 4GXBA 3MDBC 5HE2A 1MK7B 2FJUB 1ISNA 1I7AA 4MK0A 2ROZB 4DBBA 3NWFA 1NU2A 5DIFB 3G9WA 1B55A 4IFSA 3O96A 4GMXB 4EKUA 3QIJA 3TW1A 1P5TA 2J0KA 3WYFB 2YRYA 3OANA 3FSSA 1KZ7A 3U8ZA 1U2BA 2K2JA 4HAVB 1WJ1A 3PZDA 2VRWB 4GNKB 5JLJB 2DKPA 3VIAA 4ZRKA 4CSQA 4BBKA 1V5MA 2NMBA 5D3YA 2LG1A 4D6WA 4HAYB
chains in the Genus database with same CATH topology
1T77A 1MI1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T77 A;  1MI1 A; 
#chains in the Genus database with same CATH topology
 5D3V A;  2BCJ A;  5I2M A;  3SV1 A;  4F7U P;  4QJ3 B;  3AU5 A;  3OHM B;  3SYX A;  1MI1 A;  5IRS A;  5C5B A;  2W2X D;  2H7D A;  2I1K A;  4EJN A;  2IYB A;  2RSG A;  4CHJ A;  3P6A A;  4IOY X;  5C5B B;  4A6K A;  5J3Y A;  2GUM A;  3DXD A;  3ULC A;  2N23 A;  4CYE A;  2YVC A;  1ZSQ A;  1GC6 A;  4HB0 B;  1WGQ A;  3D8D A;  3PVL A;  2Z14 A;  4DXA B;  3PG7 A;  2DX1 A;  2FJL A;  1H4R A;  2LOX A;  1XKE A;  2D10 A;  1U29 A;  3BJI A;  1FHO A;  1KI1 B;  1M7E A;  1MIX A;  3ODO A;  2D9Z A;  1X11 A;  1Y19 B;  4WVF B;  5DI9 B;  1QQG A;  5CLL B;  1AWE A;  3F0W A;  4GZU A;  5DH9 B;  4Y94 A;  2CY5 A;  3TFM A;  2D11 A;  4K17 A;  1XCG A;  4KVG B;  1UEF A;  5JHG A;  3QWM A;  2MDX A;  4GMV A;  2D9W A;  1V5U A;  2RRF A;  1BWN A;  1U5G A;  2N0Y A;  1DDM A;  5JP4 A;  2I5F A;  2M38 A;  1BTN A;  1RRP B;  3PVW A;  2QKM A;  1ZYI A;  2KUQ A;  1P6S A;  2HTH B;  2HE7 A;  2W2X C;  5HE1 A;  2GCL A;  2LUL A;  3CXB B;  5D27 A;  1V61 A;  5D3W A;  2MFQ A;  1Q67 A;  3DXE A;  2YS5 A;  2ZKM X;  4WSF A;  2KIE A;  3KRW A;  4NSW A;  2M14 A;  1TQZ A;  1MAI A;  2D2Q A;  1SGH A;  3N7C A;  3CIK A;  3P7Z A;  1GC7 A;  3SNH A;  3ODW A;  3HK0 A;  3HIE A;  4YON A;  3X23 A;  2I1J A;  2YF0 A;  4HAW B;  1MPH A;  3NSU A;  3A98 B;  1OY2 A;  3NW8 A;  1PLS A;  2V76 A;  4HSI A;  4K81 A;  2DHJ A;  2H7E A;  4YL8 A;  2EMS A;  4Z2M B;  1GG3 A;  1U5E A;  3HQC A;  2AEH A;  1M7R A;  4Z2N A;  3V5W A;  3A8Q A;  3D8F A;  3U7D A;  4MY6 A;  5FI1 A;  1TXD A;  2P0F A;  5C79 A;  3KY9 A;  2QKL A;  2CRF A;  1W1G A;  2KCJ A;  2P8V A;  4KAX B;  4TYZ A;  1ZC3 B;  1EF1 A;  3PVU A;  2YSZ A;  4HDQ A;  1RJ2 A;  1EAZ A;  2NBV A;  2R09 A;  2UVM A;  3ZVR A;  1DBH A;  1FHW A;  1DRO A;  3M1I B;  1J19 A;  1V89 A;  1KZG A;  1MK9 B;  3GYO A;  2J0M A;  3FEH A;  1FAO A;  2D9X A;  2Z13 A;  1SHC A;  1UNR A;  3DXC A;  4P7I A;  5EFX A;  3BIN A;  4KHO A;  3RCP A;  2GCJ A;  3MPX A;  3UZT A;  2J0J A;  1U27 A;  1QC6 A;  3TO1 A;  1UPQ A;  2COC A;  5GOW B;  3IVF A;  4HAZ B;  1K5G B;  1IRS A;  2EC1 A;  5DHF B;  3F5R A;  1T77 A;  1EVH A;  4PNK A;  2YT1 A;  1W1H A;  2MWN B;  2G35 A;  4OSN A;  2DA0 A;  3B77 A;  2DHK A;  3FVC A;  4DX8 A;  5LG4 B;  2K00 A;  4D0N B;  3ML4 A;  4EMO A;  3QBV B;  3VOQ A;  4KHB A;  3HSA A;  3PP2 A;  2K49 A;  2CAY A;  5HE3 A;  2ADZ A;  1WGU A;  4KHB B;  1P3R A;  1ZC4 B;  2OQB A;  2YS3 A;  1V88 A;  5DHA B;  4DX9 0;  4QXA B;  3SUZ A;  2DFK A;  1UNP A;  2I5C A;  5C16 A;  3TCA A;  2Z0Q A;  4GPT B;  2EJ8 A;  2LOZ A;  2D4Q A;  2XQN M;  2J59 M;  4TKN A;  4OT1 A;  1X86 A;  2CY4 A;  4IAP A;  1H10 A;  1DYN A;  3A58 A;  3AU4 A;  1WI1 A;  2PZ1 A;  4PQ0 A;  4GN1 A;  2VKI A;  1AQC A;  1XX0 A;  2W2W A;  2VSZ A;  4HAX B;  4ZRI A;  1FGY A;  2COF A;  1XR0 B;  2YT0 A;  4MT7 A;  2E2X A;  2K8E A;  3HW2 B;  2DKQ A;  1PMS A;  2DX5 A;  1BTK A;  2DTC A;  5KCV A;  2Y7B A;  2Z4D A;  5KQ4 A;  2NZ8 B;  1U5F A;  2X18 A;  5C6R A;  2UZS A;  4H8S A;  2D9Y A;  1NTV A;  4ZRJ A;  2UZR A;  4HB3 B;  1WG7 A;  2K2U A;  3KSY A;  4F7G A;  4GOU A;  3PSC A;  4A5K A;  2LKO A;  1N3H A;  2IFS A;  2R2Y A;  2DYQ A;  3A8P A;  2YS1 A;  1NI2 A;  1J0W A;  1WJM A;  3KRX A;  3DCX A;  1E5W A;  1PFJ A;  1XD4 A;  2Z59 A;  4DIX A;  5LOP B;  1ZVR A;  1EGX A;  5J3Q A;  1LB1 A;  5LON B;  4B6H A;  1Z87 A;  1BAK A;  2RUK B;  2Z0P A;  2JP2 A;  3FM8 C;  2R0D A;  2COA A;  4HB2 B;  4HAT B;  3U12 A;  4HHV A;  1I2H A;  2KGX B;  1WVH A;  2RNR B;  3D8E A;  1DDV A;  1X05 A;  3LJU X;  4A6F A;  5JHH A;  1OQN A;  3ZDT A;  4QJ4 B;  3GYP A;  3WA0 A;  4KHA A;  2Q13 A;  4A6F B;  3ODX A;  2P0H A;  1FGZ A;  1MKE A;  2RGN B;  1K5D B;  5I2S A;  2AL6 A;  4K2P A;  2ZPY A;  2KUP A;  1W1D A;  3ULB A;  3PEG A;  1UPR A;  4QJ5 B;  4CHM A;  2DYN A;  2DN6 A;  2D9V A;  3NWD A;  2YT2 A;  5HE0 A;  5CLQ B;  5J3T A;  5M4Y B;  5D3X A;  4L6E A;  4A6H A;  1FB8 A;  1U5D A;  2ELB A;  4K2O A;  2L1C A;  2MKR A;  1X1G A;  2GJY A;  2COD A;  1FHX A;  2EMT A;  1MIZ B;  2ROV A;  3NWA A;  1NTY A;  2P0D A;  4HDO A;  5FI0 A;  3SO6 A;  2OTX A;  2DLW A;  4NY0 A;  3KZ1 A;  4XWX A;  2DHI A;  1OMW A;  2RLO A;  2L2I A;  1Y5O A;  1TJ6 A;  4WJ7 A;  1LW3 A;  2KR0 A;  3TVV A;  1ZM0 A;  2Z0O A;  2ELA A;  1DDW A;  4F7H A;  1X1F A;  1XOD A;  2KIG A;  3AJ4 A;  2GS0 A;  2Y8G A;  2LYD A;  5L81 A;  4L1R A;  1FOE A;  2RVB B;  4HAU B;  5KQ1 A;  1UNQ A;  3T06 A;  1V5P A;  4C0A A;  4HB4 B;  2Y8F A;  4GXB A;  3MDB C;  5HE2 A;  1MK7 B;  2FJU B;  1ISN A;  1I7A A;  4MK0 A;  2ROZ B;  4DBB A;  3NWF A;  1NU2 A;  5DIF B;  3G9W A;  1B55 A;  4IFS A;  3O96 A;  4GMX B;  4EKU A;  3QIJ A;  3TW1 A;  1P5T A;  2J0K A;  3WYF B;  2YRY A;  3OAN A;  3FSS A;  1KZ7 A;  3U8Z A;  1U2B A;  2K2J A;  4HAV B;  1WJ1 A;  3PZD A;  2VRW B;  4GNK B;  5JLJ B;  2DKP A;  3VIA A;  4ZRK A;  4CSQ A;  4BBK A;  1V5M A;  2NMB A;  5D3Y A;  2LG1 A;  4D6W A;  4HAY B; 
#chains in the Genus database with same CATH homology
 1T77 A;  1MI1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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