1T77A

Crystal structure of the ph-beach domains of human lrba/bgl
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
414
structure length
414
Chain Sequence
GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of the PH-BEACH Domains of Human LRBA/BGL
pubmed doi rcsb
source organism Homo sapiens
molecule tags Signaling protein
molecule keywords Lipopolysaccharide-responsive and beige-like anchor protein
total genus 124
structure length 414
sequence length 414
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2004-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02138 Beach Beige/BEACH domain
A PF14844 PH_BEACH PH domain associated with Beige/BEACH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1540.10 Mainly Alpha Orthogonal Bundle Neurobeachin; Chain: A, domain 1 BEACH domain 1t77A02
2.30.29.40 Mainly Beta Roll PH-domain like PH domain-like; domain 1 1t77A01
1MI1A 1T77A
chains in the Genus database with same CATH superfamily
1ZM0A 1DDMA 4MT7A 2DX5A 2E2XA 3U7DA 3SO6A 2FJLA 3P6AA 2KUQA 2LULA 2XQNM 5DH9B 2DHKA 4K2OA 5JLJB 3FM8C 2ZKMX 1UEFA 4DX8A 3KRXA 2CRFA 5D3YA 2K2JA 4GN1A 1PFJA 1LB1A 4KVGB 2D9XA 5FI0A 1LW3A 1MPHA 1NTYA 2NZ8B 1W1HA 1NI2A 2Y8FA 4GPTB 1KI1B 3X23A 2KIEA 2ELBA 3RCPA 3PP2A 4IFSA 5D3WA 2GS0A 4IAPA 1FGZA 2P0HA 4MY6A 1MK9B 1SHCA 1XR0B 5HE2A 2DYQA 4DBBA 3FSSA 2QKMA 5DHFB 2GCJA 3OANA 4QJ5B 1H10A 3CIKA 1QC6A 4HATB 2P8VA 1IRSA 3A8QA 5C5BB 5GOWB 2RGNB 2COFA 1TQZA 3KSYA 1V5UA 5C16A 2D9ZA 5I2MA 1ZC3B 4TYZA 1P5TA 2I1JA 3ODWA 5HE0A 2YT0A 4HAZB 4NY0A 3PVLA 2K2UA 4YONA 2RVBB 4ZRKA 2ZPYA 5JHGA 1TXDA 1SGHA 1ZVRA 4WJ7A 4ZRJA 3SNHA 4HHVA 4EJNA 4HB4B 1X11A 4PNKA 1P6SA 3DXEA 2UVMA 3A58A 1WJ1A 3FEHA 5D3XA 1J19A 3PZDA 1XX0A 2I1KA 2LG1A 1DROA 3DXCA 2D2QA 3T06A 1WI1A 4F7HA 2K00A 1E5WA 1Z87A 2KCJA 3HK0A 4WSFA 2H7EA 4HB3B 1Y19B 5C6RA 1X1FA 1V61A 3SUZA 3PEGA 2ADZA 1P3RA 1I2HA 4GMXB 3D8EA 1NTVA 4DXAB 3AU5A 1FGYA 3HSAA 5L81A 1TJ6A 1K5GB 1W1GA 1OMWA 2YT2A 4GOUA 2X18A 1U5EA 2LOZA 3PG7A 4QJ4B 4IOYX 1V89A 3ML4A 2D11A 1Q67A 2COCA 3GYPA 3TO1A 4GZUA 2DFKA 1DDVA 2KIGA 1U27A 3DCXA 4KHBA 1X05A 2EMTA 4A6FA 2R0DA 4A6KA 1M7EA 3QBVB 1MI1A 5M4YB 5DHAB 3B77A 2R2YA 2VKIA 4PQ0A 4HAYB 2YS5A 4D6WA 3UZTA 1V5MA 4DX90 3NW8A 4CHJA 1EAZA 1EGXA 5D3VA 4Y94A 1WG7A 2Z14A 2CY5A 1KZGA 2AEHA 1K5DB 2AL6A 1XKEA 1ISNA 2P0DA 3G9WA 1WGQA 1U5DA 3WYFB 4Z2NA 2VSZA 4HDOA 4L6EA 4QJ3B 3AJ4A 4KHOA 3NWAA 2N23A 2Z13A 5C79A 1U5FA 5LONB 2ROZB 3WA0A 2DA0A 3DXDA 4KAXB 5JP4A 4H8SA 2YT1A 5KCVA 2YS1A 1H4RA 1B55A 4A5KA 3SYXA 1FB8A 1BAKA 3NSUA 1XCGA 3IVFA 4HB0B 4C0AA 1GC6A 2D4QA 3CXBB 1MAIA 5KQ1A 2W2XC 2UZRA 2IFSA 2I5FA 3PVWA 2KR0A 1ZSQA 3KZ1A 2LKOA 3TW1A 3QIJA 4KHAA 4YL8A 2D10A 3TCAA 4Z2MB 2DTCA 1MIZB 2J0KA 1XD4A 2EC1A 2EJ8A 2JP2A 1OQNA 3U12A 2MFQA 2Z59A 2L2IA 2RSGA 5J3TA 1NU2A 3O96A 2GUMA 2J0MA 5DIFB 2QKLA 2KUPA 4GNKB 4EKUA 2BCJA 1X1GA 4GMVA 2Z0PA 4HDQA 1AQCA 1U5GA 5LOPB 3D8FA 2DX1A 3QWMA 2GCLA 1UNRA 4K17A 1BTKA 1PMSA 3GYOA 3ODXA 2PZ1A 5C5BA 2Z4DA 3TVVA 1V5PA 1WJMA 2YS3A 3A98B 4QXAB 1DYNA 2LYDA 2CAYA 2N0YA 4WVFB 1BTNA 3BJIA 3ZVRA 3ULCA 1UPQA 5CLQB 1UNPA 1WGUA 2J59M 2Z0OA 2EMSA 3BINA 1MK7B 1MIXA 2M38A 3U8ZA 3MPXA 2NMBA 2Q13A 2RLOA 4HSIA 1M7RA 1ZC4B 2K49A 4HAVB 1GG3A 2DHIA 4NSWA 3AU4A 3MDBC 3SV1A 2GJYA 2UZSA 2VRWB 5J3YA 3N7CA 2YF0A 2M14A 1QQGA 1DDWA 3PSCA 2HTHB 5LG4B 1N3HA 2NBVA 4EMOA 1RRPB 2CY4A 1DBHA 5JHHA 2J0JA 1FOEA 3TFMA 4HAWB 5J3QA 4GXBA 2L1CA 5HE1A 1OY2A 1W1DA 2H7DA 2Y7BA 1AWEA 2RNRB 3OHMB 2RRFA 4BBKA 2MWNB 1FHXA 1Y5OA 3VIAA 4KHBB 5EFXA 5KQ4A 2FJUB 3F5RA 2D9VA 3LJUX 2D9WA 4HB2B 2Y8GA 3HQCA 1U2BA 2I5CA 3HIEA 1ZYIA 1UPRA 5DI9B 1MKEA 1EVHA 5FI1A 2YRYA 4D0NB 3KRWA 2IYBA 3P7ZA 3ULBA 2DHJA 4B6HA 4CYEA 4MK0A 3FVCA 2MDXA 3NWDA 2DKPA 1PLSA 4HAXB 5IRSA 2G35A 2W2XD 4P7IA 5HE3A 2KGXB 2OTXA 1GC7A 1X86A 1FHOA 1I7AA 4K81A 3D8DA 2YVCA 4F7UP 4OT1A 4L1RA 1J0WA 1FHWA 3V5WA 1WVHA 3A8PA 2ELAA 4HAUB 4A6HA 5CLLB 4DIXA 1RJ2A 2ROVA 4K2PA 2CODA 3F0WA 4OSNA 4CHMA 2P0FA 5I2SA 3NWFA 1UNQA 4TKNA 4XWXA 2OQBA 2MKRA 4ZRIA 2DYNA 1BWNA 3ZDTA 4A6FB 2Z0QA 1FAOA 3KY9A 3PVUA 2DLWA 1V88A 2HE7A 2W2WA 4F7GA 3M1IB 3ODOA 2DN6A 4CSQA 1KZ7A 2D9YA 5D27A 2RUKB 2COAA 2YSZA 1EF1A 2K8EA 3VOQA 1U29A 3HW2B 2LOXA 1T77A 2DKQA 2R09A 2V76A 1XODA
chains in the Genus database with same CATH topology
1MI1A 1T77A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MI1 A;  1T77 A; 
#chains in the Genus database with same CATH topology
 1ZM0 A;  1DDM A;  4MT7 A;  2DX5 A;  2E2X A;  3U7D A;  3SO6 A;  2FJL A;  3P6A A;  2KUQ A;  2LUL A;  2XQN M;  5DH9 B;  2DHK A;  4K2O A;  5JLJ B;  3FM8 C;  2ZKM X;  1UEF A;  4DX8 A;  3KRX A;  2CRF A;  5D3Y A;  2K2J A;  4GN1 A;  1PFJ A;  1LB1 A;  4KVG B;  2D9X A;  5FI0 A;  1LW3 A;  1MPH A;  1NTY A;  2NZ8 B;  1W1H A;  1NI2 A;  2Y8F A;  4GPT B;  1KI1 B;  3X23 A;  2KIE A;  2ELB A;  3RCP A;  3PP2 A;  4IFS A;  5D3W A;  2GS0 A;  4IAP A;  1FGZ A;  2P0H A;  4MY6 A;  1MK9 B;  1SHC A;  1XR0 B;  5HE2 A;  2DYQ A;  4DBB A;  3FSS A;  2QKM A;  5DHF B;  2GCJ A;  3OAN A;  4QJ5 B;  1H10 A;  3CIK A;  1QC6 A;  4HAT B;  2P8V A;  1IRS A;  3A8Q A;  5C5B B;  5GOW B;  2RGN B;  2COF A;  1TQZ A;  3KSY A;  1V5U A;  5C16 A;  2D9Z A;  5I2M A;  1ZC3 B;  4TYZ A;  1P5T A;  2I1J A;  3ODW A;  5HE0 A;  2YT0 A;  4HAZ B;  4NY0 A;  3PVL A;  2K2U A;  4YON A;  2RVB B;  4ZRK A;  2ZPY A;  5JHG A;  1TXD A;  1SGH A;  1ZVR A;  4WJ7 A;  4ZRJ A;  3SNH A;  4HHV A;  4EJN A;  4HB4 B;  1X11 A;  4PNK A;  1P6S A;  3DXE A;  2UVM A;  3A58 A;  1WJ1 A;  3FEH A;  5D3X A;  1J19 A;  3PZD A;  1XX0 A;  2I1K A;  2LG1 A;  1DRO A;  3DXC A;  2D2Q A;  3T06 A;  1WI1 A;  4F7H A;  2K00 A;  1E5W A;  1Z87 A;  2KCJ A;  3HK0 A;  4WSF A;  2H7E A;  4HB3 B;  1Y19 B;  5C6R A;  1X1F A;  1V61 A;  3SUZ A;  3PEG A;  2ADZ A;  1P3R A;  1I2H A;  4GMX B;  3D8E A;  1NTV A;  4DXA B;  3AU5 A;  1FGY A;  3HSA A;  5L81 A;  1TJ6 A;  1K5G B;  1W1G A;  1OMW A;  2YT2 A;  4GOU A;  2X18 A;  1U5E A;  2LOZ A;  3PG7 A;  4QJ4 B;  4IOY X;  1V89 A;  3ML4 A;  2D11 A;  1Q67 A;  2COC A;  3GYP A;  3TO1 A;  4GZU A;  2DFK A;  1DDV A;  2KIG A;  1U27 A;  3DCX A;  4KHB A;  1X05 A;  2EMT A;  4A6F A;  2R0D A;  4A6K A;  1M7E A;  3QBV B;  1MI1 A;  5M4Y B;  5DHA B;  3B77 A;  2R2Y A;  2VKI A;  4PQ0 A;  4HAY B;  2YS5 A;  4D6W A;  3UZT A;  1V5M A;  4DX9 0;  3NW8 A;  4CHJ A;  1EAZ A;  1EGX A;  5D3V A;  4Y94 A;  1WG7 A;  2Z14 A;  2CY5 A;  1KZG A;  2AEH A;  1K5D B;  2AL6 A;  1XKE A;  1ISN A;  2P0D A;  3G9W A;  1WGQ A;  1U5D A;  3WYF B;  4Z2N A;  2VSZ A;  4HDO A;  4L6E A;  4QJ3 B;  3AJ4 A;  4KHO A;  3NWA A;  2N23 A;  2Z13 A;  5C79 A;  1U5F A;  5LON B;  2ROZ B;  3WA0 A;  2DA0 A;  3DXD A;  4KAX B;  5JP4 A;  4H8S A;  2YT1 A;  5KCV A;  2YS1 A;  1H4R A;  1B55 A;  4A5K A;  3SYX A;  1FB8 A;  1BAK A;  3NSU A;  1XCG A;  3IVF A;  4HB0 B;  4C0A A;  1GC6 A;  2D4Q A;  3CXB B;  1MAI A;  5KQ1 A;  2W2X C;  2UZR A;  2IFS A;  2I5F A;  3PVW A;  2KR0 A;  1ZSQ A;  3KZ1 A;  2LKO A;  3TW1 A;  3QIJ A;  4KHA A;  4YL8 A;  2D10 A;  3TCA A;  4Z2M B;  2DTC A;  1MIZ B;  2J0K A;  1XD4 A;  2EC1 A;  2EJ8 A;  2JP2 A;  1OQN A;  3U12 A;  2MFQ A;  2Z59 A;  2L2I A;  2RSG A;  5J3T A;  1NU2 A;  3O96 A;  2GUM A;  2J0M A;  5DIF B;  2QKL A;  2KUP A;  4GNK B;  4EKU A;  2BCJ A;  1X1G A;  4GMV A;  2Z0P A;  4HDQ A;  1AQC A;  1U5G A;  5LOP B;  3D8F A;  2DX1 A;  3QWM A;  2GCL A;  1UNR A;  4K17 A;  1BTK A;  1PMS A;  3GYO A;  3ODX A;  2PZ1 A;  5C5B A;  2Z4D A;  3TVV A;  1V5P A;  1WJM A;  2YS3 A;  3A98 B;  4QXA B;  1DYN A;  2LYD A;  2CAY A;  2N0Y A;  4WVF B;  1BTN A;  3BJI A;  3ZVR A;  3ULC A;  1UPQ A;  5CLQ B;  1UNP A;  1WGU A;  2J59 M;  2Z0O A;  2EMS A;  3BIN A;  1MK7 B;  1MIX A;  2M38 A;  3U8Z A;  3MPX A;  2NMB A;  2Q13 A;  2RLO A;  4HSI A;  1M7R A;  1ZC4 B;  2K49 A;  4HAV B;  1GG3 A;  2DHI A;  4NSW A;  3AU4 A;  3MDB C;  3SV1 A;  2GJY A;  2UZS A;  2VRW B;  5J3Y A;  3N7C A;  2YF0 A;  2M14 A;  1QQG A;  1DDW A;  3PSC A;  2HTH B;  5LG4 B;  1N3H A;  2NBV A;  4EMO A;  1RRP B;  2CY4 A;  1DBH A;  5JHH A;  2J0J A;  1FOE A;  3TFM A;  4HAW B;  5J3Q A;  4GXB A;  2L1C A;  5HE1 A;  1OY2 A;  1W1D A;  2H7D A;  2Y7B A;  1AWE A;  2RNR B;  3OHM B;  2RRF A;  4BBK A;  2MWN B;  1FHX A;  1Y5O A;  3VIA A;  4KHB B;  5EFX A;  5KQ4 A;  2FJU B;  3F5R A;  2D9V A;  3LJU X;  2D9W A;  4HB2 B;  2Y8G A;  3HQC A;  1U2B A;  2I5C A;  3HIE A;  1ZYI A;  1UPR A;  5DI9 B;  1MKE A;  1EVH A;  5FI1 A;  2YRY A;  4D0N B;  3KRW A;  2IYB A;  3P7Z A;  3ULB A;  2DHJ A;  4B6H A;  4CYE A;  4MK0 A;  3FVC A;  2MDX A;  3NWD A;  2DKP A;  1PLS A;  4HAX B;  5IRS A;  2G35 A;  2W2X D;  4P7I A;  5HE3 A;  2KGX B;  2OTX A;  1GC7 A;  1X86 A;  1FHO A;  1I7A A;  4K81 A;  3D8D A;  2YVC A;  4F7U P;  4OT1 A;  4L1R A;  1J0W A;  1FHW A;  3V5W A;  1WVH A;  3A8P A;  2ELA A;  4HAU B;  4A6H A;  5CLL B;  4DIX A;  1RJ2 A;  2ROV A;  4K2P A;  2COD A;  3F0W A;  4OSN A;  4CHM A;  2P0F A;  5I2S A;  3NWF A;  1UNQ A;  4TKN A;  4XWX A;  2OQB A;  2MKR A;  4ZRI A;  2DYN A;  1BWN A;  3ZDT A;  4A6F B;  2Z0Q A;  1FAO A;  3KY9 A;  3PVU A;  2DLW A;  1V88 A;  2HE7 A;  2W2W A;  4F7G A;  3M1I B;  3ODO A;  2DN6 A;  4CSQ A;  1KZ7 A;  2D9Y A;  5D27 A;  2RUK B;  2COA A;  2YSZ A;  1EF1 A;  2K8E A;  3VOQ A;  1U29 A;  3HW2 B;  2LOX A;  1T77 A;  2DKQ A;  2R09 A;  2V76 A;  1XOD A; 
#chains in the Genus database with same CATH homology
 1MI1 A;  1T77 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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