1T7QA

Crystal structure of the f565a mutant of murine carnitine acetyltransferase in complex with carnitine and coa
Total Genus 220
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
220
sequence length
599
structure length
599
Chain Sequence
SHMAHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMAFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Carnitine acetyltransferase
publication title Structural and biochemical studies of the substrate selectivity of carnitine acetyltransferase
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 220
structure length 599
sequence length 599
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2004-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1t7qA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1t7qA02
4EYWA 1S5OA 2H3UA 1NDFA 2FY2A 2H3PA 1T7OA 1T7QA 1NDIA 2RCUA 2H3WA 2H4TA 1T1UA 2FW3A 1NM8A 1T7NA 4EPHA 2FY5A 1NDBA 2DEBA 1Q6XA 2FY4A 4EP9A 2FYOA 2FY3A
chains in the Genus database with same CATH superfamily
4N72A 4EYWA 1DPDA 1EAEA 1Q9JA 1NDFA 3FP0A 1XL8A 2E1VA 1EACA 1XMDA 2FW3A 1NM8A 1T7NA 1L5AA 5KJWA 4KE4A 2E1TA 5FALA 2II4A 4JN3A 3U9FA 2ZBAA 1Q6XA 2FY4A 2BGHA 2RKTA 4G0BA 1EAFA 2H3UA 4JN5A 1T7OA 2II3A 3MAEA 4G22A 3CLAA 1SCZA 2E1UA 1C4TA 4KECA 3FOTA 4EPHA 5KJTA 5DUAA 4CLAA 1NDBA 2XR7A 5DU9A 1EABA 4EP9A 1DPCA 1XMCA 2I9DA 3U9BA 2XHGA 5T3EA 3B2SA 4G2MA 1Q23A 4HVMA 1T7QA 2RCUA 2H4TA 1T1UA 1QCAA 1EAAA 2CLAA 2VSQA 1EADA 1CIAA 2FY5A 2DEBA 2FY3A 1NOCB 2FYOA 5KJVA 1S5OA 2FY2A 1E2OA 3B30A 1NDIA 2H3WA 5FANA 2IHWA 1CLAA 2RKVA 3L60A 1XL7A 5KJSA 1DPBA 1PD5A 2II5A 2JGPA 5KJUA 2H3PA
chains in the Genus database with same CATH topology
2XHGA 5T3EA 4EYWA 1S5OA 2H3UA 1Q9JA 1NDFA 2FY2A 4JN5A 4HVMA 2H3PA 1T7OA 3FP0A 1T7QA 1NDIA 2RCUA 2H3WA 2H4TA 1T1UA 2FW3A 1NM8A 1T7NA 2VSQA 1L5AA 3FOTA 4EPHA 2FY5A 5DUAA 1NDBA 4JN3A 2DEBA 1Q6XA 2FY4A 5DU9A 2JGPA 4EP9A 2FYOA 2FY3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EYW A;  1S5O A;  2H3U A;  1NDF A;  2FY2 A;  2H3P A;  1T7O A;  1T7Q A;  1NDI A;  2RCU A;  2H3W A;  2H4T A;  1T1U A;  2FW3 A;  1NM8 A;  1T7N A;  4EPH A;  2FY5 A;  1NDB A;  2DEB A;  1Q6X A;  2FY4 A;  4EP9 A;  2FYO A;  2FY3 A; 
#chains in the Genus database with same CATH topology
 4N72 A;  4EYW A;  1DPD A;  1EAE A;  1Q9J A;  1NDF A;  3FP0 A;  1XL8 A;  2E1V A;  1EAC A;  1XMD A;  2FW3 A;  1NM8 A;  1T7N A;  1L5A A;  5KJW A;  4KE4 A;  2E1T A;  5FAL A;  2II4 A;  4JN3 A;  3U9F A;  2ZBA A;  1Q6X A;  2FY4 A;  2BGH A;  2RKT A;  4G0B A;  1EAF A;  2H3U A;  4JN5 A;  1T7O A;  2II3 A;  3MAE A;  4G22 A;  3CLA A;  1SCZ A;  2E1U A;  1C4T A;  4KEC A;  3FOT A;  4EPH A;  5KJT A;  5DUA A;  4CLA A;  1NDB A;  2XR7 A;  5DU9 A;  1EAB A;  4EP9 A;  1DPC A;  1XMC A;  2I9D A;  3U9B A;  2XHG A;  5T3E A;  3B2S A;  4G2M A;  1Q23 A;  4HVM A;  1T7Q A;  2RCU A;  2H4T A;  1T1U A;  1QCA A;  1EAA A;  2CLA A;  2VSQ A;  1EAD A;  1CIA A;  2FY5 A;  2DEB A;  2FY3 A;  1NOC B;  2FYO A;  5KJV A;  1S5O A;  2FY2 A;  1E2O A;  3B30 A;  1NDI A;  2H3W A;  5FAN A;  2IHW A;  1CLA A;  2RKV A;  3L60 A;  1XL7 A;  5KJS A;  1DPB A;  1PD5 A;  2II5 A;  2JGP A;  5KJU A;  2H3P A; 
#chains in the Genus database with same CATH homology
 2XHG A;  5T3E A;  4EYW A;  1S5O A;  2H3U A;  1Q9J A;  1NDF A;  2FY2 A;  4JN5 A;  4HVM A;  2H3P A;  1T7O A;  3FP0 A;  1T7Q A;  1NDI A;  2RCU A;  2H3W A;  2H4T A;  1T1U A;  2FW3 A;  1NM8 A;  1T7N A;  2VSQ A;  1L5A A;  3FOT A;  4EPH A;  2FY5 A;  5DUA A;  1NDB A;  4JN3 A;  2DEB A;  1Q6X A;  2FY4 A;  5DU9 A;  2JGP A;  4EP9 A;  2FYO A;  2FY3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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