1T7QA

Crystal structure of the f565a mutant of murine carnitine acetyltransferase in complex with carnitine and coa
Total Genus 220
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
220
sequence length
599
structure length
599
Chain Sequence
SHMAHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMAFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Mus musculus
publication title Structural and biochemical studies of the substrate selectivity of carnitine acetyltransferase
pubmed doi rcsb
molecule keywords Carnitine acetyltransferase
total genus 220
structure length 599
sequence length 599
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2004-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1t7qA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1t7qA02
2H3WA 2FY3A 4EPHA 4EYWA 1T7NA 1T7QA 2H4TA 2RCUA 2DEBA 2FY5A 2H3PA 1NDIA 1S5OA 1NDFA 2FW3A 1NDBA 2H3UA 1T1UA 1NM8A 4EP9A 1T7OA 2FY2A 1Q6XA 2FYOA 2FY4A
chains in the Genus database with same CATH superfamily
2FY3A 3MAEA 1EAFA 5FALA 2RKVA 2RCUA 1XL8A 2DEBA 4JN3A 5KJWA 4HVMA 1T1UA 1NM8A 2XHGA 1EADA 1NOCB 1Q6XA 2RKTA 1DPBA 5DU9A 1EABA 2H3WA 1CIAA 3FOTA 4EPHA 5KJSA 1T7NA 1T7QA 2H4TA 2II4A 2FY5A 4G2MA 2ZBAA 4CLAA 2FW3A 1NDBA 1DPDA 1XMDA 2VSQA 2II3A 5FANA 4EP9A 1QCAA 1T7OA 4JN5A 2FY4A 1E2OA 1SCZA 1EAEA 1CLAA 4EYWA 2II5A 4KECA 2IHWA 4G0BA 3U9FA 1XL7A 5KJTA 2H3PA 1NDIA 1S5OA 3B30A 5KJVA 2CLAA 1NDFA 3U9BA 5KJUA 2E1UA 1EAAA 2XR7A 3L60A 4KE4A 2JGPA 1DPCA 3CLAA 1EACA 4N72A 1XMCA 1C4TA 2E1VA 1Q23A 1L5AA 2BGHA 1Q9JA 5DUAA 2H3UA 3B2SA 3FP0A 2E1TA 4G22A 2FY2A 2FYOA 5T3EA 2I9DA 1PD5A
chains in the Genus database with same CATH topology
2H3WA 2FY3A 2JGPA 3FOTA 4EPHA 4EYWA 1T7NA 1T7QA 2H4TA 2RCUA 2DEBA 2FY5A 2H3PA 1NDIA 1L5AA 1S5OA 4JN3A 1NDFA 2FW3A 1Q9JA 1NDBA 4HVMA 5DUAA 2H3UA 2VSQA 3FP0A 1T1UA 1NM8A 2XHGA 4EP9A 1T7OA 2FY2A 1Q6XA 2FYOA 4JN5A 5T3EA 2FY4A 5DU9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H3W A;  2FY3 A;  4EPH A;  4EYW A;  1T7N A;  1T7Q A;  2H4T A;  2RCU A;  2DEB A;  2FY5 A;  2H3P A;  1NDI A;  1S5O A;  1NDF A;  2FW3 A;  1NDB A;  2H3U A;  1T1U A;  1NM8 A;  4EP9 A;  1T7O A;  2FY2 A;  1Q6X A;  2FYO A;  2FY4 A; 
#chains in the Genus database with same CATH topology
 2FY3 A;  3MAE A;  1EAF A;  5FAL A;  2RKV A;  2RCU A;  1XL8 A;  2DEB A;  4JN3 A;  5KJW A;  4HVM A;  1T1U A;  1NM8 A;  2XHG A;  1EAD A;  1NOC B;  1Q6X A;  2RKT A;  1DPB A;  5DU9 A;  1EAB A;  2H3W A;  1CIA A;  3FOT A;  4EPH A;  5KJS A;  1T7N A;  1T7Q A;  2H4T A;  2II4 A;  2FY5 A;  4G2M A;  2ZBA A;  4CLA A;  2FW3 A;  1NDB A;  1DPD A;  1XMD A;  2VSQ A;  2II3 A;  5FAN A;  4EP9 A;  1QCA A;  1T7O A;  4JN5 A;  2FY4 A;  1E2O A;  1SCZ A;  1EAE A;  1CLA A;  4EYW A;  2II5 A;  4KEC A;  2IHW A;  4G0B A;  3U9F A;  1XL7 A;  5KJT A;  2H3P A;  1NDI A;  1S5O A;  3B30 A;  5KJV A;  2CLA A;  1NDF A;  3U9B A;  5KJU A;  2E1U A;  1EAA A;  2XR7 A;  3L60 A;  4KE4 A;  2JGP A;  1DPC A;  3CLA A;  1EAC A;  4N72 A;  1XMC A;  1C4T A;  2E1V A;  1Q23 A;  1L5A A;  2BGH A;  1Q9J A;  5DUA A;  2H3U A;  3B2S A;  3FP0 A;  2E1T A;  4G22 A;  2FY2 A;  2FYO A;  5T3E A;  2I9D A;  1PD5 A; 
#chains in the Genus database with same CATH homology
 2H3W A;  2FY3 A;  2JGP A;  3FOT A;  4EPH A;  4EYW A;  1T7N A;  1T7Q A;  2H4T A;  2RCU A;  2DEB A;  2FY5 A;  2H3P A;  1NDI A;  1L5A A;  1S5O A;  4JN3 A;  1NDF A;  2FW3 A;  1Q9J A;  1NDB A;  4HVM A;  5DUA A;  2H3U A;  2VSQ A;  3FP0 A;  1T1U A;  1NM8 A;  2XHG A;  4EP9 A;  1T7O A;  2FY2 A;  1Q6X A;  2FYO A;  4JN5 A;  5T3E A;  2FY4 A;  5DU9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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