1T9PA

Crystal structure of v44a, g45p cp rubredoxin
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
54
structure length
54
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGAPKDQFEEVEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Rubredoxin
publication title Crystallographic studies of V44 mutants of Clostridium pasteurianum rubredoxin: Effects of side-chain size on reduction potential.
pubmed doi rcsb
source organism Clostridium pasteurianum
total genus 10
structure length 54
sequence length 54
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2004-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1t9pA00
1SMWA 1JYBA 1DVBA 1YUXA 1CADA 1FHMA 3RZ6A 4K9FA 1R0GA 3PZAA 1DX8A 1C09A 1R0HA 1IROA 1BQ9A 1RB9A 1R0JA 3RYGA 3QVDA 3KYVA 3KYUA 5AI3A 4YWMA 3KYYA 1LKOA 1T9OA 2MS3A 1YV1A 4YWLA 8RXNA 2PVXA 1CAAA 2KKDA 1E8JA 3PWFA 1SMUA 3KYWA 6RXNA 4TPUA 1S30A 1H7VA 1RDVA 1IU5A 1T9QA 1YK4A 4ME3A 1B13A 1FHHA 2M4YA 4AR3A 1NNQA 1BFYA 1LKPA 4AR4A 1LTLA 1IU6A 2V3BB 4RXNA 1S24A 1B2JA 2K2DA 1R0FA 3RZTA 1YUZA 4AR6A 1BRFA 1SMMA 4POGA 1T9PA 1LKMA 4AR5A 5RXNA 2PYAA 2RDVA 1IRNA 2VL6A 2KN9A 3KYXA 2QL0A 1QYBA 1RYTA 1R0IA 1B2OA 1ZRPA 1BQ8A 2HR5A 1QCVA 1RWDA 1BE7A 5AI2A 2DSXA 1YK5A 3MPSA 2PVEA 4POFA 2LCQA 2GMGA 1S2ZA 1VCXA 5IY0A 1B71A 7RXNA 3A44A 1RDGA 3SS2A
chains in the Genus database with same CATH superfamily
2YU9L 3LNLA 3HOXL 2PSMC 2XJRA 1JYBA 2BE5D 2NVQL 4BBSL 3RZ6A 1R0GA 3PZAA 4TVMA 1C09A 4A3DL 3S17L 2PPTA 2L0ZA 2XJQA 3LWVB 3RYGA 3GTKL 1PFVA 5GAEc 5IYBL 3K7AL 2JA8L 3MSUA 2J9UB 3GTOL 1YV1A 5MF6A 4U671 2PVXA 3S2HL 5K2ME 3HOVL 1H7VA 3H0GL 1IU5A 1T9QA 4ME3A 1B13A 4JADA 2M6OA 1NNQA 5FJ8L 2NVXL 1TWCL 1TWAL 1F4LA 5IYCL 2JI1A 1LTLA 1PFWA 5MFZA 4JAGA 5GAHc 5C4XL 3P2AA 3K35A 5IP9L 1OWCA 1R0FA 1YUZA 3QQCE 2XJUA 1LKMA 4C3JL 2PYAA 3PO2L 3LWRB 5JVH1 4ZN1B 3HKZP 2WB1P 1B2OA 2A69D 2M4VA 4LHNA 2C6BA 1TWFL 1RWDA 1I6HL 5EINC 2DSXA 2PVEA 2HVYC 2GMGA 4V196 4UY81 2O5JD 4A3KL 2XJTA 2NVTL 3GTPL 4AHXA 7RXNA 3H97A 3WWLA 5JVG1 3HOYL 4G6BA 3RZDL 2PMZP 1DVBA 1YUXA 4AI0A 1Y1VL 3IU3I 1R0HA 5M5YL 2R92L 1IROA 1BQ9A 3PKJA 3QVDA 3KYUA 2AUSB 5AI3A 4A3FL 1T9OA 5C4JL 3HJYB 4A3LL 3S16L 1ODHA 2JA7L 1E8JA 3PWFA 1RDVA 5M3FL 2NVYL 5GAGc 2R93L 4LHLA 4AR3A 5C44L 4BBRL 2JI3A 3HOUL 2E2JL 2V3BB 5FLML 2XJSA 3HOWL 3GTJL 3RZTA 4E6YA 1BRFA 3ZG6A 4B8CD 3KYXA 4C2M1 2ZIXA 5IYDL 3B0AB 5H1Sc 1R0IA 3GTQL 5DM61 3I4ML 1TWHL 2CKAA 1ZRPA 2Y0SP 2HR5A 2EY4E 5M5WL 3MPSA 4A3ML 2A6HD 1WJVA 4POFA 5MFPA 3S1ML 1NXEA 4AHZA 2JI2A 3CQZL 3A44A 1SMWA 2ERJA 2Z3QB 1PZXA 1CADA 1FHMA 2B63L 4A3BL 3HJWB 1DX8A 2M6PA 3PKIA 2JA5L 5M3ML 2C6AA 3KYVA 3S15L 4YWMA 3J7Z1 1LKOA 3PO3L 3LPEB 2MS3A 2A68D 5IP7L 3LWPB 4YWLA 2JA6L 3M4OL 8RXNA 2KKDA 5M5XL 1K83L 4XXBB 1P7PA 1SMUA 4C3IL 4JAFA 1YK4A 1R9TL 3PL5A 2M4YA 4BY7L 2E2HL 1BFYA 2AYJA 3S14L 4A3JL 1WCML 4AR4A 4A3CL 4AHYA 3S1QL 2APOB 1IU6A 3J7Y1 3RZOL 1QQTA 5EIOC 1B2JA 1TWGL 3HOZL 1SMMA 4POGA 4BXXL 1VZGA 1Y1WL 1IRNA 3PIO1 2B5ID 3GTGL 2QL0A 1RYTA 3JR7A 4A3EL 4AI3A 3LWOB 1OWBA 2V0FA 1BE7A 3VPBE 5AI2A 1SFOL 5C3EL 1YK5A 4AI2A 1I3QL 4X6AL 2LCQA 1VCXA 1PFUA 5IY0A 1B71A 3S2DL 4Y52L 3HAXC 1RDGA 3H9CA 4JAEA 2XJPA 1Z92B 2E2IL 3GTLL 4K9FA 2RFKB 1I50L 2CR8A 5GADc 1RYQA 4A3GL 3FKIL 1RB9A 1R0JA 1VZHA 3H99A 2A6ED 3PIP1 3KYYA 2R7ZL 3B08B 5MGNA 2WAQP 1CAAA 3NFPI 4A93L 2NYDA 4C3HL 3KYWA 6RXNA 4TPUA 1S30A 3WWNB 4XGHA 4ZN3B 4WFN1 5DM71 3MQKB 5AN9H 5MLC3 4QIWP 1FHHA 2Z3RB 4A3IL 2AQCA 1LKPA 2V0EA 2ERSA 2XJVA 4Y7NL 4RXNA 1PFYA 2CKCA 3LWQB 1S24A 2K2DA 3P8BA 2H12A 3M3YL 4AR6A 4AYBP 1T9PA 4AR5A 5RXNA 2RDVA 4AI1A 1IW7D 2VL6A 2KN9A 3H3VM 3H9BA 4GS7D 4BY1L 1QYBA 2VUML 1NXGA 1BQ8A 1QCVA 3S1NL 3GTML 1S2ZA 1VZIA 3FDJA 3S1RL 3I4NL 4AHWA 3SS2A
chains in the Genus database with same CATH topology
3WWLA 5JVG1 3LNLA 4G6BA 1SMWA 2PSMC 2XJRA 1JYBA 2ERJA 2XJPA 4JAEA 2Z3QB 1Z92B 2BE5D 1DVBA 1YUXA 4AI0A 1CADA 1FHMA 3RZ6A 4K9FA 1R0GA 2CR8A 3PZAA 4TVMA 5GADc 1DX8A 1C09A 1RYQA 3IU3I 2M6PA 1R0HA 3PKIA 2PPTA 2L0ZA 2C6AA 1IROA 1BQ9A 2XJQA 3PKJA 1RB9A 1R0JA 1VZHA 3RYGA 3QVDA 3KYVA 3KYUA 5AI3A 4YWMA 2A6ED 5GAEc 3PIP1 3KYYA 3J7Z1 1LKOA 3MSUA 1T9OA 2J9UB 2MS3A 3LPEB 2A68D 1YV1A 5MF6A 4YWLA 4U671 3B08B 8RXNA 5MGNA 2PVXA 1CAAA 2KKDA 3NFPI 1ODHA 1E8JA 4XXBB 5K2ME 3PWFA 2NYDA 1SMUA 3KYWA 6RXNA 4TPUA 1S30A 1H7VA 3WWNB 1RDVA 1IU5A 4JAFA 4XGHA 1T9QA 1YK4A 4ZN3B 4ME3A 4WFN1 5GAGc 5DM71 5AN9H 1B13A 4JADA 4LHLA 5MLC3 1FHHA 2M4YA 2M6OA 4AR3A 1NNQA 2Z3RB 1BFYA 1LKPA 2AYJA 2V0EA 2JI1A 2JI3A 2ERSA 4AR4A 1LTLA 2XJVA 4AHYA 5MFZA 1IU6A 3J7Y1 4JAGA 5GAHc 2V3BB 4RXNA 2CKCA 1S24A 5EIOC 3P2AA 1B2JA 2K2DA 3K35A 3P8BA 1OWCA 2H12A 2XJSA 1R0FA 3RZTA 1YUZA 4AR6A 4E6YA 3QQCE 2XJUA 1BRFA 1SMMA 4POGA 1T9PA 1LKMA 3ZG6A 4AR5A 5RXNA 2PYAA 2RDVA 1VZGA 4B8CD 4AI1A 1IRNA 3PIO1 5JVH1 1IW7D 2VL6A 2KN9A 3KYXA 2B5ID 4ZN1B 4GS7D 2ZIXA 2QL0A 1QYBA 1RYTA 3B0AB 5H1Sc 1R0IA 1B2OA 2A69D 5DM61 1NXGA 2CKAA 1ZRPA 2M4VA 1BQ8A 4AI3A 4LHNA 2HR5A 1OWBA 2C6BA 2V0FA 1QCVA 1RWDA 1BE7A 3VPBE 5AI2A 5EINC 2DSXA 1YK5A 3MPSA 4AI2A 2PVEA 2A6HD 1WJVA 4POFA 2LCQA 2GMGA 1S2ZA 5MFPA 1VCXA 4V196 1VZIA 4UY81 2O5JD 1NXEA 4AHZA 2JI2A 2XJTA 5IY0A 1B71A 4AHXA 3A44A 7RXNA 1RDGA 4AHWA 3SS2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SMW A;  1JYB A;  1DVB A;  1YUX A;  1CAD A;  1FHM A;  3RZ6 A;  4K9F A;  1R0G A;  3PZA A;  1DX8 A;  1C09 A;  1R0H A;  1IRO A;  1BQ9 A;  1RB9 A;  1R0J A;  3RYG A;  3QVD A;  3KYV A;  3KYU A;  5AI3 A;  4YWM A;  3KYY A;  1LKO A;  1T9O A;  2MS3 A;  1YV1 A;  4YWL A;  8RXN A;  2PVX A;  1CAA A;  2KKD A;  1E8J A;  3PWF A;  1SMU A;  3KYW A;  6RXN A;  4TPU A;  1S30 A;  1H7V A;  1RDV A;  1IU5 A;  1T9Q A;  1YK4 A;  4ME3 A;  1B13 A;  1FHH A;  2M4Y A;  4AR3 A;  1NNQ A;  1BFY A;  1LKP A;  4AR4 A;  1LTL A;  1IU6 A;  2V3B B;  4RXN A;  1S24 A;  1B2J A;  2K2D A;  1R0F A;  3RZT A;  1YUZ A;  4AR6 A;  1BRF A;  1SMM A;  4POG A;  1T9P A;  1LKM A;  4AR5 A;  5RXN A;  2PYA A;  2RDV A;  1IRN A;  2VL6 A;  2KN9 A;  3KYX A;  2QL0 A;  1QYB A;  1RYT A;  1R0I A;  1B2O A;  1ZRP A;  1BQ8 A;  2HR5 A;  1QCV A;  1RWD A;  1BE7 A;  5AI2 A;  2DSX A;  1YK5 A;  3MPS A;  2PVE A;  4POF A;  2LCQ A;  2GMG A;  1S2Z A;  1VCX A;  5IY0 A;  1B71 A;  7RXN A;  3A44 A;  1RDG A;  3SS2 A; 
#chains in the Genus database with same CATH topology
 2YU9 L;  3LNL A;  3HOX L;  2PSM C;  2XJR A;  1JYB A;  2BE5 D;  2NVQ L;  4BBS L;  3RZ6 A;  1R0G A;  3PZA A;  4TVM A;  1C09 A;  4A3D L;  3S17 L;  2PPT A;  2L0Z A;  2XJQ A;  3LWV B;  3RYG A;  3GTK L;  1PFV A;  5GAE c;  5IYB L;  3K7A L;  2JA8 L;  3MSU A;  2J9U B;  3GTO L;  1YV1 A;  5MF6 A;  4U67 1;  2PVX A;  3S2H L;  5K2M E;  3HOV L;  1H7V A;  3H0G L;  1IU5 A;  1T9Q A;  4ME3 A;  1B13 A;  4JAD A;  2M6O A;  1NNQ A;  5FJ8 L;  2NVX L;  1TWC L;  1TWA L;  1F4L A;  5IYC L;  2JI1 A;  1LTL A;  1PFW A;  5MFZ A;  4JAG A;  5GAH c;  5C4X L;  3P2A A;  3K35 A;  5IP9 L;  1OWC A;  1R0F A;  1YUZ A;  3QQC E;  2XJU A;  1LKM A;  4C3J L;  2PYA A;  3PO2 L;  3LWR B;  5JVH 1;  4ZN1 B;  3HKZ P;  2WB1 P;  1B2O A;  2A69 D;  2M4V A;  4LHN A;  2C6B A;  1TWF L;  1RWD A;  1I6H L;  5EIN C;  2DSX A;  2PVE A;  2HVY C;  2GMG A;  4V19 6;  4UY8 1;  2O5J D;  4A3K L;  2XJT A;  2NVT L;  3GTP L;  4AHX A;  7RXN A;  3H97 A;  3WWL A;  5JVG 1;  3HOY L;  4G6B A;  3RZD L;  2PMZ P;  1DVB A;  1YUX A;  4AI0 A;  1Y1V L;  3IU3 I;  1R0H A;  5M5Y L;  2R92 L;  1IRO A;  1BQ9 A;  3PKJ A;  3QVD A;  3KYU A;  2AUS B;  5AI3 A;  4A3F L;  1T9O A;  5C4J L;  3HJY B;  4A3L L;  3S16 L;  1ODH A;  2JA7 L;  1E8J A;  3PWF A;  1RDV A;  5M3F L;  2NVY L;  5GAG c;  2R93 L;  4LHL A;  4AR3 A;  5C44 L;  4BBR L;  2JI3 A;  3HOU L;  2E2J L;  2V3B B;  5FLM L;  2XJS A;  3HOW L;  3GTJ L;  3RZT A;  4E6Y A;  1BRF A;  3ZG6 A;  4B8C D;  3KYX A;  4C2M 1;  2ZIX A;  5IYD L;  3B0A B;  5H1S c;  1R0I A;  3GTQ L;  5DM6 1;  3I4M L;  1TWH L;  2CKA A;  1ZRP A;  2Y0S P;  2HR5 A;  2EY4 E;  5M5W L;  3MPS A;  4A3M L;  2A6H D;  1WJV A;  4POF A;  5MFP A;  3S1M L;  1NXE A;  4AHZ A;  2JI2 A;  3CQZ L;  3A44 A;  1SMW A;  2ERJ A;  2Z3Q B;  1PZX A;  1CAD A;  1FHM A;  2B63 L;  4A3B L;  3HJW B;  1DX8 A;  2M6P A;  3PKI A;  2JA5 L;  5M3M L;  2C6A A;  3KYV A;  3S15 L;  4YWM A;  3J7Z 1;  1LKO A;  3PO3 L;  3LPE B;  2MS3 A;  2A68 D;  5IP7 L;  3LWP B;  4YWL A;  2JA6 L;  3M4O L;  8RXN A;  2KKD A;  5M5X L;  1K83 L;  4XXB B;  1P7P A;  1SMU A;  4C3I L;  4JAF A;  1YK4 A;  1R9T L;  3PL5 A;  2M4Y A;  4BY7 L;  2E2H L;  1BFY A;  2AYJ A;  3S14 L;  4A3J L;  1WCM L;  4AR4 A;  4A3C L;  4AHY A;  3S1Q L;  2APO B;  1IU6 A;  3J7Y 1;  3RZO L;  1QQT A;  5EIO C;  1B2J A;  1TWG L;  3HOZ L;  1SMM A;  4POG A;  4BXX L;  1VZG A;  1Y1W L;  1IRN A;  3PIO 1;  2B5I D;  3GTG L;  2QL0 A;  1RYT A;  3JR7 A;  4A3E L;  4AI3 A;  3LWO B;  1OWB A;  2V0F A;  1BE7 A;  3VPB E;  5AI2 A;  1SFO L;  5C3E L;  1YK5 A;  4AI2 A;  1I3Q L;  4X6A L;  2LCQ A;  1VCX A;  1PFU A;  5IY0 A;  1B71 A;  3S2D L;  4Y52 L;  3HAX C;  1RDG A;  3H9C A;  4JAE A;  2XJP A;  1Z92 B;  2E2I L;  3GTL L;  4K9F A;  2RFK B;  1I50 L;  2CR8 A;  5GAD c;  1RYQ A;  4A3G L;  3FKI L;  1RB9 A;  1R0J A;  1VZH A;  3H99 A;  2A6E D;  3PIP 1;  3KYY A;  2R7Z L;  3B08 B;  5MGN A;  2WAQ P;  1CAA A;  3NFP I;  4A93 L;  2NYD A;  4C3H L;  3KYW A;  6RXN A;  4TPU A;  1S30 A;  3WWN B;  4XGH A;  4ZN3 B;  4WFN 1;  5DM7 1;  3MQK B;  5AN9 H;  5MLC 3;  4QIW P;  1FHH A;  2Z3R B;  4A3I L;  2AQC A;  1LKP A;  2V0E A;  2ERS A;  2XJV A;  4Y7N L;  4RXN A;  1PFY A;  2CKC A;  3LWQ B;  1S24 A;  2K2D A;  3P8B A;  2H12 A;  3M3Y L;  4AR6 A;  4AYB P;  1T9P A;  4AR5 A;  5RXN A;  2RDV A;  4AI1 A;  1IW7 D;  2VL6 A;  2KN9 A;  3H3V M;  3H9B A;  4GS7 D;  4BY1 L;  1QYB A;  2VUM L;  1NXG A;  1BQ8 A;  1QCV A;  3S1N L;  3GTM L;  1S2Z A;  1VZI A;  3FDJ A;  3S1R L;  3I4N L;  4AHW A;  3SS2 A; 
#chains in the Genus database with same CATH homology
 3WWL A;  5JVG 1;  3LNL A;  4G6B A;  1SMW A;  2PSM C;  2XJR A;  1JYB A;  2ERJ A;  2XJP A;  4JAE A;  2Z3Q B;  1Z92 B;  2BE5 D;  1DVB A;  1YUX A;  4AI0 A;  1CAD A;  1FHM A;  3RZ6 A;  4K9F A;  1R0G A;  2CR8 A;  3PZA A;  4TVM A;  5GAD c;  1DX8 A;  1C09 A;  1RYQ A;  3IU3 I;  2M6P A;  1R0H A;  3PKI A;  2PPT A;  2L0Z A;  2C6A A;  1IRO A;  1BQ9 A;  2XJQ A;  3PKJ A;  1RB9 A;  1R0J A;  1VZH A;  3RYG A;  3QVD A;  3KYV A;  3KYU A;  5AI3 A;  4YWM A;  2A6E D;  5GAE c;  3PIP 1;  3KYY A;  3J7Z 1;  1LKO A;  3MSU A;  1T9O A;  2J9U B;  2MS3 A;  3LPE B;  2A68 D;  1YV1 A;  5MF6 A;  4YWL A;  4U67 1;  3B08 B;  8RXN A;  5MGN A;  2PVX A;  1CAA A;  2KKD A;  3NFP I;  1ODH A;  1E8J A;  4XXB B;  5K2M E;  3PWF A;  2NYD A;  1SMU A;  3KYW A;  6RXN A;  4TPU A;  1S30 A;  1H7V A;  3WWN B;  1RDV A;  1IU5 A;  4JAF A;  4XGH A;  1T9Q A;  1YK4 A;  4ZN3 B;  4ME3 A;  4WFN 1;  5GAG c;  5DM7 1;  5AN9 H;  1B13 A;  4JAD A;  4LHL A;  5MLC 3;  1FHH A;  2M4Y A;  2M6O A;  4AR3 A;  1NNQ A;  2Z3R B;  1BFY A;  1LKP A;  2AYJ A;  2V0E A;  2JI1 A;  2JI3 A;  2ERS A;  4AR4 A;  1LTL A;  2XJV A;  4AHY A;  5MFZ A;  1IU6 A;  3J7Y 1;  4JAG A;  5GAH c;  2V3B B;  4RXN A;  2CKC A;  1S24 A;  5EIO C;  3P2A A;  1B2J A;  2K2D A;  3K35 A;  3P8B A;  1OWC A;  2H12 A;  2XJS A;  1R0F A;  3RZT A;  1YUZ A;  4AR6 A;  4E6Y A;  3QQC E;  2XJU A;  1BRF A;  1SMM A;  4POG A;  1T9P A;  1LKM A;  3ZG6 A;  4AR5 A;  5RXN A;  2PYA A;  2RDV A;  1VZG A;  4B8C D;  4AI1 A;  1IRN A;  3PIO 1;  5JVH 1;  1IW7 D;  2VL6 A;  2KN9 A;  3KYX A;  2B5I D;  4ZN1 B;  4GS7 D;  2ZIX A;  2QL0 A;  1QYB A;  1RYT A;  3B0A B;  5H1S c;  1R0I A;  1B2O A;  2A69 D;  5DM6 1;  1NXG A;  2CKA A;  1ZRP A;  2M4V A;  1BQ8 A;  4AI3 A;  4LHN A;  2HR5 A;  1OWB A;  2C6B A;  2V0F A;  1QCV A;  1RWD A;  1BE7 A;  3VPB E;  5AI2 A;  5EIN C;  2DSX A;  1YK5 A;  3MPS A;  4AI2 A;  2PVE A;  2A6H D;  1WJV A;  4POF A;  2LCQ A;  2GMG A;  1S2Z A;  5MFP A;  1VCX A;  4V19 6;  1VZI A;  4UY8 1;  2O5J D;  1NXE A;  4AHZ A;  2JI2 A;  2XJT A;  5IY0 A;  1B71 A;  4AHX A;  3A44 A;  7RXN A;  1RDG A;  4AHW A;  3SS2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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