1T9QA

Crystal structure of v44l cp rubredoxin
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
53
structure length
53
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGLGKDQFEEVE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Clostridium pasteurianum
publication title Crystallographic studies of V44 mutants of Clostridium pasteurianum rubredoxin: Effects of side-chain size on reduction potential.
pubmed doi rcsb
molecule keywords Rubredoxin
total genus 9
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2004-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1t9qA00
1JYBA 1B2OA 1DVBA 1SMWA 1BQ8A 4YWLA 8RXNA 5AI3A 1RDVA 3RYGA 1S30A 1BE7A 1R0GA 2V3BB 1LKPA 3MPSA 3KYWA 3KYXA 2VL6A 2LCQA 1YUXA 4AR5A 1R0HA 1B13A 1RB9A 1YK4A 4AR3A 1LTLA 1T9PA 1E8JA 1DX8A 5IY0A 1LKMA 1B2JA 6RXNA 1LKOA 2K2DA 5AI2A 3A44A 1YV1A 1FHMA 3KYVA 1CAAA 2QL0A 1R0FA 1SMMA 1SMUA 1YUZA 1QCVA 1RDGA 4POGA 1S2ZA 1R0JA 1NNQA 1FHHA 1C09A 4AR6A 2KKDA 3QVDA 4YWMA 1R0IA 1S24A 2MS3A 2PYAA 4RXNA 1BRFA 1QYBA 3RZ6A 4POFA 1IU5A 1VCXA 3KYUA 1RWDA 4TPUA 1T9QA 4ME3A 2KN9A 1IROA 2HR5A 1RYTA 3SS2A 1BFYA 7RXNA 3KYYA 1IRNA 1ZRPA 2PVXA 1IU6A 1BQ9A 4K9FA 1CADA 2DSXA 5RXNA 2RDVA 1T9OA 2GMGA 4AR4A 3PWFA 2M4YA 2PVEA 3RZTA 1YK5A 3PZAA 1B71A 1H7VA
chains in the Genus database with same CATH superfamily
1WCML 4A3GL 2JA8L 1BQ8A 3LPEB 3LWRB 5IP9L 2NVXL 4YWLA 8RXNA 5AI3A 3I4ML 4A93L 1QQTA 4A3KL 1BE7A 1R0GA 2V3BB 3JR7A 5C3EL 3HOZL 1VZIA 2APOB 2B63L 2J9UB 5M5XL 4AI2A 3KYXA 3B08B 1YUXA 4AR5A 2V0EA 2ZIXA 3S1RL 1TWHL 1T9PA 4U671 4JAGA 5IY0A 1LKMA 2PPTA 2JA5L 2NVQL 5C4XL 1LKOA 3A44A 1FHMA 3GTKL 4A3EL 1R0FA 1SMMA 4JAFA 5GAHc 1TWFL 4Y7NL 1S2ZA 1NNQA 3HOYL 2XJRA 4A3CL 3PKIA 3HKZP 2AQCA 3J7Z1 4AR6A 1R0IA 5DM71 2PSMC 4A3JL 3LNLA 2PYAA 4ZN3B 4LHNA 2XJTA 4POFA 1OWBA 3H9BA 1NXEA 5MGNA 3PIO1 1I6HL 2HR5A 3SS2A 1BFYA 3HOXL 2R92L 2C6AA 2CKAA 5MLC3 2DSXA 2RDVA 5K2ME 4C3IL 2PVEA 4XXBB 2NVYL 2WAQP 4TVMA 4A3LL 3HOUL 4Y52L 3RZDL 1SMWA 1Z92B 3HOVL 1RDVA 3RYGA 4G6BA 3S2DL 2YU9L 4A3BL 1S30A 4BXXL 3MPSA 3GTML 5MF6A 4A3DL 1P7PA 3KYWA 3K35A 1R9TL 2RFKB 1B13A 3GTOL 5JVG1 3I4NL 3K7AL 5FJ8L 1Y1VL 2A68D 3LWOB 2K2DA 2M6PA 3S1ML 1K83L 4B8CD 1TWCL 3B0AB 1I3QL 1SMUA 4V196 5MFPA 5JVH1 2XJPA 1R0JA 2E2HL 2A6HD 1C09A 3S17L 5M5YL 5IYDL 1WJVA 5DM61 3P2AA 1PFVA 5IYCL 2MS3A 3HJWB 1QYBA 3J7Y1 5M3ML 4UY81 4BBSL 4C3JL 1T9QA 2M4VA 3FKIL 1IROA 2AUSB 1IRNA 1ZRPA 2A69D 3WWNB 2R7ZL 2Z3RB 2NVTL 2AYJA 1BQ9A 1PFWA 3MSUA 1T9OA 2GMGA 4AHXA 5AN9H 3PWFA 4GS7D 1PFUA 3RZTA 5H1Sc 2XJQA 1YK5A 3PZAA 2VL6A 2B5ID 1H7VA 2CR8A 2JA6L 3S1NL 4BY7L 1JYBA 1DVBA 4A3IL 5IYBL 1ODHA 5GAEc 3H97A 2ERSA 1LKPA 3S15L 2JI3A 5EINC 2EY4E 2XJUA 3S14L 4XGHA 1RB9A 1LTLA 1OWCA 1E8JA 3M4OL 1DX8A 6RXNA 4X6AL 2C6BA 3HJYB 1VZGA 4LHLA 2XJVA 1YUZA 4POGA 1NXGA 4WFN1 3VPBE 5FLML 2BE5D 2CKCA 4E6YA 1S24A 4QIWP 1B71A 3S16L 1BRFA 1IU5A 2O5JD 1VCXA 3KYUA 4AHYA 1RWDA 4TPUA 3S2HL 4ME3A 2NYDA 2L0ZA 4AHWA 5EIOC 3ZG6A 4AI3A 2R93L 3FDJA 2V0FA 1RYQA 2A6ED 3LWPB 5RXNA 3PKJA 3H0GL 1VZHA 3PO2L 2ERJA 3MQKB 1PZXA 3HAXC 2H12A 5C44L 3WWLA 2PMZP 1B2OA 4JAEA 5MFZA 4AI1A 3M3YL 5GAGc 3S1QL 3NFPI 4C3HL 2LCQA 4BY1L 2E2JL 3GTGL 1R0HA 4JADA 1YK4A 4AR3A 3GTPL 3H99A 2M6OA 5M3FL 2HVYC 2E2IL 1B2JA 3PO3L 3GTLL 5AI2A 4A3ML 1YV1A 4AI0A 3KYVA 1CAAA 2QL0A 5IP7L 3P8BA 1QCVA 5C4JL 1RDGA 2JA7L 3H3VM 1TWAL 1FHHA 3LWVB 2KKDA 3QVDA 4YWMA 4A3FL 1Y1WL 1F4LA 2XJSA 1IW7D 2WB1P 4RXNA 3RZ6A 3GTQL 1I50L 4AHZA 2JI1A 3LWQB 3PIP1 4C2M1 2Z3QB 3RZOL 3H9CA 2KN9A 1SFOL 3HOWL 1RYTA 7RXNA 3KYYA 2PVXA 1IU6A 2VUML 3IU3I 4K9FA 1CADA 3GTJL 3QQCE 4AYBP 5M5WL 1PFYA 3PL5A 4AR4A 3CQZL 2M4YA 4BBRL 1TWGL 4ZN1B 5GADc 2Y0SP 2JI2A
chains in the Genus database with same CATH topology
2CR8A 3WWLA 1JYBA 1B2OA 1DVBA 1SMWA 4JAEA 1BQ8A 5MFZA 1Z92B 3LPEB 1ODHA 4YWLA 8RXNA 5GAEc 5AI3A 1RDVA 3RYGA 4G6BA 1S30A 1BE7A 1R0GA 2V3BB 4AI1A 1VZIA 2ERSA 1LKPA 3MPSA 5MF6A 2J9UB 2JI2A 4AI2A 2JI3A 5EINC 3KYWA 2XJUA 5GAGc 3KYXA 3K35A 2VL6A 3NFPI 2LCQA 3B08B 1YUXA 4AR5A 1R0HA 4XGHA 4JADA 1B13A 2V0EA 1RB9A 1YK4A 4AR3A 2ZIXA 1LTLA 1OWCA 1T9PA 5JVG1 4U671 2M6OA 1E8JA 1DX8A 4JAGA 5IY0A 1LKMA 2PPTA 2A68D 1B2JA 6RXNA 1LKOA 2C6BA 2K2DA 5AI2A 2M6PA 3A44A 1YV1A 1VZGA 1FHMA 3KYVA 4AI0A 1CAAA 2QL0A 4B8CD 4LHLA 2XJVA 3B0AB 1SMMA 1R0FA 4JAFA 1SMUA 1YUZA 5GAHc 5MFPA 4V196 3P8BA 1QCVA 5JVH1 1RDGA 2XJPA 4POGA 1NXGA 1S2ZA 1NNQA 1FHHA 1R0JA 2XJRA 3PKIA 2A6HD 4WFN1 1C09A 3VPBE 3J7Z1 4AR6A 2BE5D 2KKDA 3QVDA 2CKCA 4YWMA 1R0IA 4E6YA 1WJVA 5DM71 1S24A 5DM61 2PSMC 3P2AA 2XJSA 2MS3A 3LNLA 2PYAA 4ZN3B 4LHNA 1IW7D 2XJTA 4RXNA 1BRFA 1QYBA 3RZ6A 4POFA 3J7Y1 1OWBA 1IU5A 4UY81 2O5JD 1NXEA 1VCXA 3KYUA 4AHZA 4AHYA 5MGNA 3PIO1 1RWDA 2JI1A 4TPUA 3PIP1 1T9QA 2Z3QB 2M4VA 4ME3A 2KN9A 1IROA 2NYDA 2L0ZA 2HR5A 1RYTA 3SS2A 4AHWA 1BFYA 5EIOC 7RXNA 3ZG6A 3KYYA 1IRNA 1ZRPA 2A69D 2PVXA 4AI3A 3WWNB 2C6AA 2Z3RB 1IU6A 2V0FA 2CKAA 5MLC3 3IU3I 1RYQA 2AYJA 2A6ED 1BQ9A 4K9FA 1CADA 2DSXA 5RXNA 3PKJA 3QQCE 2RDVA 3MSUA 1T9OA 2GMGA 4AHXA 5AN9H 1VZHA 4AR4A 3PWFA 2M4YA 4GS7D 2ERJA 5K2ME 2PVEA 4XXBB 2H12A 3RZTA 2XJQA 4ZN1B 1YK5A 5GADc 3PZAA 5H1Sc 1B71A 4TVMA 2B5ID 1H7VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JYB A;  1B2O A;  1DVB A;  1SMW A;  1BQ8 A;  4YWL A;  8RXN A;  5AI3 A;  1RDV A;  3RYG A;  1S30 A;  1BE7 A;  1R0G A;  2V3B B;  1LKP A;  3MPS A;  3KYW A;  3KYX A;  2VL6 A;  2LCQ A;  1YUX A;  4AR5 A;  1R0H A;  1B13 A;  1RB9 A;  1YK4 A;  4AR3 A;  1LTL A;  1T9P A;  1E8J A;  1DX8 A;  5IY0 A;  1LKM A;  1B2J A;  6RXN A;  1LKO A;  2K2D A;  5AI2 A;  3A44 A;  1YV1 A;  1FHM A;  3KYV A;  1CAA A;  2QL0 A;  1R0F A;  1SMM A;  1SMU A;  1YUZ A;  1QCV A;  1RDG A;  4POG A;  1S2Z A;  1R0J A;  1NNQ A;  1FHH A;  1C09 A;  4AR6 A;  2KKD A;  3QVD A;  4YWM A;  1R0I A;  1S24 A;  2MS3 A;  2PYA A;  4RXN A;  1BRF A;  1QYB A;  3RZ6 A;  4POF A;  1IU5 A;  1VCX A;  3KYU A;  1RWD A;  4TPU A;  1T9Q A;  4ME3 A;  2KN9 A;  1IRO A;  2HR5 A;  1RYT A;  3SS2 A;  1BFY A;  7RXN A;  3KYY A;  1IRN A;  1ZRP A;  2PVX A;  1IU6 A;  1BQ9 A;  4K9F A;  1CAD A;  2DSX A;  5RXN A;  2RDV A;  1T9O A;  2GMG A;  4AR4 A;  3PWF A;  2M4Y A;  2PVE A;  3RZT A;  1YK5 A;  3PZA A;  1B71 A;  1H7V A; 
#chains in the Genus database with same CATH topology
 1WCM L;  4A3G L;  2JA8 L;  1BQ8 A;  3LPE B;  3LWR B;  5IP9 L;  2NVX L;  4YWL A;  8RXN A;  5AI3 A;  3I4M L;  4A93 L;  1QQT A;  4A3K L;  1BE7 A;  1R0G A;  2V3B B;  3JR7 A;  5C3E L;  3HOZ L;  1VZI A;  2APO B;  2B63 L;  2J9U B;  5M5X L;  4AI2 A;  3KYX A;  3B08 B;  1YUX A;  4AR5 A;  2V0E A;  2ZIX A;  3S1R L;  1TWH L;  1T9P A;  4U67 1;  4JAG A;  5IY0 A;  1LKM A;  2PPT A;  2JA5 L;  2NVQ L;  5C4X L;  1LKO A;  3A44 A;  1FHM A;  3GTK L;  4A3E L;  1R0F A;  1SMM A;  4JAF A;  5GAH c;  1TWF L;  4Y7N L;  1S2Z A;  1NNQ A;  3HOY L;  2XJR A;  4A3C L;  3PKI A;  3HKZ P;  2AQC A;  3J7Z 1;  4AR6 A;  1R0I A;  5DM7 1;  2PSM C;  4A3J L;  3LNL A;  2PYA A;  4ZN3 B;  4LHN A;  2XJT A;  4POF A;  1OWB A;  3H9B A;  1NXE A;  5MGN A;  3PIO 1;  1I6H L;  2HR5 A;  3SS2 A;  1BFY A;  3HOX L;  2R92 L;  2C6A A;  2CKA A;  5MLC 3;  2DSX A;  2RDV A;  5K2M E;  4C3I L;  2PVE A;  4XXB B;  2NVY L;  2WAQ P;  4TVM A;  4A3L L;  3HOU L;  4Y52 L;  3RZD L;  1SMW A;  1Z92 B;  3HOV L;  1RDV A;  3RYG A;  4G6B A;  3S2D L;  2YU9 L;  4A3B L;  1S30 A;  4BXX L;  3MPS A;  3GTM L;  5MF6 A;  4A3D L;  1P7P A;  3KYW A;  3K35 A;  1R9T L;  2RFK B;  1B13 A;  3GTO L;  5JVG 1;  3I4N L;  3K7A L;  5FJ8 L;  1Y1V L;  2A68 D;  3LWO B;  2K2D A;  2M6P A;  3S1M L;  1K83 L;  4B8C D;  1TWC L;  3B0A B;  1I3Q L;  1SMU A;  4V19 6;  5MFP A;  5JVH 1;  2XJP A;  1R0J A;  2E2H L;  2A6H D;  1C09 A;  3S17 L;  5M5Y L;  5IYD L;  1WJV A;  5DM6 1;  3P2A A;  1PFV A;  5IYC L;  2MS3 A;  3HJW B;  1QYB A;  3J7Y 1;  5M3M L;  4UY8 1;  4BBS L;  4C3J L;  1T9Q A;  2M4V A;  3FKI L;  1IRO A;  2AUS B;  1IRN A;  1ZRP A;  2A69 D;  3WWN B;  2R7Z L;  2Z3R B;  2NVT L;  2AYJ A;  1BQ9 A;  1PFW A;  3MSU A;  1T9O A;  2GMG A;  4AHX A;  5AN9 H;  3PWF A;  4GS7 D;  1PFU A;  3RZT A;  5H1S c;  2XJQ A;  1YK5 A;  3PZA A;  2VL6 A;  2B5I D;  1H7V A;  2CR8 A;  2JA6 L;  3S1N L;  4BY7 L;  1JYB A;  1DVB A;  4A3I L;  5IYB L;  1ODH A;  5GAE c;  3H97 A;  2ERS A;  1LKP A;  3S15 L;  2JI3 A;  5EIN C;  2EY4 E;  2XJU A;  3S14 L;  4XGH A;  1RB9 A;  1LTL A;  1OWC A;  1E8J A;  3M4O L;  1DX8 A;  6RXN A;  4X6A L;  2C6B A;  3HJY B;  1VZG A;  4LHL A;  2XJV A;  1YUZ A;  4POG A;  1NXG A;  4WFN 1;  3VPB E;  5FLM L;  2BE5 D;  2CKC A;  4E6Y A;  1S24 A;  4QIW P;  1B71 A;  3S16 L;  1BRF A;  1IU5 A;  2O5J D;  1VCX A;  3KYU A;  4AHY A;  1RWD A;  4TPU A;  3S2H L;  4ME3 A;  2NYD A;  2L0Z A;  4AHW A;  5EIO C;  3ZG6 A;  4AI3 A;  2R93 L;  3FDJ A;  2V0F A;  1RYQ A;  2A6E D;  3LWP B;  5RXN A;  3PKJ A;  3H0G L;  1VZH A;  3PO2 L;  2ERJ A;  3MQK B;  1PZX A;  3HAX C;  2H12 A;  5C44 L;  3WWL A;  2PMZ P;  1B2O A;  4JAE A;  5MFZ A;  4AI1 A;  3M3Y L;  5GAG c;  3S1Q L;  3NFP I;  4C3H L;  2LCQ A;  4BY1 L;  2E2J L;  3GTG L;  1R0H A;  4JAD A;  1YK4 A;  4AR3 A;  3GTP L;  3H99 A;  2M6O A;  5M3F L;  2HVY C;  2E2I L;  1B2J A;  3PO3 L;  3GTL L;  5AI2 A;  4A3M L;  1YV1 A;  4AI0 A;  3KYV A;  1CAA A;  2QL0 A;  5IP7 L;  3P8B A;  1QCV A;  5C4J L;  1RDG A;  2JA7 L;  3H3V M;  1TWA L;  1FHH A;  3LWV B;  2KKD A;  3QVD A;  4YWM A;  4A3F L;  1Y1W L;  1F4L A;  2XJS A;  1IW7 D;  2WB1 P;  4RXN A;  3RZ6 A;  3GTQ L;  1I50 L;  4AHZ A;  2JI1 A;  3LWQ B;  3PIP 1;  4C2M 1;  2Z3Q B;  3RZO L;  3H9C A;  2KN9 A;  1SFO L;  3HOW L;  1RYT A;  7RXN A;  3KYY A;  2PVX A;  1IU6 A;  2VUM L;  3IU3 I;  4K9F A;  1CAD A;  3GTJ L;  3QQC E;  4AYB P;  5M5W L;  1PFY A;  3PL5 A;  4AR4 A;  3CQZ L;  2M4Y A;  4BBR L;  1TWG L;  4ZN1 B;  5GAD c;  2Y0S P;  2JI2 A; 
#chains in the Genus database with same CATH homology
 2CR8 A;  3WWL A;  1JYB A;  1B2O A;  1DVB A;  1SMW A;  4JAE A;  1BQ8 A;  5MFZ A;  1Z92 B;  3LPE B;  1ODH A;  4YWL A;  8RXN A;  5GAE c;  5AI3 A;  1RDV A;  3RYG A;  4G6B A;  1S30 A;  1BE7 A;  1R0G A;  2V3B B;  4AI1 A;  1VZI A;  2ERS A;  1LKP A;  3MPS A;  5MF6 A;  2J9U B;  2JI2 A;  4AI2 A;  2JI3 A;  5EIN C;  3KYW A;  2XJU A;  5GAG c;  3KYX A;  3K35 A;  2VL6 A;  3NFP I;  2LCQ A;  3B08 B;  1YUX A;  4AR5 A;  1R0H A;  4XGH A;  4JAD A;  1B13 A;  2V0E A;  1RB9 A;  1YK4 A;  4AR3 A;  2ZIX A;  1LTL A;  1OWC A;  1T9P A;  5JVG 1;  4U67 1;  2M6O A;  1E8J A;  1DX8 A;  4JAG A;  5IY0 A;  1LKM A;  2PPT A;  2A68 D;  1B2J A;  6RXN A;  1LKO A;  2C6B A;  2K2D A;  5AI2 A;  2M6P A;  3A44 A;  1YV1 A;  1VZG A;  1FHM A;  3KYV A;  4AI0 A;  1CAA A;  2QL0 A;  4B8C D;  4LHL A;  2XJV A;  3B0A B;  1SMM A;  1R0F A;  4JAF A;  1SMU A;  1YUZ A;  5GAH c;  5MFP A;  4V19 6;  3P8B A;  1QCV A;  5JVH 1;  1RDG A;  2XJP A;  4POG A;  1NXG A;  1S2Z A;  1NNQ A;  1FHH A;  1R0J A;  2XJR A;  3PKI A;  2A6H D;  4WFN 1;  1C09 A;  3VPB E;  3J7Z 1;  4AR6 A;  2BE5 D;  2KKD A;  3QVD A;  2CKC A;  4YWM A;  1R0I A;  4E6Y A;  1WJV A;  5DM7 1;  1S24 A;  5DM6 1;  2PSM C;  3P2A A;  2XJS A;  2MS3 A;  3LNL A;  2PYA A;  4ZN3 B;  4LHN A;  1IW7 D;  2XJT A;  4RXN A;  1BRF A;  1QYB A;  3RZ6 A;  4POF A;  3J7Y 1;  1OWB A;  1IU5 A;  4UY8 1;  2O5J D;  1NXE A;  1VCX A;  3KYU A;  4AHZ A;  4AHY A;  5MGN A;  3PIO 1;  1RWD A;  2JI1 A;  4TPU A;  3PIP 1;  1T9Q A;  2Z3Q B;  2M4V A;  4ME3 A;  2KN9 A;  1IRO A;  2NYD A;  2L0Z A;  2HR5 A;  1RYT A;  3SS2 A;  4AHW A;  1BFY A;  5EIO C;  7RXN A;  3ZG6 A;  3KYY A;  1IRN A;  1ZRP A;  2A69 D;  2PVX A;  4AI3 A;  3WWN B;  2C6A A;  2Z3R B;  1IU6 A;  2V0F A;  2CKA A;  5MLC 3;  3IU3 I;  1RYQ A;  2AYJ A;  2A6E D;  1BQ9 A;  4K9F A;  1CAD A;  2DSX A;  5RXN A;  3PKJ A;  3QQC E;  2RDV A;  3MSU A;  1T9O A;  2GMG A;  4AHX A;  5AN9 H;  1VZH A;  4AR4 A;  3PWF A;  2M4Y A;  4GS7 D;  2ERJ A;  5K2M E;  2PVE A;  4XXB B;  2H12 A;  3RZT A;  2XJQ A;  4ZN1 B;  1YK5 A;  5GAD c;  3PZA A;  5H1S c;  1B71 A;  4TVM A;  2B5I D;  1H7V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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