1TC5A

Structural analysis of a probable eukaryotic d-amino acid trna deacylase
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
187
structure length
187
Chain Sequence
HMTIRVMLQAMDQGHLLVNNVDKYVRAGRGVMVYIAFLSDRDSAPITDEALRHAVGVLLHTKIFTHFSPEKMINQPQSLEECPEMDILIVPQASLGGKVKGRSVQFHQLVAKDVGAALYDRFCHFVRVARGVDESRVDANGAPRSEGDAPKAEGWIKYNSRVISGTFGNRQGLRFESEGPFTHMFDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Probable eukaryotic D-amino acid tRNA deacylase, LMAJ005534A
publication title Structural analysis of LMAJ005534AAA, a probable eukaryotic D-amino acid tRNA deacylase from Leishmania major
rcsb
source organism Leishmania major
total genus 48
structure length 187
sequence length 187
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2004-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02580 Tyr_Deacylase D-Tyr-tRNA(Tyr) deacylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.80.10 Alpha Beta 3-Layer(bba) Sandwich D-tyrosyl-trna(Tyr) Deacylase; Chain: A; D-tyrosyl-trna(Tyr) Deacylase; Chain: A; 1tc5A00
3LMUA 2OKVA 4S03A 3PD3A 4RRQA 3KO4A 3LMVA 4RR6A 3KODA 4RRLA 4S02A 4RRIA 3KO5A 3KO7A 3KNFA 4S0JA 4RRAA 3PD2A 4NBIA 5J61A 4NBJA 4RRFA 4RRRA 1TC5A 2HKZA 4RRCA 4S0IA 4RR8A 4S0LA 4RRBA 2DBOA 1JKEA 4RR7A 3PD4A 4RRDA 4RRMA 3KOBA 4RRJA 3KO3A 4S0KA 4RRGA 1J7GA 2HL0A 2HL2A 3KNPA 3KOCA 3PD5A 4RR9A 4RRKA 3LMTA 1Y2QA 4RRHA 3KO9A 2HL1A
chains in the Genus database with same CATH superfamily
4S03A 4B4XA 3KO4A 2EX2A 2EX6A 1W8YA 2VGJA 3A3FA 2Y59A 3KNFA 4S0JA 1TC5A 2Y55A 1JKEA 3ZVWA 4RRDA 3KOBA 4S0KA 1J7GA 2XLNA 3KOCA 3PD5A 5CERA 5CEDA 3LMTA 4RRHA 3KO9A 1W5DA 4B4ZA 3PD3A 4RR6A 4RRLA 4S02A 4RRIA 5CECA 4BENA 1W8QA 3KO7A 5J61A 4RRRA 4RR8A 4S0LA 1W79A 2EXBA 3KO3A 4RRGA 2Y4AA 3A3DA 3KNPA 4RRKA 1Y2QA 2EX9A 2HL1A 3LMUA 3ZVTA 2EXAA 3LMVA 2J9PA 4RRAA 4NBJA 2HKZA 4RRCA 4S0IA 2DBOA 2XDMA 4RR7A 4RRMA 2WKEA 3A3EA 2OKVA 4RRQA 2VGKA 3KODA 5CEBA 2XK1A 3KO5A 3PD2A 4NBIA 4RRFA 3A3IA 3V39A 4RRBA 3PD4A 2EX8A 4RRJA 2HL2A 2HL0A 4RR9A 3ZCZA
chains in the Genus database with same CATH topology
4S03A 4B4XA 3KO4A 2EX2A 2EX6A 1W8YA 2VGJA 3A3FA 2Y59A 3KNFA 4S0JA 1TC5A 2Y55A 1JKEA 3ZVWA 4RRDA 3KOBA 4S0KA 1J7GA 2XLNA 3KOCA 3PD5A 5CERA 5CEDA 3LMTA 4RRHA 3KO9A 1W5DA 4B4ZA 3PD3A 4RR6A 4RRLA 4S02A 4RRIA 5CECA 4BENA 1W8QA 3KO7A 5J61A 4RRRA 4RR8A 4S0LA 1W79A 2EXBA 3KO3A 4RRGA 2Y4AA 3A3DA 3KNPA 4RRKA 1Y2QA 2EX9A 2HL1A 3LMUA 3ZVTA 2EXAA 3LMVA 2J9PA 4RRAA 4NBJA 2HKZA 4RRCA 4S0IA 2DBOA 2XDMA 4RR7A 4RRMA 2WKEA 3A3EA 2OKVA 4RRQA 2VGKA 3KODA 5CEBA 2XK1A 3KO5A 3PD2A 4NBIA 4RRFA 3A3IA 3V39A 4RRBA 3PD4A 2EX8A 4RRJA 2HL2A 2HL0A 4RR9A 3ZCZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LMU A;  2OKV A;  4S03 A;  3PD3 A;  4RRQ A;  3KO4 A;  3LMV A;  4RR6 A;  3KOD A;  4RRL A;  4S02 A;  4RRI A;  3KO5 A;  3KO7 A;  3KNF A;  4S0J A;  4RRA A;  3PD2 A;  4NBI A;  5J61 A;  4NBJ A;  4RRF A;  4RRR A;  1TC5 A;  2HKZ A;  4RRC A;  4S0I A;  4RR8 A;  4S0L A;  4RRB A;  2DBO A;  1JKE A;  4RR7 A;  3PD4 A;  4RRD A;  4RRM A;  3KOB A;  4RRJ A;  3KO3 A;  4S0K A;  4RRG A;  1J7G A;  2HL0 A;  2HL2 A;  3KNP A;  3KOC A;  3PD5 A;  4RR9 A;  4RRK A;  3LMT A;  1Y2Q A;  4RRH A;  3KO9 A;  2HL1 A; 
#chains in the Genus database with same CATH topology
 4S03 A;  4B4X A;  3KO4 A;  2EX2 A;  2EX6 A;  1W8Y A;  2VGJ A;  3A3F A;  2Y59 A;  3KNF A;  4S0J A;  1TC5 A;  2Y55 A;  1JKE A;  3ZVW A;  4RRD A;  3KOB A;  4S0K A;  1J7G A;  2XLN A;  3KOC A;  3PD5 A;  5CER A;  5CED A;  3LMT A;  4RRH A;  3KO9 A;  1W5D A;  4B4Z A;  3PD3 A;  4RR6 A;  4RRL A;  4S02 A;  4RRI A;  5CEC A;  4BEN A;  1W8Q A;  3KO7 A;  5J61 A;  4RRR A;  4RR8 A;  4S0L A;  1W79 A;  2EXB A;  3KO3 A;  4RRG A;  2Y4A A;  3A3D A;  3KNP A;  4RRK A;  1Y2Q A;  2EX9 A;  2HL1 A;  3LMU A;  3ZVT A;  2EXA A;  3LMV A;  2J9P A;  4RRA A;  4NBJ A;  2HKZ A;  4RRC A;  4S0I A;  2DBO A;  2XDM A;  4RR7 A;  4RRM A;  2WKE A;  3A3E A;  2OKV A;  4RRQ A;  2VGK A;  3KOD A;  5CEB A;  2XK1 A;  3KO5 A;  3PD2 A;  4NBI A;  4RRF A;  3A3I A;  3V39 A;  4RRB A;  3PD4 A;  2EX8 A;  4RRJ A;  2HL2 A;  2HL0 A;  4RR9 A;  3ZCZ A; 
#chains in the Genus database with same CATH homology
 4S03 A;  4B4X A;  3KO4 A;  2EX2 A;  2EX6 A;  1W8Y A;  2VGJ A;  3A3F A;  2Y59 A;  3KNF A;  4S0J A;  1TC5 A;  2Y55 A;  1JKE A;  3ZVW A;  4RRD A;  3KOB A;  4S0K A;  1J7G A;  2XLN A;  3KOC A;  3PD5 A;  5CER A;  5CED A;  3LMT A;  4RRH A;  3KO9 A;  1W5D A;  4B4Z A;  3PD3 A;  4RR6 A;  4RRL A;  4S02 A;  4RRI A;  5CEC A;  4BEN A;  1W8Q A;  3KO7 A;  5J61 A;  4RRR A;  4RR8 A;  4S0L A;  1W79 A;  2EXB A;  3KO3 A;  4RRG A;  2Y4A A;  3A3D A;  3KNP A;  4RRK A;  1Y2Q A;  2EX9 A;  2HL1 A;  3LMU A;  3ZVT A;  2EXA A;  3LMV A;  2J9P A;  4RRA A;  4NBJ A;  2HKZ A;  4RRC A;  4S0I A;  2DBO A;  2XDM A;  4RR7 A;  4RRM A;  2WKE A;  3A3E A;  2OKV A;  4RRQ A;  2VGK A;  3KOD A;  5CEB A;  2XK1 A;  3KO5 A;  3PD2 A;  4NBI A;  4RRF A;  3A3I A;  3V39 A;  4RRB A;  3PD4 A;  2EX8 A;  4RRJ A;  2HL2 A;  2HL0 A;  4RR9 A;  3ZCZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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