1TD6A

Crystal structure of the conserved hypothetical protein mp506/mpn330 (gi: 1674200)from mycoplasma pneumoniae
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
286
structure length
286
Chain Sequence
PNQFVNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFLHQFDKVMELVKQKDFKTAQSRCEEELAAPYLPKPLVSFFQSLLQLVNHDLLEQQNAALASLPAAKIIELVLQDYPNKLNMIHYLLPKTKAFVKPHLLQRLQFVLTDSELLELKRFSFFQALNQIPGFQGEQVEYFNSKLKQKFTLTLGEFEIAQQPDAKAYFEQLITQIQQLFLKEPVNAEFANEIIDAFLVSYFPLHPPVPLAQLAAKIYEYVSQIVLNEAVNLKDELIKLIVHTLYEQLDRPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein MG237 homolog
publication title Crystal structure of the conserved hypothetical protein MPN330 (GI: 1674200) from Mycoplasma pneumoniae.
pubmed doi rcsb
source organism Mycoplasma pneumoniae
total genus 89
structure length 286
sequence length 286
ec nomenclature
pdb deposition date 2004-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11428 DUF3196 Protein of unknown function (DUF3196)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.40 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Hypothetical protein mg237 homolog; domain 3 1td6A03
1.20.1480.10 Mainly Alpha Up-down Bundle hypothetical protein mp506/mpn330, domain 1 hypothetical protein mp506/mpn330, domain 1 1td6A01
3.30.1790.10 Alpha Beta 2-Layer Sandwich hypothetical protein mp506/mpn330, domain 2 hypothetical protein mp506/mpn330, domain 2 1td6A02
1TD6A
chains in the Genus database with same CATH superfamily
1H26B 2G77A 1G3NC 5DQVA 3VKHA 4EOMB 5L2WB 4AKGA 1V9VA 2QQ8A 3TNWB 2ZPBB 1UNHD 3WVEB 4EOQB 4KRCB 2JGZB 3QZ9B 2C5XB 4F7JB 3A8HB 2DXBB 2I40B 5LQFB 1H1PB 4TTHA 4CFXB 2DMEA 4Z6YA 3HBLA 4OGRB 3QYHB 3EOCB 3QHRB 1O9KB 2UZEB 3TW6A 3POMA 1GUXB 4HNUA 3A8MB 1FINB 3H4CA 1AISB 2CJMB 3QXEB 5EFQB 4F6UB 4YOSA 4BCGB 2ZPHB 4BCMD 3DDQB 3MI9B 2WIHB 5IF1B 1E9HB 3PO3S 4BCHB 2IN3A 4EOPB 2M9XA 4EOJB 1H28B 4F7NB 3BLHB 1OGUB 2B9RA 1O9KA 2C5NB 2UZBB 4FX3B 5HQ0B 2I53A 1BU2A 3M03A 4OR5B 4ZGDB 2AHJB 1D3UB 2G9XB 4CFUB 5IDPB 4CFVB 4EOIB 3BG9A 1C9BA 4II5B 4BCPB 3O0GD 5EJCA 1OIYB 5BNJB 2BPMB 3VYHB 1H27B 4ELLA 1FVVB 2UZLB 2C5VB 2CCHB 2C4GB 3K7AM 4OB2B 4CFWB 4L3UA 4BBSM 2ZCFB 2PJQA 5IHYA 3GTMS 1OKVB 2WPAB 1GH6B 4EONB 2KMGA 4ROEA 1FKMA 1P68A 1UGRB 4BCIB 1H1QB 2X1NB 2ZPEB 3EJ1B 1PKDB 4EC8B 3BHTB 1XO2A 2W9FA 4AKIA 5CEIB 1OIUB 4ZGEB 1IREB 1E7PA 2BS4A 5CYIB 1UGQB 3HHTB 3HO8A 4YC3B 1JSTB 2ZPIB 1KXUA 1ENWA 3A8OB 3VJFA 3HB9A 2D0QB 2W9ZA 3EIDB 2WMBB 1N4MA 2V22B 2WXVB 2IW6B 3DJBA 2UZDB 2CYZB 2BS2A 1ZP2A 2QF7A 5ICPB 3A8GB 4EOLB 3RGFB 5DQWA 2R7GA 4ELJA 5HVYB 1AD6A 2EUFA 2DD4B 4CXAB 4OB0B 4BCJB 2WJ9A 3BHVB 3X24B 4CQ4A 1UGSB 4BCNB 3B57A 1V29B 1GY3B 4EOOB 4ZGJB 2QDJA 2PHGA 3QHWB 1W98B 2WIPB 1VYWB 2UUEB 4NSTB 4IMYB 4MFEA 3KHIA 4UN0A 4M6VA 2QGSA 1UNGD 2DD5B 1F5QB 3TNIB 2CZ6B 2WHBB 4EOKB 4CFUD 4F6SB 3QYEA 4YOZA 4JX6A 3BLRB 4YOOA 3QYBA 2WFYB 4BY1X 2WMAB 4BXXX 3DOGB 2BS3A 4GN0A 3VYGB 3TNHB 3QWLA 1H1RB 3LQ5B 3QZ5B 4OB3B 2DPPB 2ZZDB 1H4LD 3BHUB 2CZ0B 3MY5B 4BCKB 2DXCB 2C5OB 5I5ZB 3G33B 4KRDB 4HLQA 4FM4B 4F7SB 1TFBA 4I3ZB 2CCIB 3TW7A 3BG3A 1QLBA 2CZ7B 2WEVB 4RODA 4F6WB 2IVXA 1QMZB 4ROCA 3BG5A 2LW4A 1VOLA 5HNBB 5HBJB 4BCMB 4F7LB 2CZ1B 4HNTA 1OL1B 5HBHB 4CRLB 3BLQB 4BCQB 3HZJA 1TD6A 4BBRM 3MIAB 5LMKB 1OL2B 2W96A 4EOSB 3F5XB 4G6LB 3NDQA 2PK2A 1AHJB 1OKWB 4JX5A 1JOWA 2QFZA 2QDYB 3DL1A 1H1SB 3QYGB 1VINA 4EORB 1H24B 4BCQD 3TN8B 5ACBA 4QSHA 2F2CA 2W99A 4HL4A 2ZPGB 1GUXA 4AKHA 5IDNB 4JX4A 4BCND 4BCOB 4NC6A 4MIMA 3MY1B 3X20B 1H25B 4EC9B 1JKWA 4F70B 2PK9B 2C6TB 1UNLD 5HBEB 4HNVA 4MFDA 4BCFB 2JUAA 4OB1B 3DDPB 2PMIB 1P5EB 2W2HA 3X28B 1OI9B 3X26B 4CFNB 2KR6A 4BY7X 3VKGA 2ZPFB 3WVDB 2BKZB 5FGKB 1URCB 1UGPB 3DTOA 4LOCA 3A8LB 2IW8B 2IW9B 1JSUB 4Y72B 4AI6A 4CFMB 3X25B
chains in the Genus database with same CATH topology
1TD6A 4GN0A 4L3UA 4CQ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TD6 A; 
#chains in the Genus database with same CATH topology
 1H26 B;  2G77 A;  1G3N C;  5DQV A;  3VKH A;  4EOM B;  5L2W B;  4AKG A;  1V9V A;  2QQ8 A;  3TNW B;  2ZPB B;  1UNH D;  3WVE B;  4EOQ B;  4KRC B;  2JGZ B;  3QZ9 B;  2C5X B;  4F7J B;  3A8H B;  2DXB B;  2I40 B;  5LQF B;  1H1P B;  4TTH A;  4CFX B;  2DME A;  4Z6Y A;  3HBL A;  4OGR B;  3QYH B;  3EOC B;  3QHR B;  1O9K B;  2UZE B;  3TW6 A;  3POM A;  1GUX B;  4HNU A;  3A8M B;  1FIN B;  3H4C A;  1AIS B;  2CJM B;  3QXE B;  5EFQ B;  4F6U B;  4YOS A;  4BCG B;  2ZPH B;  4BCM D;  3DDQ B;  3MI9 B;  2WIH B;  5IF1 B;  1E9H B;  3PO3 S;  4BCH B;  2IN3 A;  4EOP B;  2M9X A;  4EOJ B;  1H28 B;  4F7N B;  3BLH B;  1OGU B;  2B9R A;  1O9K A;  2C5N B;  2UZB B;  4FX3 B;  5HQ0 B;  2I53 A;  1BU2 A;  3M03 A;  4OR5 B;  4ZGD B;  2AHJ B;  1D3U B;  2G9X B;  4CFU B;  5IDP B;  4CFV B;  4EOI B;  3BG9 A;  1C9B A;  4II5 B;  4BCP B;  3O0G D;  5EJC A;  1OIY B;  5BNJ B;  2BPM B;  3VYH B;  1H27 B;  4ELL A;  1FVV B;  2UZL B;  2C5V B;  2CCH B;  2C4G B;  3K7A M;  4OB2 B;  4CFW B;  4L3U A;  4BBS M;  2ZCF B;  2PJQ A;  5IHY A;  3GTM S;  1OKV B;  2WPA B;  1GH6 B;  4EON B;  2KMG A;  4ROE A;  1FKM A;  1P68 A;  1UGR B;  4BCI B;  1H1Q B;  2X1N B;  2ZPE B;  3EJ1 B;  1PKD B;  4EC8 B;  3BHT B;  1XO2 A;  2W9F A;  4AKI A;  5CEI B;  1OIU B;  4ZGE B;  1IRE B;  1E7P A;  2BS4 A;  5CYI B;  1UGQ B;  3HHT B;  3HO8 A;  4YC3 B;  1JST B;  2ZPI B;  1KXU A;  1ENW A;  3A8O B;  3VJF A;  3HB9 A;  2D0Q B;  2W9Z A;  3EID B;  2WMB B;  1N4M A;  2V22 B;  2WXV B;  2IW6 B;  3DJB A;  2UZD B;  2CYZ B;  2BS2 A;  1ZP2 A;  2QF7 A;  5ICP B;  3A8G B;  4EOL B;  3RGF B;  5DQW A;  2R7G A;  4ELJ A;  5HVY B;  1AD6 A;  2EUF A;  2DD4 B;  4CXA B;  4OB0 B;  4BCJ B;  2WJ9 A;  3BHV B;  3X24 B;  4CQ4 A;  1UGS B;  4BCN B;  3B57 A;  1V29 B;  1GY3 B;  4EOO B;  4ZGJ B;  2QDJ A;  2PHG A;  3QHW B;  1W98 B;  2WIP B;  1VYW B;  2UUE B;  4NST B;  4IMY B;  4MFE A;  3KHI A;  4UN0 A;  4M6V A;  2QGS A;  1UNG D;  2DD5 B;  1F5Q B;  3TNI B;  2CZ6 B;  2WHB B;  4EOK B;  4CFU D;  4F6S B;  3QYE A;  4YOZ A;  4JX6 A;  3BLR B;  4YOO A;  3QYB A;  2WFY B;  4BY1 X;  2WMA B;  4BXX X;  3DOG B;  2BS3 A;  4GN0 A;  3VYG B;  3TNH B;  3QWL A;  1H1R B;  3LQ5 B;  3QZ5 B;  4OB3 B;  2DPP B;  2ZZD B;  1H4L D;  3BHU B;  2CZ0 B;  3MY5 B;  4BCK B;  2DXC B;  2C5O B;  5I5Z B;  3G33 B;  4KRD B;  4HLQ A;  4FM4 B;  4F7S B;  1TFB A;  4I3Z B;  2CCI B;  3TW7 A;  3BG3 A;  1QLB A;  2CZ7 B;  2WEV B;  4ROD A;  4F6W B;  2IVX A;  1QMZ B;  4ROC A;  3BG5 A;  2LW4 A;  1VOL A;  5HNB B;  5HBJ B;  4BCM B;  4F7L B;  2CZ1 B;  4HNT A;  1OL1 B;  5HBH B;  4CRL B;  3BLQ B;  4BCQ B;  3HZJ A;  1TD6 A;  4BBR M;  3MIA B;  5LMK B;  1OL2 B;  2W96 A;  4EOS B;  3F5X B;  4G6L B;  3NDQ A;  2PK2 A;  1AHJ B;  1OKW B;  4JX5 A;  1JOW A;  2QFZ A;  2QDY B;  3DL1 A;  1H1S B;  3QYG B;  1VIN A;  4EOR B;  1H24 B;  4BCQ D;  3TN8 B;  5ACB A;  4QSH A;  2F2C A;  2W99 A;  4HL4 A;  2ZPG B;  1GUX A;  4AKH A;  5IDN B;  4JX4 A;  4BCN D;  4BCO B;  4NC6 A;  4MIM A;  3MY1 B;  3X20 B;  1H25 B;  4EC9 B;  1JKW A;  4F70 B;  2PK9 B;  2C6T B;  1UNL D;  5HBE B;  4HNV A;  4MFD A;  4BCF B;  2JUA A;  4OB1 B;  3DDP B;  2PMI B;  1P5E B;  2W2H A;  3X28 B;  1OI9 B;  3X26 B;  4CFN B;  2KR6 A;  4BY7 X;  3VKG A;  2ZPF B;  3WVD B;  2BKZ B;  5FGK B;  1URC B;  1UGP B;  3DTO A;  4LOC A;  3A8L B;  2IW8 B;  2IW9 B;  1JSU B;  4Y72 B;  4AI6 A;  4CFM B;  3X25 B; 
#chains in the Genus database with same CATH homology
 1TD6 A;  4GN0 A;  4L3U A;  4CQ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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