1TDPA

Nmr solution structure of the carnobacteriocin b2 immunity protein
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
111
structure length
111
Chain Sequence
MDIKSQTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPSSMLTIYTQIQKDIKNGNIDTEKLRKYEIAKGLMSVPYIYF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords carnobacteriocin B2 immunity protein
publication title NMR Solution Structure of ImB2, a Protein Conferring Immunity to Antimicrobial Activity of the Type IIa Bacteriocin, Carnobacteriocin B2
pubmed doi rcsb
source organism Carnobacterium maltaromaticum
total genus 25
structure length 111
sequence length 111
ec nomenclature
pdb deposition date 2004-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08951 EntA_Immun Enterocin A Immunity
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.50 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) Ta0600-like 1tdpA00
2QZGA 2QSBA 2FU2A 2BL7A 1TDPA 2BL8A
chains in the Genus database with same CATH superfamily
4HFVA 2KKMA 2P22B 3JSBA 3B55A 4YZ9A 2QGMA 3IAS1 1YO7A 3Q8DA 4OAUC 2ZRRA 4PL3A 3IAM1 2ZW3A 2K19A 4G75A 3DA3A 1U5KA 3LJ0A 4DWLA 3DO9A 2HGKA 3FBVA 3KP9A 2A2CA 2JB2A 4O1OA 2YFBA 4Q9VA 3FNBA 2BL8A 2GSCA 1TDPA 4YZCA 2IP6A 2XMXA 2JBWA 2L1LB 1W3SA 4PL4A 4G76A 4Z7GA 4O1PA 4GXTA 4NV2A 2BL7A 2ETDA 2E8GA 3AJFA 4AS3A 4YZDA 2MJFB 4HEA1 1SJ8A 2V6EA 2CAZB 3P23A 3SDJA 2F66B 3FVVA 4I1TA 2XTRA 4AS2A 2F6MB 3UITA 5HGIA 2QZGA 4OAVB 2RADA 3VA9A 2YFAA 1JQOA 3L0IA 4JCVE 2FUG1 4PL5A 2XTQA 2JB3A 3DA4A 2RIOA 2FEFA 2QSBA 2FU2A 2RLDA 2V1CC 2A2DA 4Z7HA 3F4MA 3I9V1 4U6RA 3LJ1A 4NV5A 2JB1A 3LJ2A 2JAEA 5LNK1
chains in the Genus database with same CATH topology
2QZGA 2QSBA 2FU2A 2BL7A 1TDPA 2BL8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QZG A;  2QSB A;  2FU2 A;  2BL7 A;  1TDP A;  2BL8 A; 
#chains in the Genus database with same CATH topology
 4HFV A;  2KKM A;  2P22 B;  3JSB A;  3B55 A;  4YZ9 A;  2QGM A;  3IAS 1;  1YO7 A;  3Q8D A;  4OAU C;  2ZRR A;  4PL3 A;  3IAM 1;  2ZW3 A;  2K19 A;  4G75 A;  3DA3 A;  1U5K A;  3LJ0 A;  4DWL A;  3DO9 A;  2HGK A;  3FBV A;  3KP9 A;  2A2C A;  2JB2 A;  4O1O A;  2YFB A;  4Q9V A;  3FNB A;  2BL8 A;  2GSC A;  1TDP A;  4YZC A;  2IP6 A;  2XMX A;  2JBW A;  2L1L B;  1W3S A;  4PL4 A;  4G76 A;  4Z7G A;  4O1P A;  4GXT A;  4NV2 A;  2BL7 A;  2ETD A;  2E8G A;  3AJF A;  4AS3 A;  4YZD A;  2MJF B;  4HEA 1;  1SJ8 A;  2V6E A;  2CAZ B;  3P23 A;  3SDJ A;  2F66 B;  3FVV A;  4I1T A;  2XTR A;  4AS2 A;  2F6M B;  3UIT A;  5HGI A;  2QZG A;  4OAV B;  2RAD A;  3VA9 A;  2YFA A;  1JQO A;  3L0I A;  4JCV E;  2FUG 1;  4PL5 A;  2XTQ A;  2JB3 A;  3DA4 A;  2RIO A;  2FEF A;  2QSB A;  2FU2 A;  2RLD A;  2V1C C;  2A2D A;  4Z7H A;  3F4M A;  3I9V 1;  4U6R A;  3LJ1 A;  4NV5 A;  2JB1 A;  3LJ2 A;  2JAE A;  5LNK 1; 
#chains in the Genus database with same CATH homology
 2QZG A;  2QSB A;  2FU2 A;  2BL7 A;  1TDP A;  2BL8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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