The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
179
|
sequence length |
474
|
structure length |
474
|
Chain Sequence |
b'AAPILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIERRGYPAPIVNHNLRQKQFKALYNQLKAAI'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair
pubmed doi rcsb |
| molecule keywords |
5'-D(*AP*TP*CP*GP*GP*CP*T*(TCP)P*CP*GP*C)-3'
|
| source organism |
Synechococcus elongatus
|
| molecule tags |
Lyase/dna
|
| total genus |
179
|
| structure length |
474
|
| sequence length |
474
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
4.1.99.3: Deoxyribodipyrimidine photo-lyase. |
| pdb deposition date | 2004-05-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00875 | DNA_photolyase | DNA photolyase |
| A | PF03441 | FAD_binding_7 | FAD binding domain of DNA photolyase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 | DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | ||
| Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs |
