1TGXA

X-ray structure at 1.55 a of toxin gamma, a cardiotoxin from naja nigricollis venom. crystal packing reveals a model for insertion into membranes
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
60
structure length
60
Chain Sequence
LKCNQLIPPFWKTCPKGKNLCYKMTMRAAPMVPVKRGCIDVCPKSSLLIKYMCCNTDKCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cytotoxin
molecule keywords GAMMA-CARDIOTOXIN
publication title X-ray structure at 1.55 A of toxin gamma, a cardiotoxin from Naja nigricollis venom. Crystal packing reveals a model for insertion into membranes.
pubmed doi rcsb
source organism Naja nigricollis
total genus 10
structure length 60
sequence length 60
chains with identical sequence B, C
ec nomenclature
pdb deposition date 1993-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1tgxA00
2JVEA 2HLRA 1FFJA 4RUDA 2QJBC 1H0JA 1CDSA 1BTEA 2H64C 3LAQU 2GOOC 3U74U 2NBTA 5DO6A 1CXOA 1KFHA 1F94A 1FRAA 4OM5A 1NEAA 2H8UA 1JGKA 1ERAA 2L03A 2MJ4A 1CCQA 3NEQA 2ABXA 1RGJA 2MJYA 3HH7A 4QTIU 1LJZA 1KS6A 1NTNA 2H7ZA 2H5FA 2ERAA 6EBXA 1ZADA 3VTSA 1S4YA 2QJ9C 1IDHA 4FAOC 1NORA 4DO8A 1M9ZA 1HC9B 3BT1U 1CRFA 1LXGA 2L5SA 2N99A 2I9BE 1G6MA 2CRSA 1LXHA 2PJYC 1IDIA 1ONJA 2FD6U 4HQPF 1IQ9A 3QB4B 2BTXA 1ABTA 1ES7B 1ERGA 2OFSA 1CB9A 1VB0A 1IDLA 4LFTA 1TFSA 2H7ZB 3NH7A 4AEAA 1CDRA 1FF4A 1HC9A 2BHIA 1FSCA 1QKDA 1KU6B 2HLQA 5IMTD 1DRSA 1IKCA 5IMYC 1CXNA 1HAAA 1NTXA 4ZQYA 2UX2A 1KBSA 1NYSA 1KL8A 1MR6A 4BIKB 1COEA 1CVOA 1QM7A 4BDTB 1JBDA 1KBAA 1KTZB 1PLOA 1F8UB 1TXBA 2MFAA 4EY8B 3BT2U 3NDSA 3KFDI 2UWRA 1B41B 1FASA 3EVSC 2QJAC 1W6BA 3EBXA 2CCXA 4XJJA 1REWC 1TGXA 2CDXA 2H64B 2GOOB 1HAJA 1V6PA 3PLCA 3FEVA 1FSSB 1NYUA 1CDQA 1YWHA 1LSIA 5DZ5A 3U73U 2LCRA 2H62C 3KFDE 2MJ0A 1L4WA 2J8BA 1QKEA 2LA1A 1KXIA 2CRTA 1JE9A 1CODA 1I02A 2X8BB 1BXPA 4IYEA 2MUOA 1KC4A 2MHYA 2K3GA 1UG4A 1LX5B 2CTXA 5DU1A 1IDGA 4UY2C 4OM4A 1MAHF 1CHVS 1CREA 1XT3A 1IK8A 1CDTA 2QC1A 1RL5A 1CTXA 2PJYB 2VLWA 5EBXA 1TXAA 2MUPA 1IJCA 1NXBA 4FAOE 4P7UA 2JQPA 1HOYA 1KBTA 3ERAA 2H62D
chains in the Genus database with same CATH superfamily
2JVEA 2HLRA 1FFJA 4RUDA 2QJBC 1H0JA 1CDSA 1BTEA 2H64C 3LAQU 2GOOC 3U74U 2NBTA 5DO6A 1CXOA 1KFHA 1F94A 1FRAA 4OM5A 1NEAA 2H8UA 1JGKA 1ERAA 2L03A 2MJ4A 1CCQA 3NEQA 2ABXA 1RGJA 2MJYA 3HH7A 4QTIU 1LJZA 1KS6A 1NTNA 2H7ZA 2H5FA 2ERAA 6EBXA 1ZADA 3VTSA 1S4YA 2QJ9C 1IDHA 4FAOC 1NORA 4DO8A 1M9ZA 1HC9B 3BT1U 1CRFA 1LXGA 2L5SA 2N99A 2I9BE 1G6MA 2CRSA 1LXHA 2PJYC 1IDIA 1ONJA 2FD6U 4HQPF 1IQ9A 3QB4B 2BTXA 1ABTA 1ES7B 1ERGA 2OFSA 1CB9A 1VB0A 1IDLA 4LFTA 1TFSA 2H7ZB 3NH7A 4AEAA 4KSNA 1FF4A 1HC9A 2BHIA 1CDRA 1FSCA 1QKDA 1KU6B 2HLQA 5IMTD 1DRSA 1IKCA 5IMYC 1CXNA 1HAAA 1NTXA 4ZQYA 2UX2A 1KBSA 1NYSA 1KL8A 1MR6A 4BIKB 1COEA 1CVOA 1QM7A 4BDTB 1JBDA 1KBAA 1KTZB 1PLOA 1F8UB 1TXBA 2MFAA 4EY8B 3BT2U 3NDSA 3KFDI 2UWRA 1B41B 1FASA 3EVSC 2QJAC 1W6BA 3EBXA 2CCXA 4XJJA 1REWC 1TGXA 2CDXA 2H64B 2GOOB 1HAJA 1V6PA 3PLCA 3FEVA 1FSSB 1NYUA 1CDQA 1YWHA 1LSIA 5DZ5A 3U73U 2LCRA 2H62C 3KFDE 2MJ0A 1L4WA 2J8BA 1QKEA 2LA1A 1KXIA 2CRTA 1JE9A 1CODA 1I02A 2X8BB 1BXPA 4IYEA 2MUOA 1KC4A 2MHYA 2K3GA 1UG4A 1LX5B 2CTXA 5DU1A 1IDGA 4UY2C 4OM4A 1MAHF 1CHVS 1CREA 1XT3A 1IK8A 1CDTA 2QC1A 1RL5A 1CTXA 2PJYB 2VLWA 5EBXA 1TXAA 2MUPA 1IJCA 1NXBA 4FAOE 4P7UA 2JQPA 1HOYA 1KBTA 3ERAA 2H62D
chains in the Genus database with same CATH topology
2JVEA 2HLRA 1FFJA 4RUDA 2QJBC 1H0JA 1CDSA 1BTEA 2H64C 3LAQU 2GOOC 3U74U 2NBTA 5DO6A 1CXOA 1KFHA 1F94A 1FRAA 4OM5A 1NEAA 2H8UA 1JGKA 1ERAA 2L03A 2MJ4A 1CCQA 3NEQA 2ABXA 1RGJA 2MJYA 3HH7A 4QTIU 1LJZA 1KS6A 1NTNA 2H7ZA 2H5FA 2ERAA 6EBXA 1ZADA 3VTSA 1S4YA 2QJ9C 1IDHA 4FAOC 1NORA 4DO8A 1M9ZA 1HC9B 3BT1U 1CRFA 1LXGA 2L5SA 2N99A 2I9BE 1G6MA 2CRSA 1LXHA 2PJYC 1IDIA 1ONJA 2FD6U 4HQPF 1IQ9A 3QB4B 2BTXA 1ABTA 1ES7B 1ERGA 2OFSA 1CB9A 1VB0A 1IDLA 4LFTA 1TFSA 2H7ZB 3NH7A 4AEAA 4KSNA 1FF4A 1HC9A 2BHIA 1CDRA 1FSCA 1QKDA 1KU6B 2HLQA 5IMTD 1DRSA 1IKCA 5IMYC 1CXNA 1HAAA 1NTXA 4ZQYA 2UX2A 1KBSA 1NYSA 1KL8A 1MR6A 4BIKB 1COEA 1CVOA 1QM7A 4BDTB 1JBDA 1KBAA 1KTZB 1PLOA 1F8UB 1TXBA 2MFAA 4EY8B 3BT2U 3NDSA 3KFDI 2UWRA 1B41B 1FASA 3EVSC 2QJAC 1W6BA 3EBXA 2CCXA 4XJJA 1REWC 1TGXA 2CDXA 2H64B 2GOOB 1HAJA 1V6PA 3PLCA 3FEVA 1FSSB 1NYUA 1CDQA 1YWHA 1LSIA 5DZ5A 3U73U 2LCRA 2H62C 3KFDE 2MJ0A 1L4WA 2J8BA 1QKEA 2LA1A 1KXIA 2CRTA 1JE9A 1CODA 1I02A 2X8BB 1BXPA 4IYEA 2MUOA 1KC4A 2MHYA 2K3GA 1UG4A 1LX5B 2CTXA 5DU1A 1IDGA 4UY2C 4OM4A 1MAHF 1CHVS 1CREA 1XT3A 1IK8A 1CDTA 2QC1A 1RL5A 1CTXA 2PJYB 2VLWA 5EBXA 1TXAA 2MUPA 1IJCA 1NXBA 4FAOE 4P7UA 2JQPA 1HOYA 1KBTA 3ERAA 2H62D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JVE A;  2HLR A;  1FFJ A;  4RUD A;  2QJB C;  1H0J A;  1CDS A;  1BTE A;  2H64 C;  3LAQ U;  2GOO C;  3U74 U;  2NBT A;  5DO6 A;  1CXO A;  1KFH A;  1F94 A;  1FRA A;  4OM5 A;  1NEA A;  2H8U A;  1JGK A;  1ERA A;  2L03 A;  2MJ4 A;  1CCQ A;  3NEQ A;  2ABX A;  1RGJ A;  2MJY A;  3HH7 A;  4QTI U;  1LJZ A;  1KS6 A;  1NTN A;  2H7Z A;  2H5F A;  2ERA A;  6EBX A;  1ZAD A;  3VTS A;  1S4Y A;  2QJ9 C;  1IDH A;  4FAO C;  1NOR A;  4DO8 A;  1M9Z A;  1HC9 B;  3BT1 U;  1CRF A;  1LXG A;  2L5S A;  2N99 A;  2I9B E;  1G6M A;  2CRS A;  1LXH A;  2PJY C;  1IDI A;  1ONJ A;  2FD6 U;  4HQP F;  1IQ9 A;  3QB4 B;  2BTX A;  1ABT A;  1ES7 B;  1ERG A;  2OFS A;  1CB9 A;  1VB0 A;  1IDL A;  4LFT A;  1TFS A;  2H7Z B;  3NH7 A;  4AEA A;  1CDR A;  1FF4 A;  1HC9 A;  2BHI A;  1FSC A;  1QKD A;  1KU6 B;  2HLQ A;  5IMT D;  1DRS A;  1IKC A;  5IMY C;  1CXN A;  1HAA A;  1NTX A;  4ZQY A;  2UX2 A;  1KBS A;  1NYS A;  1KL8 A;  1MR6 A;  4BIK B;  1COE A;  1CVO A;  1QM7 A;  4BDT B;  1JBD A;  1KBA A;  1KTZ B;  1PLO A;  1F8U B;  1TXB A;  2MFA A;  4EY8 B;  3BT2 U;  3NDS A;  3KFD I;  2UWR A;  1B41 B;  1FAS A;  3EVS C;  2QJA C;  1W6B A;  3EBX A;  2CCX A;  4XJJ A;  1REW C;  1TGX A;  2CDX A;  2H64 B;  2GOO B;  1HAJ A;  1V6P A;  3PLC A;  3FEV A;  1FSS B;  1NYU A;  1CDQ A;  1YWH A;  1LSI A;  5DZ5 A;  3U73 U;  2LCR A;  2H62 C;  3KFD E;  2MJ0 A;  1L4W A;  2J8B A;  1QKE A;  2LA1 A;  1KXI A;  2CRT A;  1JE9 A;  1COD A;  1I02 A;  2X8B B;  1BXP A;  4IYE A;  2MUO A;  1KC4 A;  2MHY A;  2K3G A;  1UG4 A;  1LX5 B;  2CTX A;  5DU1 A;  1IDG A;  4UY2 C;  4OM4 A;  1MAH F;  1CHV S;  1CRE A;  1XT3 A;  1IK8 A;  1CDT A;  2QC1 A;  1RL5 A;  1CTX A;  2PJY B;  2VLW A;  5EBX A;  1TXA A;  2MUP A;  1IJC A;  1NXB A;  4FAO E;  4P7U A;  2JQP A;  1HOY A;  1KBT A;  3ERA A;  2H62 D; 
#chains in the Genus database with same CATH topology
 2JVE A;  2HLR A;  1FFJ A;  4RUD A;  2QJB C;  1H0J A;  1CDS A;  1BTE A;  2H64 C;  3LAQ U;  2GOO C;  3U74 U;  2NBT A;  5DO6 A;  1CXO A;  1KFH A;  1F94 A;  1FRA A;  4OM5 A;  1NEA A;  2H8U A;  1JGK A;  1ERA A;  2L03 A;  2MJ4 A;  1CCQ A;  3NEQ A;  2ABX A;  1RGJ A;  2MJY A;  3HH7 A;  4QTI U;  1LJZ A;  1KS6 A;  1NTN A;  2H7Z A;  2H5F A;  2ERA A;  6EBX A;  1ZAD A;  3VTS A;  1S4Y A;  2QJ9 C;  1IDH A;  4FAO C;  1NOR A;  4DO8 A;  1M9Z A;  1HC9 B;  3BT1 U;  1CRF A;  1LXG A;  2L5S A;  2N99 A;  2I9B E;  1G6M A;  2CRS A;  1LXH A;  2PJY C;  1IDI A;  1ONJ A;  2FD6 U;  4HQP F;  1IQ9 A;  3QB4 B;  2BTX A;  1ABT A;  1ES7 B;  1ERG A;  2OFS A;  1CB9 A;  1VB0 A;  1IDL A;  4LFT A;  1TFS A;  2H7Z B;  3NH7 A;  4AEA A;  4KSN A;  1FF4 A;  1HC9 A;  2BHI A;  1CDR A;  1FSC A;  1QKD A;  1KU6 B;  2HLQ A;  5IMT D;  1DRS A;  1IKC A;  5IMY C;  1CXN A;  1HAA A;  1NTX A;  4ZQY A;  2UX2 A;  1KBS A;  1NYS A;  1KL8 A;  1MR6 A;  4BIK B;  1COE A;  1CVO A;  1QM7 A;  4BDT B;  1JBD A;  1KBA A;  1KTZ B;  1PLO A;  1F8U B;  1TXB A;  2MFA A;  4EY8 B;  3BT2 U;  3NDS A;  3KFD I;  2UWR A;  1B41 B;  1FAS A;  3EVS C;  2QJA C;  1W6B A;  3EBX A;  2CCX A;  4XJJ A;  1REW C;  1TGX A;  2CDX A;  2H64 B;  2GOO B;  1HAJ A;  1V6P A;  3PLC A;  3FEV A;  1FSS B;  1NYU A;  1CDQ A;  1YWH A;  1LSI A;  5DZ5 A;  3U73 U;  2LCR A;  2H62 C;  3KFD E;  2MJ0 A;  1L4W A;  2J8B A;  1QKE A;  2LA1 A;  1KXI A;  2CRT A;  1JE9 A;  1COD A;  1I02 A;  2X8B B;  1BXP A;  4IYE A;  2MUO A;  1KC4 A;  2MHY A;  2K3G A;  1UG4 A;  1LX5 B;  2CTX A;  5DU1 A;  1IDG A;  4UY2 C;  4OM4 A;  1MAH F;  1CHV S;  1CRE A;  1XT3 A;  1IK8 A;  1CDT A;  2QC1 A;  1RL5 A;  1CTX A;  2PJY B;  2VLW A;  5EBX A;  1TXA A;  2MUP A;  1IJC A;  1NXB A;  4FAO E;  4P7U A;  2JQP A;  1HOY A;  1KBT A;  3ERA A;  2H62 D; 
#chains in the Genus database with same CATH homology
 2JVE A;  2HLR A;  1FFJ A;  4RUD A;  2QJB C;  1H0J A;  1CDS A;  1BTE A;  2H64 C;  3LAQ U;  2GOO C;  3U74 U;  2NBT A;  5DO6 A;  1CXO A;  1KFH A;  1F94 A;  1FRA A;  4OM5 A;  1NEA A;  2H8U A;  1JGK A;  1ERA A;  2L03 A;  2MJ4 A;  1CCQ A;  3NEQ A;  2ABX A;  1RGJ A;  2MJY A;  3HH7 A;  4QTI U;  1LJZ A;  1KS6 A;  1NTN A;  2H7Z A;  2H5F A;  2ERA A;  6EBX A;  1ZAD A;  3VTS A;  1S4Y A;  2QJ9 C;  1IDH A;  4FAO C;  1NOR A;  4DO8 A;  1M9Z A;  1HC9 B;  3BT1 U;  1CRF A;  1LXG A;  2L5S A;  2N99 A;  2I9B E;  1G6M A;  2CRS A;  1LXH A;  2PJY C;  1IDI A;  1ONJ A;  2FD6 U;  4HQP F;  1IQ9 A;  3QB4 B;  2BTX A;  1ABT A;  1ES7 B;  1ERG A;  2OFS A;  1CB9 A;  1VB0 A;  1IDL A;  4LFT A;  1TFS A;  2H7Z B;  3NH7 A;  4AEA A;  4KSN A;  1FF4 A;  1HC9 A;  2BHI A;  1CDR A;  1FSC A;  1QKD A;  1KU6 B;  2HLQ A;  5IMT D;  1DRS A;  1IKC A;  5IMY C;  1CXN A;  1HAA A;  1NTX A;  4ZQY A;  2UX2 A;  1KBS A;  1NYS A;  1KL8 A;  1MR6 A;  4BIK B;  1COE A;  1CVO A;  1QM7 A;  4BDT B;  1JBD A;  1KBA A;  1KTZ B;  1PLO A;  1F8U B;  1TXB A;  2MFA A;  4EY8 B;  3BT2 U;  3NDS A;  3KFD I;  2UWR A;  1B41 B;  1FAS A;  3EVS C;  2QJA C;  1W6B A;  3EBX A;  2CCX A;  4XJJ A;  1REW C;  1TGX A;  2CDX A;  2H64 B;  2GOO B;  1HAJ A;  1V6P A;  3PLC A;  3FEV A;  1FSS B;  1NYU A;  1CDQ A;  1YWH A;  1LSI A;  5DZ5 A;  3U73 U;  2LCR A;  2H62 C;  3KFD E;  2MJ0 A;  1L4W A;  2J8B A;  1QKE A;  2LA1 A;  1KXI A;  2CRT A;  1JE9 A;  1COD A;  1I02 A;  2X8B B;  1BXP A;  4IYE A;  2MUO A;  1KC4 A;  2MHY A;  2K3G A;  1UG4 A;  1LX5 B;  2CTX A;  5DU1 A;  1IDG A;  4UY2 C;  4OM4 A;  1MAH F;  1CHV S;  1CRE A;  1XT3 A;  1IK8 A;  1CDT A;  2QC1 A;  1RL5 A;  1CTX A;  2PJY B;  2VLW A;  5EBX A;  1TXA A;  2MUP A;  1IJC A;  1NXB A;  4FAO E;  4P7U A;  2JQP A;  1HOY A;  1KBT A;  3ERA A;  2H62 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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