1TILB

Crystal structures of the adp and atp bound forms of the bacillus anti-sigma factor spoiiab in complex with the anti-anti-sigma spoiiaa:poised for phosphorylation complex with atp, crystal form ii
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
117
structure length
117
Chain Sequence
HMSLAIDLEVKQDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDASGLGVILGRYKQIKNVGGQMVVCAVSPAVKRLFDMSGLFKIIRVEADEQFALQALGVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Anti-sigma F factor
publication title Crystal Structures of the ADP and ATP Bound Forms of the Bacillus Anti-sigma Factor SpoIIAB in Complex with the Anti-anti-sigma SpoIIAA.
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 38
structure length 117
sequence length 117
chains with identical sequence D, F
ec nomenclature
pdb deposition date 2004-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1tilB00
3LLOA 3NY7A 4HYLA 5EUZA 1BUZA 4XS5A 3MGLA 3IHBA 1TH8B 5EUXA 1TILB 3T6OA 1SBOA 5EUSA 3ZTBA 3IHAA 5EUWA 4DGHA 1AUZA 1T6RA 3IH8A 1H4ZA 2KLNA 3OIRA 3OIZA 1THNB 1TIDB 5EZBA 1H4YA 3ZXNA 1VC1A 3IF5A 3AGEA 3AGDA 3LKLA 2KA5A 4QTPA 5EUUA 1H4XA 3F43A 2VY9A 3IH9A 4DGFA
chains in the Genus database with same CATH superfamily
3VSEA 1K32A 2OASA 1N6FA 5EUSA 3IHAA 3LDFA 3GMFA 1T6RA 4L8KA 1THNB 3GVLA 5EZBA 3ZXNA 3K50A 3IF5A 1V0FA 2ZOAA 3IH9A 1FCFA 1WXWA 5EUZA 4AE2A 2DXLA 4XS5A 3MGLA 1V0EA 3D3UA 3IHBA 3DUPA 1HF2A 3EH7A 1SBOA 2DXNA 3GVJA 3ZTBA 1AUZA 3IH8A 2KLNA 4L1CA 1H4YA 2B78A 3AGEA 1FC7A 1J7XA 5EUUA 3F43A 2VY9A 4HIZA 4AEJA 2AS0A 3LLOA 4JC0A 3V97A 3DJAA 1BUZA 1N6EA 3T6OA 2CWWA 1FC6A 5EUWA 4DGHA 3QDQA 3JU4A 1H4ZA 3GK7A 3GHFA 1VC1A 3MOGA 3AGDA 3DORA 3D03A 4GHNA 2KA5A 3C0KA 4QTPA 4DMGA 1H4XA 3NY7A 4HYLA 1WXXA 3V8VA 2RRLA 1TH8B 1N6DA 5EUXA 1TILB 3OIRA 3OIZA 1TIDB 1FC9A 3GVKA 1BPLA 2ZO9B 3LKLA 4DGFA
chains in the Genus database with same CATH topology
3LLOA 3NY7A 4HYLA 5EUZA 1BUZA 4XS5A 3MGLA 3IHBA 1TH8B 5EUXA 1TILB 3T6OA 1SBOA 5EUSA 3ZTBA 3IHAA 5EUWA 4DGHA 1AUZA 1T6RA 3IH8A 1H4ZA 2KLNA 3OIRA 3OIZA 1THNB 1TIDB 5EZBA 1H4YA 3ZXNA 1VC1A 3IF5A 3AGEA 3AGDA 3LKLA 2KA5A 4QTPA 5EUUA 1H4XA 3F43A 2VY9A 3IH9A 4DGFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LLO A;  3NY7 A;  4HYL A;  5EUZ A;  1BUZ A;  4XS5 A;  3MGL A;  3IHB A;  1TH8 B;  5EUX A;  1TIL B;  3T6O A;  1SBO A;  5EUS A;  3ZTB A;  3IHA A;  5EUW A;  4DGH A;  1AUZ A;  1T6R A;  3IH8 A;  1H4Z A;  2KLN A;  3OIR A;  3OIZ A;  1THN B;  1TID B;  5EZB A;  1H4Y A;  3ZXN A;  1VC1 A;  3IF5 A;  3AGE A;  3AGD A;  3LKL A;  2KA5 A;  4QTP A;  5EUU A;  1H4X A;  3F43 A;  2VY9 A;  3IH9 A;  4DGF A; 
#chains in the Genus database with same CATH topology
 3VSE A;  1K32 A;  2OAS A;  1N6F A;  5EUS A;  3IHA A;  3LDF A;  3GMF A;  1T6R A;  4L8K A;  1THN B;  3GVL A;  5EZB A;  3ZXN A;  3K50 A;  3IF5 A;  1V0F A;  2ZOA A;  3IH9 A;  1FCF A;  1WXW A;  5EUZ A;  4AE2 A;  2DXL A;  4XS5 A;  3MGL A;  1V0E A;  3D3U A;  3IHB A;  3DUP A;  1HF2 A;  3EH7 A;  1SBO A;  2DXN A;  3GVJ A;  3ZTB A;  1AUZ A;  3IH8 A;  2KLN A;  4L1C A;  1H4Y A;  2B78 A;  3AGE A;  1FC7 A;  1J7X A;  5EUU A;  3F43 A;  2VY9 A;  4HIZ A;  4AEJ A;  2AS0 A;  3LLO A;  4JC0 A;  3V97 A;  3DJA A;  1BUZ A;  1N6E A;  3T6O A;  2CWW A;  1FC6 A;  5EUW A;  4DGH A;  3QDQ A;  3JU4 A;  1H4Z A;  3GK7 A;  3GHF A;  1VC1 A;  3MOG A;  3AGD A;  3DOR A;  3D03 A;  4GHN A;  2KA5 A;  3C0K A;  4QTP A;  4DMG A;  1H4X A;  3NY7 A;  4HYL A;  1WXX A;  3V8V A;  2RRL A;  1TH8 B;  1N6D A;  5EUX A;  1TIL B;  3OIR A;  3OIZ A;  1TID B;  1FC9 A;  3GVK A;  1BPL A;  2ZO9 B;  3LKL A;  4DGF A; 
#chains in the Genus database with same CATH homology
 3LLO A;  3NY7 A;  4HYL A;  5EUZ A;  1BUZ A;  4XS5 A;  3MGL A;  3IHB A;  1TH8 B;  5EUX A;  1TIL B;  3T6O A;  1SBO A;  5EUS A;  3ZTB A;  3IHA A;  5EUW A;  4DGH A;  1AUZ A;  1T6R A;  3IH8 A;  1H4Z A;  2KLN A;  3OIR A;  3OIZ A;  1THN B;  1TID B;  5EZB A;  1H4Y A;  3ZXN A;  1VC1 A;  3IF5 A;  3AGE A;  3AGD A;  3LKL A;  2KA5 A;  4QTP A;  5EUU A;  1H4X A;  3F43 A;  2VY9 A;  3IH9 A;  4DGF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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