1TJTA

X-ray structure of the human alpha-actinin isoform 3 at 2.2a resolution
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
224
structure length
224
Chain Sequence
AWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Contractile protein
molecule keywords Alpha-actinin 3
publication title The crystal structure of the actin binding domain from alpha-actinin in its closed conformation: structural insight into phospholipid regulation of alpha-actinin
pubmed doi rcsb
source organism Homo sapiens
total genus 82
structure length 224
sequence length 224
ec nomenclature
pdb deposition date 2004-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1tjtA02
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1tjtA01
2JV9A 2R8UA 3FERA 2D87A 2VZDA 2EE7A 1SH5A 1RT8A 3HOPA 2K2RA 2WFNA 2WA6A 1UJOA 1WYLA 2WA7A 1QAGA 3JALM 4Q58A 1TJTA 1UEGA 1WIXA 5A38A 2QJXA 1V5KA 4EDNA 5A36A 2D88A 4Q59A 2EYIA 1BHDA 1WYNA 1P2XA 5A4BA 1MB8A 3KMUB 4TXKA 1WJOA 1WYPA 1VKAA 2DK9A 3KMWB 2L3GA 2E9KA 2D85A 2R0OA 2QJZA 2RR8A 3I6XA 3JAKM 1PA7A 1AA2A 4Q57B 3KY9A 2YRNA 5A37A 4EDMA 4B7LA 5BVRA 3REPB 1WYOA 1BKRA 1WYMA 2D89A 1SH6A 1WYQA 2VZCA 3F7PA 1DXXA 1AOAA 3HOCA 2D86A 1WKUA 3HORA 1PXYA 4EDLA 5L0OA 2EYNA 5J8EA 2VZIB 2WA5A 3CO1A 2K3SA 1H67A 2VZGB 3JARM 1P5SA 1WYRA 4TXIA
chains in the Genus database with same CATH superfamily
2JV9A 2R8UA 3EAYA 3FERA 2EQOA 2D87A 5FMTA 2VZDA 2EE7A 1SH5A 1RT8A 1EUVA 3HOPA 4LVRA 2K2RA 2WFNA 2WA6A 1UJOA 1WYLA 2WA7A 1QAGA 4DDPA 2HKPA 3JALM 4Q58A 1TJTA 1UEGA 2VE7A 2IGPA 1WIXA 5A38A 2QJXA 1V5KA 4EDNA 5A36A 2D88A 5FMUA 4Q59A 2EYIA 2HL9A 3VP7A 1BHDA 1WYNA 1P2XA 5A4BA 1MB8A 3KMUB 4TXKA 1WJOA 1WYPA 2WE6A 1VKAA 2DK9A 3KMWB 2L3GA 2E9KA 2D85A 2R0OA 2QJZA 2RR8A 3I6XA 3JAKM 2HL8A 4LVPA 1PA7A 1AA2A 2WDTA 4Q57B 3KY9A 2YRNA 5A37A 2VE7C 4EDMA 4B7LA 5BVRA 3REPB 1WYOA 1BKRA 1WYMA 2D89A 1SH6A 1WYQA 2VZCA 3F7PA 1DXXA 1AOAA 3HOCA 2D86A 1WKUA 3HORA 1PXYA 4EDLA 5L0OA 2EYNA 5J8EA 2VZIB 2WA5A 3CO1A 2K3SA 1H67A 2VZGB 3JARM 1P5SA 1WYRA 4TXIA
chains in the Genus database with same CATH topology
2JV9A 2R8UA 3FERA 2D87A 2VZDA 2EE7A 1SH5A 1RT8A 3HOPA 2K2RA 2WFNA 2WA6A 1UJOA 1WYLA 2WA7A 1QAGA 3JALM 4Q58A 1TJTA 1UEGA 1WIXA 5A38A 2QJXA 1V5KA 4EDNA 5A36A 2D88A 4Q59A 2EYIA 1BHDA 1WYNA 1P2XA 5A4BA 1MB8A 3KMUB 4TXKA 1WJOA 1WYPA 1VKAA 2DK9A 3KMWB 2L3GA 2E9KA 2D85A 2R0OA 2QJZA 2RR8A 3I6XA 3JAKM 1PA7A 1AA2A 4Q57B 3KY9A 2YRNA 5A37A 4EDMA 4B7LA 5BVRA 3REPB 1WYOA 1BKRA 1WYMA 2D89A 1SH6A 1WYQA 2VZCA 3F7PA 1DXXA 1AOAA 3HOCA 2D86A 1WKUA 3HORA 1PXYA 4EDLA 5L0OA 2EYNA 5J8EA 2VZIB 2WA5A 3CO1A 2K3SA 1H67A 2VZGB 3JARM 1P5SA 1WYRA 4TXIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JV9 A;  2R8U A;  3FER A;  2D87 A;  2VZD A;  2EE7 A;  1SH5 A;  1RT8 A;  3HOP A;  2K2R A;  2WFN A;  2WA6 A;  1UJO A;  1WYL A;  2WA7 A;  1QAG A;  3JAL M;  4Q58 A;  1TJT A;  1UEG A;  1WIX A;  5A38 A;  2QJX A;  1V5K A;  4EDN A;  5A36 A;  2D88 A;  4Q59 A;  2EYI A;  1BHD A;  1WYN A;  1P2X A;  5A4B A;  1MB8 A;  3KMU B;  4TXK A;  1WJO A;  1WYP A;  1VKA A;  2DK9 A;  3KMW B;  2L3G A;  2E9K A;  2D85 A;  2R0O A;  2QJZ A;  2RR8 A;  3I6X A;  3JAK M;  1PA7 A;  1AA2 A;  4Q57 B;  3KY9 A;  2YRN A;  5A37 A;  4EDM A;  4B7L A;  5BVR A;  3REP B;  1WYO A;  1BKR A;  1WYM A;  2D89 A;  1SH6 A;  1WYQ A;  2VZC A;  3F7P A;  1DXX A;  1AOA A;  3HOC A;  2D86 A;  1WKU A;  3HOR A;  1PXY A;  4EDL A;  5L0O A;  2EYN A;  5J8E A;  2VZI B;  2WA5 A;  3CO1 A;  2K3S A;  1H67 A;  2VZG B;  3JAR M;  1P5S A;  1WYR A;  4TXI A; 
#chains in the Genus database with same CATH topology
 2JV9 A;  2R8U A;  3EAY A;  3FER A;  2EQO A;  2D87 A;  5FMT A;  2VZD A;  2EE7 A;  1SH5 A;  1RT8 A;  1EUV A;  3HOP A;  4LVR A;  2K2R A;  2WFN A;  2WA6 A;  1UJO A;  1WYL A;  2WA7 A;  1QAG A;  4DDP A;  2HKP A;  3JAL M;  4Q58 A;  1TJT A;  1UEG A;  2VE7 A;  2IGP A;  1WIX A;  5A38 A;  2QJX A;  1V5K A;  4EDN A;  5A36 A;  2D88 A;  5FMU A;  4Q59 A;  2EYI A;  2HL9 A;  3VP7 A;  1BHD A;  1WYN A;  1P2X A;  5A4B A;  1MB8 A;  3KMU B;  4TXK A;  1WJO A;  1WYP A;  2WE6 A;  1VKA A;  2DK9 A;  3KMW B;  2L3G A;  2E9K A;  2D85 A;  2R0O A;  2QJZ A;  2RR8 A;  3I6X A;  3JAK M;  2HL8 A;  4LVP A;  1PA7 A;  1AA2 A;  2WDT A;  4Q57 B;  3KY9 A;  2YRN A;  5A37 A;  2VE7 C;  4EDM A;  4B7L A;  5BVR A;  3REP B;  1WYO A;  1BKR A;  1WYM A;  2D89 A;  1SH6 A;  1WYQ A;  2VZC A;  3F7P A;  1DXX A;  1AOA A;  3HOC A;  2D86 A;  1WKU A;  3HOR A;  1PXY A;  4EDL A;  5L0O A;  2EYN A;  5J8E A;  2VZI B;  2WA5 A;  3CO1 A;  2K3S A;  1H67 A;  2VZG B;  3JAR M;  1P5S A;  1WYR A;  4TXI A; 
#chains in the Genus database with same CATH homology
 2JV9 A;  2R8U A;  3FER A;  2D87 A;  2VZD A;  2EE7 A;  1SH5 A;  1RT8 A;  3HOP A;  2K2R A;  2WFN A;  2WA6 A;  1UJO A;  1WYL A;  2WA7 A;  1QAG A;  3JAL M;  4Q58 A;  1TJT A;  1UEG A;  1WIX A;  5A38 A;  2QJX A;  1V5K A;  4EDN A;  5A36 A;  2D88 A;  4Q59 A;  2EYI A;  1BHD A;  1WYN A;  1P2X A;  5A4B A;  1MB8 A;  3KMU B;  4TXK A;  1WJO A;  1WYP A;  1VKA A;  2DK9 A;  3KMW B;  2L3G A;  2E9K A;  2D85 A;  2R0O A;  2QJZ A;  2RR8 A;  3I6X A;  3JAK M;  1PA7 A;  1AA2 A;  4Q57 B;  3KY9 A;  2YRN A;  5A37 A;  4EDM A;  4B7L A;  5BVR A;  3REP B;  1WYO A;  1BKR A;  1WYM A;  2D89 A;  1SH6 A;  1WYQ A;  2VZC A;  3F7P A;  1DXX A;  1AOA A;  3HOC A;  2D86 A;  1WKU A;  3HOR A;  1PXY A;  4EDL A;  5L0O A;  2EYN A;  5J8E A;  2VZI B;  2WA5 A;  3CO1 A;  2K3S A;  1H67 A;  2VZG B;  3JAR M;  1P5S A;  1WYR A;  4TXI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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