1TM0A

Crystal structure of the putative proline racemase from brucella melitensis, northeast structural genomics target lr31
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
332
structure length
311
Chain Sequence
MRSTKVIHIVGCHAEGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHVNLLVPPKDPRAQMGFIIMEPADTPPMSGSNSICVSTVLLDSGIIAMQEPVTHMVLEAPGGIIEVEAECRNGKAERISVRNVPSFADRLDAPLDVTGLGTIMVDTAYGGDSFVIVDAAQIGEPGQARELAEIGVKITKAFRHPERDWRHISFCQITEPVTREGDVLTGVNTVPTGTGCSARMAVLHAKGQMKAGERFIGKSVTEFHCRLDKVLELGGKPAISPIISGRAWVTGTSQLMLDPSDPFPHGY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROLINE RACEMASE
publication title Functional insights from structural genomics.
pubmed doi rcsb
source organism Brucella melitensis
molecule tags Isomerase
total genus 62
structure length 311
sequence length 332
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2004-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1tm0A02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1tm0A01
1U1VA 1YM5A 5H2YA 1XUAA 2GKEA 2PVZA 1U1XA 4JBDA 2Q9HA 1XUBA 1QY9A 4K8LA 4IK0A 1W61A 3EKMA 1TM0A 2AZPA 2PW0A 1S7JA 3EJXA 2OTNA 4LB0A 5H2GA 4J9WA 4JCIA 4K7GB 1U0KA 1SDJA 4Q2HA 4J9XA 1QYAA 5HA4A 4Q60A 3EDNA 1U1WA 4JD7A 5M47A 2GKJA 4DUNA 5IWEA 1T6KA 3FVEA 4IJZA 1W62A 4K7XA 2H9FA 4JUUA 3G7KA 1GQZA 2Q9JA 1BWZA
chains in the Genus database with same CATH superfamily
1U1VA 3PW9A 1U1XA 2MPBA 2Q9HA 1QY9A 2QB7A 4RPAA 1W61A 3EKMA 1TM0A 2AZPA 2ZXRA 4LB0A 4OA3A 4LG3A 2ZXPA 1U0KA 1SDJA 3W5WA 2GKJA 1IR6A 1W62A 2EB0A 1K23A 4JUUA 2Q9JA 1BWZA 3ICJA 5H2YA 2PVZA 4IK0A 2PW0A 3EJXA 2OTNA 4JCIA 5HA4A 3IGHX 2KPTA 4Q60A 5ANPA 3WQZA 1T6KA 3FVEA 4IJZA 4K7XA 2H9FA 1I74A 2ENXA 3PVHA 3DEVA 1K20A 1YM5A 1XUAA 2GKEA 1XUBA 2QB8A 2QB6A 4J9WA 4K7GB 4Q2HA 4J9XA 1QYAA 3EDNA 4JD7A 5M47A 4DUNA 3PTJA 2KW7A 4LS9A 2ZXOA 3G98A 3G7KA 1WPMA 2HAWA 4JBDA 1S7JA 2LT2A 5H2GA 2YMAA 2IW4A 1U1WA 2ZVFA 5IWEA 1WPPA 4GL6A 4PY9A 1GQZA 4K8LA
chains in the Genus database with same CATH topology
1U1VA 3PW9A 1U1XA 2MPBA 2Q9HA 1QY9A 2QB7A 4RPAA 1W61A 3EKMA 1TM0A 2AZPA 2ZXRA 4LB0A 4OA3A 4LG3A 2ZXPA 1U0KA 1SDJA 3W5WA 2GKJA 1IR6A 1W62A 2EB0A 1K23A 4JUUA 2Q9JA 1BWZA 3ICJA 5H2YA 2PVZA 4IK0A 2PW0A 3EJXA 2OTNA 4JCIA 5HA4A 3IGHX 2KPTA 4Q60A 5ANPA 3WQZA 1T6KA 3FVEA 4IJZA 4K7XA 2H9FA 1I74A 2ENXA 3PVHA 3DEVA 1K20A 1YM5A 1XUAA 2GKEA 1XUBA 2QB8A 2QB6A 4J9WA 4K7GB 4Q2HA 4J9XA 1QYAA 3EDNA 4JD7A 5M47A 4DUNA 3PTJA 2KW7A 4LS9A 2ZXOA 3G98A 3G7KA 1WPMA 2HAWA 4JBDA 1S7JA 2LT2A 5H2GA 2YMAA 2IW4A 1U1WA 2ZVFA 5IWEA 1WPPA 4GL6A 4PY9A 1GQZA 4K8LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U1V A;  1YM5 A;  5H2Y A;  1XUA A;  2GKE A;  2PVZ A;  1U1X A;  4JBD A;  2Q9H A;  1XUB A;  1QY9 A;  4K8L A;  4IK0 A;  1W61 A;  3EKM A;  1TM0 A;  2AZP A;  2PW0 A;  1S7J A;  3EJX A;  2OTN A;  4LB0 A;  5H2G A;  4J9W A;  4JCI A;  4K7G B;  1U0K A;  1SDJ A;  4Q2H A;  4J9X A;  1QYA A;  5HA4 A;  4Q60 A;  3EDN A;  1U1W A;  4JD7 A;  5M47 A;  2GKJ A;  4DUN A;  5IWE A;  1T6K A;  3FVE A;  4IJZ A;  1W62 A;  4K7X A;  2H9F A;  4JUU A;  3G7K A;  1GQZ A;  2Q9J A;  1BWZ A; 
#chains in the Genus database with same CATH topology
 1U1V A;  3PW9 A;  1U1X A;  2MPB A;  2Q9H A;  1QY9 A;  2QB7 A;  4RPA A;  1W61 A;  3EKM A;  1TM0 A;  2AZP A;  2ZXR A;  4LB0 A;  4OA3 A;  4LG3 A;  2ZXP A;  1U0K A;  1SDJ A;  3W5W A;  2GKJ A;  1IR6 A;  1W62 A;  2EB0 A;  1K23 A;  4JUU A;  2Q9J A;  1BWZ A;  3ICJ A;  5H2Y A;  2PVZ A;  4IK0 A;  2PW0 A;  3EJX A;  2OTN A;  4JCI A;  5HA4 A;  3IGH X;  2KPT A;  4Q60 A;  5ANP A;  3WQZ A;  1T6K A;  3FVE A;  4IJZ A;  4K7X A;  2H9F A;  1I74 A;  2ENX A;  3PVH A;  3DEV A;  1K20 A;  1YM5 A;  1XUA A;  2GKE A;  1XUB A;  2QB8 A;  2QB6 A;  4J9W A;  4K7G B;  4Q2H A;  4J9X A;  1QYA A;  3EDN A;  4JD7 A;  5M47 A;  4DUN A;  3PTJ A;  2KW7 A;  4LS9 A;  2ZXO A;  3G98 A;  3G7K A;  1WPM A;  2HAW A;  4JBD A;  1S7J A;  2LT2 A;  5H2G A;  2YMA A;  2IW4 A;  1U1W A;  2ZVF A;  5IWE A;  1WPP A;  4GL6 A;  4PY9 A;  1GQZ A;  4K8L A; 
#chains in the Genus database with same CATH homology
 1U1V A;  3PW9 A;  1U1X A;  2MPB A;  2Q9H A;  1QY9 A;  2QB7 A;  4RPA A;  1W61 A;  3EKM A;  1TM0 A;  2AZP A;  2ZXR A;  4LB0 A;  4OA3 A;  4LG3 A;  2ZXP A;  1U0K A;  1SDJ A;  3W5W A;  2GKJ A;  1IR6 A;  1W62 A;  2EB0 A;  1K23 A;  4JUU A;  2Q9J A;  1BWZ A;  3ICJ A;  5H2Y A;  2PVZ A;  4IK0 A;  2PW0 A;  3EJX A;  2OTN A;  4JCI A;  5HA4 A;  3IGH X;  2KPT A;  4Q60 A;  5ANP A;  3WQZ A;  1T6K A;  3FVE A;  4IJZ A;  4K7X A;  2H9F A;  1I74 A;  2ENX A;  3PVH A;  3DEV A;  1K20 A;  1YM5 A;  1XUA A;  2GKE A;  1XUB A;  2QB8 A;  2QB6 A;  4J9W A;  4K7G B;  4Q2H A;  4J9X A;  1QYA A;  3EDN A;  4JD7 A;  5M47 A;  4DUN A;  3PTJ A;  2KW7 A;  4LS9 A;  2ZXO A;  3G98 A;  3G7K A;  1WPM A;  2HAW A;  4JBD A;  1S7J A;  2LT2 A;  5H2G A;  2YMA A;  2IW4 A;  1U1W A;  2ZVF A;  5IWE A;  1WPP A;  4GL6 A;  4PY9 A;  1GQZ A;  4K8L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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