1TM0A

Crystal structure of the putative proline racemase from brucella melitensis, northeast structural genomics target lr31
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
332
structure length
311
Chain Sequence
MRSTKVIHIVGCHAEGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHVNLLVPPKDPRAQMGFIIMEPADTPPMSGSNSICVSTVLLDSGIIAMQEPVTHMVLEAPGGIIEVEAECRNGKAERISVRNVPSFADRLDAPLDVTGLGTIMVDTAYGGDSFVIVDAAQIGEPGQARELAEIGVKITKAFRHPERDWRHISFCQITEPVTREGDVLTGVNTVPTGTGCSARMAVLHAKGQMKAGERFIGKSVTEFHCRLDKVLELGGKPAISPIISGRAWVTGTSQLMLDPSDPFPHGY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Functional insights from structural genomics.
pubmed doi rcsb
source organism Brucella melitensis
molecule tags Isomerase
molecule keywords PROLINE RACEMASE
total genus 62
structure length 311
sequence length 332
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2004-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1tm0A02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1tm0A01
1W62A 4J9WA 4JCIA 2H9FA 1GQZA 2GKJA 4IJZA 1XUBA 4Q60A 4K7GB 5H2GA 1XUAA 3G7KA 1SDJA 3EKMA 2OTNA 1U1WA 1YM5A 4K7XA 4J9XA 5H2YA 2GKEA 1U1XA 3FVEA 4JBDA 4JUUA 4K8LA 5M47A 2PW0A 1U1VA 1W61A 1S7JA 2PVZA 5IWEA 2AZPA 1BWZA 3EDNA 4JD7A 5HA4A 4Q2HA 4IK0A 1TM0A 1U0KA 2Q9HA 2Q9JA 1QYAA 1QY9A 1T6KA 4LB0A 4DUNA 3EJXA
chains in the Genus database with same CATH superfamily
1IR6A 1W62A 2ZXOA 4IJZA 4Q60A 1SDJA 2YMAA 4RPAA 5H2YA 5M47A 2KPTA 4PY9A 1TM0A 3PW9A 4DUNA 4J9WA 4JCIA 2H9FA 1WPMA 1XUBA 4K7GB 3G7KA 3PVHA 2ZXPA 4GL6A 4LS9A 1U1WA 1YM5A 1U1VA 3G98A 2ENXA 2AZPA 1BWZA 3EDNA 4IK0A 3IGHX 2MPBA 2Q9JA 1QYAA 1T6KA 2KW7A 3W5WA 2GKJA 4LG3A 1XUAA 2QB6A 2HAWA 2OTNA 2LT2A 2ZVFA 2GKEA 2EB0A 2PW0A 3ICJA 2PVZA 5IWEA 1U0KA 2QB8A 4LB0A 1I74A 1GQZA 1K20A 5H2GA 2IW4A 2QB7A 3EKMA 1K23A 4OA3A 4K7XA 4J9XA 1U1XA 3FVEA 4JBDA 4JUUA 5ANPA 4K8LA 1WPPA 3PTJA 1W61A 1S7JA 4JD7A 5HA4A 4Q2HA 3WQZA 2Q9HA 1QY9A 2ZXRA 3DEVA 3EJXA
chains in the Genus database with same CATH topology
1IR6A 1W62A 2ZXOA 4IJZA 4Q60A 1SDJA 2YMAA 4RPAA 5H2YA 5M47A 2KPTA 4PY9A 1TM0A 3PW9A 4DUNA 4J9WA 4JCIA 2H9FA 1WPMA 1XUBA 4K7GB 3G7KA 3PVHA 2ZXPA 4GL6A 4LS9A 1U1WA 1YM5A 1U1VA 3G98A 2ENXA 2AZPA 1BWZA 3EDNA 4IK0A 3IGHX 2MPBA 2Q9JA 1QYAA 1T6KA 2KW7A 3W5WA 2GKJA 4LG3A 1XUAA 2QB6A 2HAWA 2OTNA 2LT2A 2ZVFA 2GKEA 2EB0A 2PW0A 3ICJA 2PVZA 5IWEA 1U0KA 2QB8A 4LB0A 1I74A 1GQZA 1K20A 5H2GA 2IW4A 2QB7A 3EKMA 1K23A 4OA3A 4K7XA 4J9XA 1U1XA 3FVEA 4JBDA 4JUUA 5ANPA 4K8LA 1WPPA 3PTJA 1W61A 1S7JA 4JD7A 5HA4A 4Q2HA 3WQZA 2Q9HA 1QY9A 2ZXRA 3DEVA 3EJXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W62 A;  4J9W A;  4JCI A;  2H9F A;  1GQZ A;  2GKJ A;  4IJZ A;  1XUB A;  4Q60 A;  4K7G B;  5H2G A;  1XUA A;  3G7K A;  1SDJ A;  3EKM A;  2OTN A;  1U1W A;  1YM5 A;  4K7X A;  4J9X A;  5H2Y A;  2GKE A;  1U1X A;  3FVE A;  4JBD A;  4JUU A;  4K8L A;  5M47 A;  2PW0 A;  1U1V A;  1W61 A;  1S7J A;  2PVZ A;  5IWE A;  2AZP A;  1BWZ A;  3EDN A;  4JD7 A;  5HA4 A;  4Q2H A;  4IK0 A;  1TM0 A;  1U0K A;  2Q9H A;  2Q9J A;  1QYA A;  1QY9 A;  1T6K A;  4LB0 A;  4DUN A;  3EJX A; 
#chains in the Genus database with same CATH topology
 1IR6 A;  1W62 A;  2ZXO A;  4IJZ A;  4Q60 A;  1SDJ A;  2YMA A;  4RPA A;  5H2Y A;  5M47 A;  2KPT A;  4PY9 A;  1TM0 A;  3PW9 A;  4DUN A;  4J9W A;  4JCI A;  2H9F A;  1WPM A;  1XUB A;  4K7G B;  3G7K A;  3PVH A;  2ZXP A;  4GL6 A;  4LS9 A;  1U1W A;  1YM5 A;  1U1V A;  3G98 A;  2ENX A;  2AZP A;  1BWZ A;  3EDN A;  4IK0 A;  3IGH X;  2MPB A;  2Q9J A;  1QYA A;  1T6K A;  2KW7 A;  3W5W A;  2GKJ A;  4LG3 A;  1XUA A;  2QB6 A;  2HAW A;  2OTN A;  2LT2 A;  2ZVF A;  2GKE A;  2EB0 A;  2PW0 A;  3ICJ A;  2PVZ A;  5IWE A;  1U0K A;  2QB8 A;  4LB0 A;  1I74 A;  1GQZ A;  1K20 A;  5H2G A;  2IW4 A;  2QB7 A;  3EKM A;  1K23 A;  4OA3 A;  4K7X A;  4J9X A;  1U1X A;  3FVE A;  4JBD A;  4JUU A;  5ANP A;  4K8L A;  1WPP A;  3PTJ A;  1W61 A;  1S7J A;  4JD7 A;  5HA4 A;  4Q2H A;  3WQZ A;  2Q9H A;  1QY9 A;  2ZXR A;  3DEV A;  3EJX A; 
#chains in the Genus database with same CATH homology
 1IR6 A;  1W62 A;  2ZXO A;  4IJZ A;  4Q60 A;  1SDJ A;  2YMA A;  4RPA A;  5H2Y A;  5M47 A;  2KPT A;  4PY9 A;  1TM0 A;  3PW9 A;  4DUN A;  4J9W A;  4JCI A;  2H9F A;  1WPM A;  1XUB A;  4K7G B;  3G7K A;  3PVH A;  2ZXP A;  4GL6 A;  4LS9 A;  1U1W A;  1YM5 A;  1U1V A;  3G98 A;  2ENX A;  2AZP A;  1BWZ A;  3EDN A;  4IK0 A;  3IGH X;  2MPB A;  2Q9J A;  1QYA A;  1T6K A;  2KW7 A;  3W5W A;  2GKJ A;  4LG3 A;  1XUA A;  2QB6 A;  2HAW A;  2OTN A;  2LT2 A;  2ZVF A;  2GKE A;  2EB0 A;  2PW0 A;  3ICJ A;  2PVZ A;  5IWE A;  1U0K A;  2QB8 A;  4LB0 A;  1I74 A;  1GQZ A;  1K20 A;  5H2G A;  2IW4 A;  2QB7 A;  3EKM A;  1K23 A;  4OA3 A;  4K7X A;  4J9X A;  1U1X A;  3FVE A;  4JBD A;  4JUU A;  5ANP A;  4K8L A;  1WPP A;  3PTJ A;  1W61 A;  1S7J A;  4JD7 A;  5HA4 A;  4Q2H A;  3WQZ A;  2Q9H A;  1QY9 A;  2ZXR A;  3DEV A;  3EJX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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