1TMGI

Crystal structure of the complex of subtilisin bpn' with chymotrypsin inhibitor 2 m59f mutant
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
64
structure length
64
Chain Sequence
MKTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTFEYRIDRVRLFVDRLDNIAQVPRVG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Subtilisin BPN'
publication title Binding, Proteolytic, and Crystallographic Analyses of Mutations at the Protease-Inhibitor Interface of the Subtilisin BPN'/Chymotrypsin Inhibitor 2 Complex(,).
pubmed doi rcsb
source organism Bacillus amyloliquefaciens
total genus 19
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2004-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00280 potato_inhibit Potato inhibitor I family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.10.10 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V, subunit A 1tmgI00
1Y3BI 1TM3I 1MEEI 1Y48I 2TECI 1Y33I 1TM1I 1COAI 1CSEI 1TM4I 1Y3DI 1YPBI 3RDZC 3W0EA 2SNII 3W0DA 1EGLA 1Y3CI 4B2AB 1TM5I 5FBZB 1VBWA 4B2BB 1SIBI 5FFNI 1Y3FI 1TMGI 3RDYA 1ACBI 1Y1KI 1CISA 1MITA 1HYMA 1TINA 4H4FB 1LW6I 1DWMA 1TO1I 1Y4AI 1Y34I 1YPAI 1TECI 1TM7I 1YPCI 1SBNI 2SECI 2CI2I 4B1TB 1Y4DI 1TO2I 4B2CB 3CI2A 3TECI
chains in the Genus database with same CATH superfamily
1Y3BI 3OUVA 1TM3I 2MGVA 1MEEI 1Y48I 2TECI 1Y33I 1TM1I 1COAI 1CSEI 1TM4I 1Y3DI 1YPBI 5E10A 3RDZC 3W0EA 2KUEA 2KUIA 5E0ZA 2SNII 5E0YA 3W0DA 1EGLA 1Y3CI 4B2AB 1TM5I 5FBZB 1VBWA 4B2BB 1SIBI 3M9GA 5FFNI 1Y3FI 1TMGI 3RDYA 1ACBI 3PY9A 1Y1KI 1CISA 1MITA 1HYMA 1TINA 4H4FB 1LW6I 1DWMA 1TO1I 1Y4AI 1Y34I 1YPAI 1TECI 1TM7I 1YPCI 1SBNI 2SECI 2KUDA 2CI2I 4B1TB 1Y4DI 2KUFA 1TO2I 4B2CB 3CI2A 3TECI
chains in the Genus database with same CATH topology
1Y3BI 1TM3I 1MEEI 1Y48I 2TECI 1Y33I 1TM1I 1COAI 1CSEI 1TM4I 1Y3DI 1YPBI 3RDZC 3W0EA 2SNII 3W0DA 1EGLA 1Y3CI 4B2AB 1TM5I 5FBZB 1VBWA 4B2BB 1SIBI 5FFNI 1Y3FI 1TMGI 3RDYA 1ACBI 1Y1KI 1CISA 1MITA 1HYMA 1TINA 4H4FB 1LW6I 1DWMA 1TO1I 1Y4AI 1Y34I 1YPAI 1TECI 1TM7I 1YPCI 1SBNI 2SECI 2CI2I 4B1TB 1Y4DI 1TO2I 4B2CB 3CI2A 3TECI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y3B I;  1TM3 I;  1MEE I;  1Y48 I;  2TEC I;  1Y33 I;  1TM1 I;  1COA I;  1CSE I;  1TM4 I;  1Y3D I;  1YPB I;  3RDZ C;  3W0E A;  2SNI I;  3W0D A;  1EGL A;  1Y3C I;  4B2A B;  1TM5 I;  5FBZ B;  1VBW A;  4B2B B;  1SIB I;  5FFN I;  1Y3F I;  1TMG I;  3RDY A;  1ACB I;  1Y1K I;  1CIS A;  1MIT A;  1HYM A;  1TIN A;  4H4F B;  1LW6 I;  1DWM A;  1TO1 I;  1Y4A I;  1Y34 I;  1YPA I;  1TEC I;  1TM7 I;  1YPC I;  1SBN I;  2SEC I;  2CI2 I;  4B1T B;  1Y4D I;  1TO2 I;  4B2C B;  3CI2 A;  3TEC I; 
#chains in the Genus database with same CATH topology
 1Y3B I;  3OUV A;  1TM3 I;  2MGV A;  1MEE I;  1Y48 I;  2TEC I;  1Y33 I;  1TM1 I;  1COA I;  1CSE I;  1TM4 I;  1Y3D I;  1YPB I;  5E10 A;  3RDZ C;  3W0E A;  2KUE A;  2KUI A;  5E0Z A;  2SNI I;  5E0Y A;  3W0D A;  1EGL A;  1Y3C I;  4B2A B;  1TM5 I;  5FBZ B;  1VBW A;  4B2B B;  1SIB I;  3M9G A;  5FFN I;  1Y3F I;  1TMG I;  3RDY A;  1ACB I;  3PY9 A;  1Y1K I;  1CIS A;  1MIT A;  1HYM A;  1TIN A;  4H4F B;  1LW6 I;  1DWM A;  1TO1 I;  1Y4A I;  1Y34 I;  1YPA I;  1TEC I;  1TM7 I;  1YPC I;  1SBN I;  2SEC I;  2KUD A;  2CI2 I;  4B1T B;  1Y4D I;  2KUF A;  1TO2 I;  4B2C B;  3CI2 A;  3TEC I; 
#chains in the Genus database with same CATH homology
 1Y3B I;  1TM3 I;  1MEE I;  1Y48 I;  2TEC I;  1Y33 I;  1TM1 I;  1COA I;  1CSE I;  1TM4 I;  1Y3D I;  1YPB I;  3RDZ C;  3W0E A;  2SNI I;  3W0D A;  1EGL A;  1Y3C I;  4B2A B;  1TM5 I;  5FBZ B;  1VBW A;  4B2B B;  1SIB I;  5FFN I;  1Y3F I;  1TMG I;  3RDY A;  1ACB I;  1Y1K I;  1CIS A;  1MIT A;  1HYM A;  1TIN A;  4H4F B;  1LW6 I;  1DWM A;  1TO1 I;  1Y4A I;  1Y34 I;  1YPA I;  1TEC I;  1TM7 I;  1YPC I;  1SBN I;  2SEC I;  2CI2 I;  4B1T B;  1Y4D I;  1TO2 I;  4B2C B;  3CI2 A;  3TEC I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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