1TMIA

Structure of thermotoga maritima s63a non-processing mutant s-adenosylmethionine decarboxylase
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
117
structure length
117
Chain Sequence
KSLGRHLVAEFYECDREVLDNVQLIEQEMKQAAYESGATIVTSTFHRFLPYGVSGVVVISEAHLTIHTWPEYGYAAIDLFTCGEDVDPWKAFEHLKKALKAKRVHVVEHERGRYDEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords S-adenosylmethionine decarboxylase proenzyme, AdoMetDC, SamD
publication title Evolutionary Links as Revealed by the Structure of Thermotoga maritima S-Adenosylmethionine Decarboxylase.
pubmed doi rcsb
source organism Thermotoga maritima
total genus 37
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.50: Adenosylmethionine decarboxylase.
pdb deposition date 2004-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02675 AdoMet_dc S-adenosylmethionine decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.90.10 Alpha Beta 4-Layer Sandwich S-adenosylmethionine decarboxylase S-adenosylmethionine decarboxylase 1tmiA00
1I72A 3H0WA 3EPAA 1TLUA 1TMIA 5TVOA 3DZ7A 3EP3A 1JENA 1MSVA 3EP9A 1I7CA 1MHMA 1I7MA 3EP8A 3H0VA 2IIIA 1I7BA 3DZ4A 1JL0A 1I79A 3DZ2A 3DZ6A 3EP4A 3DZ3A 1VR7A 3EP6A 3EP5A 3EPBA 3DZ5A 3EP7A
chains in the Genus database with same CATH superfamily
1I72A 3H0WA 3EPAA 1TLUA 1TMIA 5TVOA 3DZ7A 3EP3A 1JENA 1MSVA 3EP9A 1I7CA 1MHMA 1I7MA 3EP8A 3H0VA 2IIIA 1I7BA 3DZ4A 1JL0A 1I79A 3DZ2A 3DZ6A 3EP4A 3DZ3A 1VR7A 3EP6A 3EP5A 3EPBA 3DZ5A 3EP7A
chains in the Genus database with same CATH topology
1I72A 3H0WA 3EPAA 1TLUA 1TMIA 5TVOA 3DZ7A 3EP3A 1JENA 1MSVA 1I7BB 3DZ4B 3EP9A 1I79B 3DZ2B 1I7CA 3DZ6B 3EP4B 1MHMA 1I7MA 3EP8A 3H0VA 3DZ3B 3EP6B 2IIIA 3EP5B 1I7BA 1JL0A 3DZ4A 3EPBB 1I79A 3DZ5B 3DZ2A 3EP7B 3DZ6A 3EP4A 1I72B 3H0WB 3EPAB 3DZ3A 3DZ7B 5TVOB 3EP3B 1JENB 1VR7A 3EP9B 3EP6A 1I7CB 3EP5A 3EPBA 3DZ5A 1I7MB 1MHMB 3EP7A 3EP8B 3H0VB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I72 A;  3H0W A;  3EPA A;  1TLU A;  1TMI A;  5TVO A;  3DZ7 A;  3EP3 A;  1JEN A;  1MSV A;  3EP9 A;  1I7C A;  1MHM A;  1I7M A;  3EP8 A;  3H0V A;  2III A;  1I7B A;  3DZ4 A;  1JL0 A;  1I79 A;  3DZ2 A;  3DZ6 A;  3EP4 A;  3DZ3 A;  1VR7 A;  3EP6 A;  3EP5 A;  3EPB A;  3DZ5 A;  3EP7 A; 
#chains in the Genus database with same CATH topology
 1I72 A;  3H0W A;  3EPA A;  1TLU A;  1TMI A;  5TVO A;  3DZ7 A;  3EP3 A;  1JEN A;  1MSV A;  3EP9 A;  1I7C A;  1MHM A;  1I7M A;  3EP8 A;  3H0V A;  2III A;  1I7B A;  3DZ4 A;  1JL0 A;  1I79 A;  3DZ2 A;  3DZ6 A;  3EP4 A;  3DZ3 A;  1VR7 A;  3EP6 A;  3EP5 A;  3EPB A;  3DZ5 A;  3EP7 A; 
#chains in the Genus database with same CATH homology
 1I72 A;  3H0W A;  3EPA A;  1TLU A;  1TMI A;  5TVO A;  3DZ7 A;  3EP3 A;  1JEN A;  1MSV A;  1I7B B;  3DZ4 B;  3EP9 A;  1I79 B;  3DZ2 B;  1I7C A;  3DZ6 B;  3EP4 B;  1MHM A;  1I7M A;  3EP8 A;  3H0V A;  3DZ3 B;  3EP6 B;  2III A;  3EP5 B;  1I7B A;  1JL0 A;  3DZ4 A;  3EPB B;  1I79 A;  3DZ5 B;  3DZ2 A;  3EP7 B;  3DZ6 A;  3EP4 A;  1I72 B;  3H0W B;  3EPA B;  3DZ3 A;  3DZ7 B;  5TVO B;  3EP3 B;  1JEN B;  1VR7 A;  3EP9 B;  3EP6 A;  1I7C B;  3EP5 A;  3EPB A;  3DZ5 A;  1I7M B;  1MHM B;  3EP7 A;  3EP8 B;  3H0V B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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