1TPMA

Solution structure of the fibrin binding finger domain of tissue-type plasminogen activator determined by 1h nuclear magnetic resonance
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
50
structure length
50
Chain Sequence
SYQVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQCHSVPVKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plasminogen activator
molecule keywords TISSUE-TYPE PLASMINOGEN ACTIVATOR
publication title Solution structure of the fibrin binding finger domain of tissue-type plasminogen activator determined by 1H nuclear magnetic resonance.
pubmed doi rcsb
source organism Homo sapiens
total genus 2
structure length 50
sequence length 50
ec nomenclature ec 3.4.21.68: T-plasminogen activator.
pdb deposition date 1993-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1tpmA00
1UOTP 4AYMA 5FO8C 2LOJA 4WJG2 3T5OA 3OEDC 4F4OC 1OJYA 5JPMG 1GPZA 5HYTB 1E8BA 1PPQA 1TPNA 2B5ID 4LOTA 2YRAA 1OJVA 4AYEA 1MD8A 3NFPI 4AYDA 1CKLA 1LY2A 4A5WB 2XWJI 2JGXA 4CSYA 2JGWA 1HCCA 2RKYA 1FBRA 2G7IA 3EJHA 1VVDA 1U5MA 4C16A 1ELVA 2W80A 3TVJA 3GXEA 3RJ3D 1OK2A 2O39C 1MD7A 2ERJA 3ZRZA 4JHSA 3L89M 2KMSA 3SW0X 4PZ5A 4MUCA 1HFIA 3O8EB 2YBYA 3INBC 2XQWC 2EHFA 1ZJKA 3KZJA 2RLPA 2MCYA 1G4GA 1GKGA 1HFHA 1O9AA 2RKZA 4ZH1D 1OK1A 2RL0A 2A55A 2CG7A 2EC3A 2CG6A 1OK3A 1Z92B 5HYUB 3GOVA 2QY0A 2UWNA 3M7PA 1VVCA 4YNXA 3OXUD 2CKUA 2XRDA 1QUBA 2IZ4A 3OP8A 2WIIC 2V8EA 2IZ3A 3MQLA 1GHQB 2KRIA 1GKNA 1C1ZA 1SS2A 2BZMA 4K12A 1TPGA 1G4FA 1TPMA 1E5GA 5I0QB 1SRZA 2XWBF 4B2RA 2RLQA 1NWVA 4J38B 1Q3XA 4IGDA 3KXVA 4AYIA 4B2SA 4FXGG 1QO6A 3CALA 1E88A 1H03P 3ERBA 2MCZA 5HYPA 1OK9A 2XRBA 3IU3I 4KKDA 4DJZA 2JRAA 1H2PP 5HZPB 4LOSA 3R62A 3ZD1A 1OJWA 1H2QP 3IX0A 4ONTD 3ZD2A 1QGBA 1H04P 2W81A
chains in the Genus database with same CATH superfamily
1UOTP 4AYMA 5FO8C 2LOJA 4WJG2 3T5OA 3F6KA 3OEDC 4F4OC 1OJYA 5JPMG 3WSYA 1GPZA 5HYTB 1E8BA 1PPQA 1TPNA 2B5ID 4LOTA 2YRAA 1OJVA 3ZLEA 4AYEA 1MD8A 3NFPI 4AYDA 1CKLA 1LY2A 4A5WB 2XWJI 2JGXA 5DN4A 4CSYA 2JGWA 1HCCA 2RKYA 1FBRA 3FGRA 4N7EA 2G7IA 3EJHA 1VVDA 1U5MA 3WSXA 4C16A 1ELVA 3NJAA 2W80A 3TVJA 3VWOA 3GXEA 3RJ3D 1OK2A 2O39C 1MD7A 2ERJA 3ZRZA 4JHSA 3L89M 2KMSA 3SW0X 4PZ5A 4MUCA 1HFIA 3O8EB 2Y8TA 2Y8SA 2YBYA 3INBC 3K3TA 4MSLA 2XQWC 2ZYCA 2EHFA 1ZJKA 3KZJA 2RLPA 2X2ZA 2MCYA 1G4GA 1GKGA 1HFHA 1O9AA 2RKZA 4BWCA 4ZH1D 1OK1A 2RL0A 2Y8RA 2A55A 2CG7A 5DN5A 4YIZA 2EC3A 2CG6A 1OK3A 1Z92B 5HYUB 3GOVA 2QY0A 2UWNA 3M7PA 4APLA 1VVCA 4YNXA 3OXUD 2CKUA 2XRDA 1QUBA 2IZ4A 3OP8A 2WIIC 2V8EA 2IZ3A 3MQLA 1GHQB 2KRIA 1GKNA 1C1ZA 1SS2A 2BZMA 4K12A 1TPGA 1G4FA 1TPMA 1E5GA 4PO7A 5I0QB 1SRZA 2XWBF 4B2RA 2RLQA 1NWVA 4J38B 1Q3XA 3CI0J 4IGDA 3KXVA 4AYIA 4B2SA 2I2LA 4FXGG 1QO6A 3CALA 1E88A 1H03P 3ERBA 2MCZA 5HYPA 1OK9A 3ZLDA 2XRBA 3IU3I 4KKDA 4DJZA 2JRAA 1H2PP 5HZPB 4LOSA 3R62A 3ZD1A 1OJWA 1H2QP 3IX0A 4ONTD 3ZD2A 1QGBA 3FGTA 1H04P 2W81A 1RLHA
chains in the Genus database with same CATH topology
1UOTP 4AYMA 5FO8C 2LOJA 4WJG2 3T5OA 3OEDC 4F4OC 1OJYA 5JPMG 1GPZA 5HYTB 1E8BA 1PPQA 1TPNA 2B5ID 4LOTA 2YRAA 1OJVA 4AYEA 1MD8A 3NFPI 4AYDA 1CKLA 1LY2A 4A5WB 2XWJI 2JGXA 4CSYA 2JGWA 1HCCA 2RKYA 1FBRA 2G7IA 3EJHA 1VVDA 1U5MA 4C16A 1ELVA 2W80A 3TVJA 3GXEA 3RJ3D 1OK2A 2O39C 1MD7A 2ERJA 3ZRZA 4JHSA 3L89M 2KMSA 3SW0X 4PZ5A 4MUCA 1HFIA 3O8EB 2YBYA 3INBC 2XQWC 2EHFA 1ZJKA 3KZJA 2RLPA 2MCYA 1G4GA 1GKGA 1HFHA 1O9AA 2RKZA 4ZH1D 1OK1A 2RL0A 2A55A 2CG7A 2EC3A 2CG6A 1OK3A 1Z92B 5HYUB 3GOVA 2QY0A 2UWNA 3M7PA 1VVCA 4YNXA 3OXUD 2CKUA 2XRDA 1QUBA 2IZ4A 3OP8A 2WIIC 2V8EA 2IZ3A 3MQLA 1GHQB 2KRIA 1GKNA 1C1ZA 1SS2A 2BZMA 4K12A 1TPGA 1G4FA 1TPMA 1E5GA 5I0QB 1SRZA 2XWBF 4B2RA 2RLQA 1NWVA 4J38B 1Q3XA 4IGDA 3KXVA 4AYIA 4B2SA 4FXGG 1QO6A 3CALA 1E88A 1H03P 3ERBA 2MCZA 5HYPA 1OK9A 2XRBA 3IU3I 4KKDA 4DJZA 2JRAA 1H2PP 5HZPB 4LOSA 3R62A 3ZD1A 1OJWA 1H2QP 3IX0A 4ONTD 3ZD2A 1QGBA 1H04P 2W81A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UOT P;  4AYM A;  5FO8 C;  2LOJ A;  4WJG 2;  3T5O A;  3OED C;  4F4O C;  1OJY A;  5JPM G;  1GPZ A;  5HYT B;  1E8B A;  1PPQ A;  1TPN A;  2B5I D;  4LOT A;  2YRA A;  1OJV A;  4AYE A;  1MD8 A;  3NFP I;  4AYD A;  1CKL A;  1LY2 A;  4A5W B;  2XWJ I;  2JGX A;  4CSY A;  2JGW A;  1HCC A;  2RKY A;  1FBR A;  2G7I A;  3EJH A;  1VVD A;  1U5M A;  4C16 A;  1ELV A;  2W80 A;  3TVJ A;  3GXE A;  3RJ3 D;  1OK2 A;  2O39 C;  1MD7 A;  2ERJ A;  3ZRZ A;  4JHS A;  3L89 M;  2KMS A;  3SW0 X;  4PZ5 A;  4MUC A;  1HFI A;  3O8E B;  2YBY A;  3INB C;  2XQW C;  2EHF A;  1ZJK A;  3KZJ A;  2RLP A;  2MCY A;  1G4G A;  1GKG A;  1HFH A;  1O9A A;  2RKZ A;  4ZH1 D;  1OK1 A;  2RL0 A;  2A55 A;  2CG7 A;  2EC3 A;  2CG6 A;  1OK3 A;  1Z92 B;  5HYU B;  3GOV A;  2QY0 A;  2UWN A;  3M7P A;  1VVC A;  4YNX A;  3OXU D;  2CKU A;  2XRD A;  1QUB A;  2IZ4 A;  3OP8 A;  2WII C;  2V8E A;  2IZ3 A;  3MQL A;  1GHQ B;  2KRI A;  1GKN A;  1C1Z A;  1SS2 A;  2BZM A;  4K12 A;  1TPG A;  1G4F A;  1TPM A;  1E5G A;  5I0Q B;  1SRZ A;  2XWB F;  4B2R A;  2RLQ A;  1NWV A;  4J38 B;  1Q3X A;  4IGD A;  3KXV A;  4AYI A;  4B2S A;  4FXG G;  1QO6 A;  3CAL A;  1E88 A;  1H03 P;  3ERB A;  2MCZ A;  5HYP A;  1OK9 A;  2XRB A;  3IU3 I;  4KKD A;  4DJZ A;  2JRA A;  1H2P P;  5HZP B;  4LOS A;  3R62 A;  3ZD1 A;  1OJW A;  1H2Q P;  3IX0 A;  4ONT D;  3ZD2 A;  1QGB A;  1H04 P;  2W81 A; 
#chains in the Genus database with same CATH topology
 1UOT P;  4AYM A;  5FO8 C;  2LOJ A;  4WJG 2;  3T5O A;  3F6K A;  3OED C;  4F4O C;  1OJY A;  5JPM G;  3WSY A;  1GPZ A;  5HYT B;  1E8B A;  1PPQ A;  1TPN A;  2B5I D;  4LOT A;  2YRA A;  1OJV A;  3ZLE A;  4AYE A;  1MD8 A;  3NFP I;  4AYD A;  1CKL A;  1LY2 A;  4A5W B;  2XWJ I;  2JGX A;  5DN4 A;  4CSY A;  2JGW A;  1HCC A;  2RKY A;  1FBR A;  3FGR A;  4N7E A;  2G7I A;  3EJH A;  1VVD A;  1U5M A;  3WSX A;  4C16 A;  1ELV A;  3NJA A;  2W80 A;  3TVJ A;  3VWO A;  3GXE A;  3RJ3 D;  1OK2 A;  2O39 C;  1MD7 A;  2ERJ A;  3ZRZ A;  4JHS A;  3L89 M;  2KMS A;  3SW0 X;  4PZ5 A;  4MUC A;  1HFI A;  3O8E B;  2Y8T A;  2Y8S A;  2YBY A;  3INB C;  3K3T A;  4MSL A;  2XQW C;  2ZYC A;  2EHF A;  1ZJK A;  3KZJ A;  2RLP A;  2X2Z A;  2MCY A;  1G4G A;  1GKG A;  1HFH A;  1O9A A;  2RKZ A;  4BWC A;  4ZH1 D;  1OK1 A;  2RL0 A;  2Y8R A;  2A55 A;  2CG7 A;  5DN5 A;  4YIZ A;  2EC3 A;  2CG6 A;  1OK3 A;  1Z92 B;  5HYU B;  3GOV A;  2QY0 A;  2UWN A;  3M7P A;  4APL A;  1VVC A;  4YNX A;  3OXU D;  2CKU A;  2XRD A;  1QUB A;  2IZ4 A;  3OP8 A;  2WII C;  2V8E A;  2IZ3 A;  3MQL A;  1GHQ B;  2KRI A;  1GKN A;  1C1Z A;  1SS2 A;  2BZM A;  4K12 A;  1TPG A;  1G4F A;  1TPM A;  1E5G A;  4PO7 A;  5I0Q B;  1SRZ A;  2XWB F;  4B2R A;  2RLQ A;  1NWV A;  4J38 B;  1Q3X A;  3CI0 J;  4IGD A;  3KXV A;  4AYI A;  4B2S A;  2I2L A;  4FXG G;  1QO6 A;  3CAL A;  1E88 A;  1H03 P;  3ERB A;  2MCZ A;  5HYP A;  1OK9 A;  3ZLD A;  2XRB A;  3IU3 I;  4KKD A;  4DJZ A;  2JRA A;  1H2P P;  5HZP B;  4LOS A;  3R62 A;  3ZD1 A;  1OJW A;  1H2Q P;  3IX0 A;  4ONT D;  3ZD2 A;  1QGB A;  3FGT A;  1H04 P;  2W81 A;  1RLH A; 
#chains in the Genus database with same CATH homology
 1UOT P;  4AYM A;  5FO8 C;  2LOJ A;  4WJG 2;  3T5O A;  3OED C;  4F4O C;  1OJY A;  5JPM G;  1GPZ A;  5HYT B;  1E8B A;  1PPQ A;  1TPN A;  2B5I D;  4LOT A;  2YRA A;  1OJV A;  4AYE A;  1MD8 A;  3NFP I;  4AYD A;  1CKL A;  1LY2 A;  4A5W B;  2XWJ I;  2JGX A;  4CSY A;  2JGW A;  1HCC A;  2RKY A;  1FBR A;  2G7I A;  3EJH A;  1VVD A;  1U5M A;  4C16 A;  1ELV A;  2W80 A;  3TVJ A;  3GXE A;  3RJ3 D;  1OK2 A;  2O39 C;  1MD7 A;  2ERJ A;  3ZRZ A;  4JHS A;  3L89 M;  2KMS A;  3SW0 X;  4PZ5 A;  4MUC A;  1HFI A;  3O8E B;  2YBY A;  3INB C;  2XQW C;  2EHF A;  1ZJK A;  3KZJ A;  2RLP A;  2MCY A;  1G4G A;  1GKG A;  1HFH A;  1O9A A;  2RKZ A;  4ZH1 D;  1OK1 A;  2RL0 A;  2A55 A;  2CG7 A;  2EC3 A;  2CG6 A;  1OK3 A;  1Z92 B;  5HYU B;  3GOV A;  2QY0 A;  2UWN A;  3M7P A;  1VVC A;  4YNX A;  3OXU D;  2CKU A;  2XRD A;  1QUB A;  2IZ4 A;  3OP8 A;  2WII C;  2V8E A;  2IZ3 A;  3MQL A;  1GHQ B;  2KRI A;  1GKN A;  1C1Z A;  1SS2 A;  2BZM A;  4K12 A;  1TPG A;  1G4F A;  1TPM A;  1E5G A;  5I0Q B;  1SRZ A;  2XWB F;  4B2R A;  2RLQ A;  1NWV A;  4J38 B;  1Q3X A;  4IGD A;  3KXV A;  4AYI A;  4B2S A;  4FXG G;  1QO6 A;  3CAL A;  1E88 A;  1H03 P;  3ERB A;  2MCZ A;  5HYP A;  1OK9 A;  2XRB A;  3IU3 I;  4KKD A;  4DJZ A;  2JRA A;  1H2P P;  5HZP B;  4LOS A;  3R62 A;  3ZD1 A;  1OJW A;  1H2Q P;  3IX0 A;  4ONT D;  3ZD2 A;  1QGB A;  1H04 P;  2W81 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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