1TPNA

Solution structure of the fibrin binding finger domain of tissue-type plasminogen activator determined by 1h nuclear magnetic resonance
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
50
structure length
50
Chain Sequence
SYQVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQCHSVPVKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plasminogen activator
molecule keywords TISSUE-TYPE PLASMINOGEN ACTIVATOR
publication title Solution structure of the fibrin binding finger domain of tissue-type plasminogen activator determined by 1H nuclear magnetic resonance.
pubmed doi rcsb
source organism Homo sapiens
total genus 5
structure length 50
sequence length 50
ec nomenclature ec 3.4.21.68: T-plasminogen activator.
pdb deposition date 1993-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1tpnA00
4C16A 1E8BA 2RL0A 3KZJA 4JHSA 2A55A 2IZ4A 3TVJA 1GHQB 5HYPA 2CG7A 4LOTA 2XWJI 1VVCA 1QO6A 1H04P 5JPMG 1OK2A 2RKZA 3L89M 3O8EB 3MQLA 1ELVA 3SW0X 1PPQA 3OXUD 4AYDA 1E88A 1SS2A 5I0QB 2UWNA 1FBRA 2JRAA 1NWVA 2W81A 1U5MA 2EC3A 1TPGA 1TPMA 5HZPB 1H2PP 3INBC 2EHFA 1QGBA 4CSYA 3GOVA 3ERBA 2JGWA 1H03P 3EJHA 3ZD2A 4PZ5A 3OP8A 2LOJA 3ZD1A 2MCYA 5FO8C 2RLQA 4ONTD 1UOTP 3CALA 2YRAA 3NFPI 1OJYA 2YBYA 1MD8A 3M7PA 1G4GA 2RLPA 4AYMA 5HYTB 2IZ3A 4LOSA 1HCCA 2CKUA 1ZJKA 2WIIC 2XRDA 2JGXA 4B2SA 1Q3XA 2G7IA 4YNXA 1SRZA 1G4FA 4ZH1D 1OK3A 1CKLA 2KMSA 3OEDC 3IX0A 4MUCA 1OK9A 3ZRZA 2XQWC 1C1ZA 4B2RA 4IGDA 1HFIA 2BZMA 2XRBA 3IU3I 1LY2A 2QY0A 2CG6A 4WJG2 1GKGA 1OJWA 2O39C 1E5GA 1O9AA 4AYIA 4AYEA 3R62A 2ERJA 1VVDA 2KRIA 3RJ3D 4FXGG 1GPZA 1HFHA 4J38B 1OK1A 4KKDA 3T5OA 1MD7A 2MCZA 4DJZA 3KXVA 1GKNA 4A5WB 3GXEA 2RKYA 2W80A 1H2QP 4F4OC 2XWBF 1Z92B 2V8EA 1OJVA 1TPNA 4K12A 5HYUB 2B5ID 1QUBA
chains in the Genus database with same CATH superfamily
4C16A 1E8BA 2RL0A 3KZJA 4JHSA 2A55A 2IZ4A 2Y8TA 1GHQB 3TVJA 5HYPA 2CG7A 4LOTA 2XWJI 1VVCA 1QO6A 1H04P 5JPMG 1OK2A 3NJAA 2RKZA 3L89M 3O8EB 3MQLA 1ELVA 3SW0X 1PPQA 3OXUD 2Y8SA 4AYDA 5DN5A 1E88A 1SS2A 5I0QB 2UWNA 4YIZA 1FBRA 2JRAA 3K3TA 1NWVA 2W81A 1U5MA 2EC3A 1TPGA 1TPMA 5HZPB 1H2PP 3INBC 2EHFA 1QGBA 4CSYA 3GOVA 3ERBA 2JGWA 3WSXA 2ZYCA 1H03P 3EJHA 3ZD2A 4PZ5A 3ZLEA 3OP8A 2LOJA 3ZD1A 2MCYA 5FO8C 2RLQA 4MSLA 4ONTD 1UOTP 3CALA 2YRAA 3NFPI 1OJYA 2YBYA 1MD8A 3M7PA 4N7EA 1G4GA 2RLPA 4AYMA 4PO7A 5HYTB 2IZ3A 4LOSA 1HCCA 2CKUA 1ZJKA 2WIIC 2XRDA 2JGXA 2X2ZA 4B2SA 1Q3XA 2G7IA 4YNXA 1SRZA 3VWOA 1G4FA 4ZH1D 1OK3A 1CKLA 2KMSA 3OEDC 3IX0A 4MUCA 1OK9A 3ZRZA 5DN4A 2XQWC 1C1ZA 4B2RA 4IGDA 1HFIA 2BZMA 2XRBA 3FGTA 1LY2A 2QY0A 2CG6A 3IU3I 4WJG2 1GKGA 1OJWA 2O39C 1E5GA 1O9AA 4AYIA 3CI0J 4AYEA 1RLHA 2ERJA 3R62A 1VVDA 2KRIA 3RJ3D 3WSYA 4FXGG 1GPZA 1HFHA 4J38B 1OK1A 4KKDA 3T5OA 1MD7A 2MCZA 4DJZA 2Y8RA 3KXVA 1GKNA 4A5WB 3GXEA 2RKYA 4BWCA 2W80A 1H2QP 4APLA 3FGRA 4F4OC 2XWBF 1Z92B 2V8EA 2I2LA 3F6KA 1OJVA 1TPNA 4K12A 5HYUB 2B5ID 1QUBA 3ZLDA
chains in the Genus database with same CATH topology
4C16A 1E8BA 2RL0A 3KZJA 4JHSA 2A55A 2IZ4A 3TVJA 1GHQB 5HYPA 2CG7A 4LOTA 2XWJI 1VVCA 1QO6A 1H04P 5JPMG 1OK2A 2RKZA 3L89M 3O8EB 3MQLA 1ELVA 3SW0X 1PPQA 3OXUD 4AYDA 1E88A 1SS2A 5I0QB 2UWNA 1FBRA 2JRAA 1NWVA 2W81A 1U5MA 2EC3A 1TPGA 1TPMA 5HZPB 1H2PP 3INBC 2EHFA 1QGBA 4CSYA 3GOVA 3ERBA 2JGWA 1H03P 3EJHA 3ZD2A 4PZ5A 3OP8A 2LOJA 3ZD1A 2MCYA 5FO8C 2RLQA 4ONTD 1UOTP 3CALA 2YRAA 3NFPI 1OJYA 2YBYA 1MD8A 3M7PA 1G4GA 2RLPA 4AYMA 5HYTB 2IZ3A 4LOSA 1HCCA 2CKUA 1ZJKA 2WIIC 2XRDA 2JGXA 4B2SA 1Q3XA 2G7IA 4YNXA 1SRZA 1G4FA 4ZH1D 1OK3A 1CKLA 2KMSA 3OEDC 3IX0A 4MUCA 1OK9A 3ZRZA 2XQWC 1C1ZA 4B2RA 4IGDA 1HFIA 2BZMA 2XRBA 3IU3I 1LY2A 2QY0A 2CG6A 4WJG2 1GKGA 1OJWA 2O39C 1E5GA 1O9AA 4AYIA 4AYEA 3R62A 2ERJA 1VVDA 2KRIA 3RJ3D 4FXGG 1GPZA 1HFHA 4J38B 1OK1A 4KKDA 3T5OA 1MD7A 2MCZA 4DJZA 3KXVA 1GKNA 4A5WB 3GXEA 2RKYA 2W80A 1H2QP 4F4OC 2XWBF 1Z92B 2V8EA 1OJVA 1TPNA 4K12A 5HYUB 2B5ID 1QUBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C16 A;  1E8B A;  2RL0 A;  3KZJ A;  4JHS A;  2A55 A;  2IZ4 A;  3TVJ A;  1GHQ B;  5HYP A;  2CG7 A;  4LOT A;  2XWJ I;  1VVC A;  1QO6 A;  1H04 P;  5JPM G;  1OK2 A;  2RKZ A;  3L89 M;  3O8E B;  3MQL A;  1ELV A;  3SW0 X;  1PPQ A;  3OXU D;  4AYD A;  1E88 A;  1SS2 A;  5I0Q B;  2UWN A;  1FBR A;  2JRA A;  1NWV A;  2W81 A;  1U5M A;  2EC3 A;  1TPG A;  1TPM A;  5HZP B;  1H2P P;  3INB C;  2EHF A;  1QGB A;  4CSY A;  3GOV A;  3ERB A;  2JGW A;  1H03 P;  3EJH A;  3ZD2 A;  4PZ5 A;  3OP8 A;  2LOJ A;  3ZD1 A;  2MCY A;  5FO8 C;  2RLQ A;  4ONT D;  1UOT P;  3CAL A;  2YRA A;  3NFP I;  1OJY A;  2YBY A;  1MD8 A;  3M7P A;  1G4G A;  2RLP A;  4AYM A;  5HYT B;  2IZ3 A;  4LOS A;  1HCC A;  2CKU A;  1ZJK A;  2WII C;  2XRD A;  2JGX A;  4B2S A;  1Q3X A;  2G7I A;  4YNX A;  1SRZ A;  1G4F A;  4ZH1 D;  1OK3 A;  1CKL A;  2KMS A;  3OED C;  3IX0 A;  4MUC A;  1OK9 A;  3ZRZ A;  2XQW C;  1C1Z A;  4B2R A;  4IGD A;  1HFI A;  2BZM A;  2XRB A;  3IU3 I;  1LY2 A;  2QY0 A;  2CG6 A;  4WJG 2;  1GKG A;  1OJW A;  2O39 C;  1E5G A;  1O9A A;  4AYI A;  4AYE A;  3R62 A;  2ERJ A;  1VVD A;  2KRI A;  3RJ3 D;  4FXG G;  1GPZ A;  1HFH A;  4J38 B;  1OK1 A;  4KKD A;  3T5O A;  1MD7 A;  2MCZ A;  4DJZ A;  3KXV A;  1GKN A;  4A5W B;  3GXE A;  2RKY A;  2W80 A;  1H2Q P;  4F4O C;  2XWB F;  1Z92 B;  2V8E A;  1OJV A;  1TPN A;  4K12 A;  5HYU B;  2B5I D;  1QUB A; 
#chains in the Genus database with same CATH topology
 4C16 A;  1E8B A;  2RL0 A;  3KZJ A;  4JHS A;  2A55 A;  2IZ4 A;  2Y8T A;  1GHQ B;  3TVJ A;  5HYP A;  2CG7 A;  4LOT A;  2XWJ I;  1VVC A;  1QO6 A;  1H04 P;  5JPM G;  1OK2 A;  3NJA A;  2RKZ A;  3L89 M;  3O8E B;  3MQL A;  1ELV A;  3SW0 X;  1PPQ A;  3OXU D;  2Y8S A;  4AYD A;  5DN5 A;  1E88 A;  1SS2 A;  5I0Q B;  2UWN A;  4YIZ A;  1FBR A;  2JRA A;  3K3T A;  1NWV A;  2W81 A;  1U5M A;  2EC3 A;  1TPG A;  1TPM A;  5HZP B;  1H2P P;  3INB C;  2EHF A;  1QGB A;  4CSY A;  3GOV A;  3ERB A;  2JGW A;  3WSX A;  2ZYC A;  1H03 P;  3EJH A;  3ZD2 A;  4PZ5 A;  3ZLE A;  3OP8 A;  2LOJ A;  3ZD1 A;  2MCY A;  5FO8 C;  2RLQ A;  4MSL A;  4ONT D;  1UOT P;  3CAL A;  2YRA A;  3NFP I;  1OJY A;  2YBY A;  1MD8 A;  3M7P A;  4N7E A;  1G4G A;  2RLP A;  4AYM A;  4PO7 A;  5HYT B;  2IZ3 A;  4LOS A;  1HCC A;  2CKU A;  1ZJK A;  2WII C;  2XRD A;  2JGX A;  2X2Z A;  4B2S A;  1Q3X A;  2G7I A;  4YNX A;  1SRZ A;  3VWO A;  1G4F A;  4ZH1 D;  1OK3 A;  1CKL A;  2KMS A;  3OED C;  3IX0 A;  4MUC A;  1OK9 A;  3ZRZ A;  5DN4 A;  2XQW C;  1C1Z A;  4B2R A;  4IGD A;  1HFI A;  2BZM A;  2XRB A;  3FGT A;  1LY2 A;  2QY0 A;  2CG6 A;  3IU3 I;  4WJG 2;  1GKG A;  1OJW A;  2O39 C;  1E5G A;  1O9A A;  4AYI A;  3CI0 J;  4AYE A;  1RLH A;  2ERJ A;  3R62 A;  1VVD A;  2KRI A;  3RJ3 D;  3WSY A;  4FXG G;  1GPZ A;  1HFH A;  4J38 B;  1OK1 A;  4KKD A;  3T5O A;  1MD7 A;  2MCZ A;  4DJZ A;  2Y8R A;  3KXV A;  1GKN A;  4A5W B;  3GXE A;  2RKY A;  4BWC A;  2W80 A;  1H2Q P;  4APL A;  3FGR A;  4F4O C;  2XWB F;  1Z92 B;  2V8E A;  2I2L A;  3F6K A;  1OJV A;  1TPN A;  4K12 A;  5HYU B;  2B5I D;  1QUB A;  3ZLD A; 
#chains in the Genus database with same CATH homology
 4C16 A;  1E8B A;  2RL0 A;  3KZJ A;  4JHS A;  2A55 A;  2IZ4 A;  3TVJ A;  1GHQ B;  5HYP A;  2CG7 A;  4LOT A;  2XWJ I;  1VVC A;  1QO6 A;  1H04 P;  5JPM G;  1OK2 A;  2RKZ A;  3L89 M;  3O8E B;  3MQL A;  1ELV A;  3SW0 X;  1PPQ A;  3OXU D;  4AYD A;  1E88 A;  1SS2 A;  5I0Q B;  2UWN A;  1FBR A;  2JRA A;  1NWV A;  2W81 A;  1U5M A;  2EC3 A;  1TPG A;  1TPM A;  5HZP B;  1H2P P;  3INB C;  2EHF A;  1QGB A;  4CSY A;  3GOV A;  3ERB A;  2JGW A;  1H03 P;  3EJH A;  3ZD2 A;  4PZ5 A;  3OP8 A;  2LOJ A;  3ZD1 A;  2MCY A;  5FO8 C;  2RLQ A;  4ONT D;  1UOT P;  3CAL A;  2YRA A;  3NFP I;  1OJY A;  2YBY A;  1MD8 A;  3M7P A;  1G4G A;  2RLP A;  4AYM A;  5HYT B;  2IZ3 A;  4LOS A;  1HCC A;  2CKU A;  1ZJK A;  2WII C;  2XRD A;  2JGX A;  4B2S A;  1Q3X A;  2G7I A;  4YNX A;  1SRZ A;  1G4F A;  4ZH1 D;  1OK3 A;  1CKL A;  2KMS A;  3OED C;  3IX0 A;  4MUC A;  1OK9 A;  3ZRZ A;  2XQW C;  1C1Z A;  4B2R A;  4IGD A;  1HFI A;  2BZM A;  2XRB A;  3IU3 I;  1LY2 A;  2QY0 A;  2CG6 A;  4WJG 2;  1GKG A;  1OJW A;  2O39 C;  1E5G A;  1O9A A;  4AYI A;  4AYE A;  3R62 A;  2ERJ A;  1VVD A;  2KRI A;  3RJ3 D;  4FXG G;  1GPZ A;  1HFH A;  4J38 B;  1OK1 A;  4KKD A;  3T5O A;  1MD7 A;  2MCZ A;  4DJZ A;  3KXV A;  1GKN A;  4A5W B;  3GXE A;  2RKY A;  2W80 A;  1H2Q P;  4F4O C;  2XWB F;  1Z92 B;  2V8E A;  1OJV A;  1TPN A;  4K12 A;  5HYU B;  2B5I D;  1QUB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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