1TTWA

Crystal structure of the yersinia pestis type iii secretion chaperone sych in complex with a stable fragment of yscm2
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
118
structure length
118
Chain Sequence
TYSSLLEEFATELGLEEIETNELGHGAVTIDKIWVVHLAPINEKELVAFMRAGILTGQSQLYDILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDTSGTQLASVLTSLVDKAVTLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords secretion chaperone
publication title Structure of the Yersinia pestis type III secretion chaperone SycH in complex with a stable fragment of YscM2.
pubmed doi rcsb
source organism Yersinia pestis
total genus 25
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2004-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05932 CesT Tir chaperone protein (CesT) family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.10 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 1ttwA00
2FM8A 3KXYA 3EPUA 1TTWA 2BSJA 2BHOA 2PLGA 3CXJA 1N5BA 1JYAA 1RY9A 4JMFB 1K3SA 2BSIA 4G6TA 4AKXA 1L2WA 1JYOA 1S28A 1K3EA 1K6ZA 4GF3A 2XGAA 2BSHA 1XKPC 3TU3A 1XKPB
chains in the Genus database with same CATH superfamily
1K8KD 3VX8B 3UKUD 2MQDA 3TU3A 2P9ID 2FM8A 3DXKF 3VX7B 3KXYA 3DXMF 4H5BA 1U2VF 2P9PF 3DWLD 3EPUA 3RSEF 1TTWA 2BSJA 2BHOA 2KC5A 2P9KF 2PLGA 3CXJA 4JD2F 4XEIF 1N5BA 2P9SF 1JYAA 1RY9A 1TYQD 2P9LF 4JMFB 1K3SA 2P9ND 2BSIA 4G6TA 3UKRD 4AKXA 3ULED 2P9UF 1L2WA 2DYTA 1K8KF 3UKUF 1JYOA 1S28A 2P9IF 2OD0A 4EBRA 1K3EA 1K6ZA 4GSLC 3DXKD 1U2VD 2LPUA 2P9PD 3DWLF 3DXMD 3RSED 4JD2D 1TYQF 2P9KD 4XEID 4GF3A 2P9NF 2P9SD 2XGAA 3ULEF 2P9LD 3UKRF 2BSHA 1XKPC 2P9UD 1XKPB
chains in the Genus database with same CATH topology
1K8KD 3VX8B 3UKUD 2MQDA 3TU3A 2P9ID 2FM8A 3DXKF 3VX7B 3KXYA 3DXMF 4H5BA 1U2VF 2P9PF 3DWLD 3EPUA 3RSEF 1TTWA 2BSJA 2BHOA 2KC5A 2P9KF 2PLGA 3CXJA 4JD2F 4XEIF 1N5BA 2P9SF 1JYAA 1RY9A 1TYQD 2P9LF 4JMFB 1K3SA 2P9ND 2BSIA 4G6TA 3UKRD 4AKXA 3ULED 2P9UF 1L2WA 2DYTA 1K8KF 3UKUF 1JYOA 1S28A 2P9IF 4EBRA 1K3EA 1K6ZA 4GSLC 3DXKD 1U2VD 2LPUA 2P9PD 3DWLF 3DXMD 3RSED 4JD2D 1TYQF 2P9KD 4XEID 4GF3A 2P9NF 2P9SD 2XGAA 3ULEF 2P9LD 3UKRF 2BSHA 1XKPC 2P9UD 1XKPB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FM8 A;  3KXY A;  3EPU A;  1TTW A;  2BSJ A;  2BHO A;  2PLG A;  3CXJ A;  1N5B A;  1JYA A;  1RY9 A;  4JMF B;  1K3S A;  2BSI A;  4G6T A;  4AKX A;  1L2W A;  1JYO A;  1S28 A;  1K3E A;  1K6Z A;  4GF3 A;  2XGA A;  2BSH A;  1XKP C;  3TU3 A;  1XKP B; 
#chains in the Genus database with same CATH topology
 1K8K D;  3VX8 B;  3UKU D;  2MQD A;  3TU3 A;  2P9I D;  2FM8 A;  3DXK F;  3VX7 B;  3KXY A;  3DXM F;  4H5B A;  1U2V F;  2P9P F;  3DWL D;  3EPU A;  3RSE F;  1TTW A;  2BSJ A;  2BHO A;  2KC5 A;  2P9K F;  2PLG A;  3CXJ A;  4JD2 F;  4XEI F;  1N5B A;  2P9S F;  1JYA A;  1RY9 A;  1TYQ D;  2P9L F;  4JMF B;  1K3S A;  2P9N D;  2BSI A;  4G6T A;  3UKR D;  4AKX A;  3ULE D;  2P9U F;  1L2W A;  2DYT A;  1K8K F;  3UKU F;  1JYO A;  1S28 A;  2P9I F;  2OD0 A;  4EBR A;  1K3E A;  1K6Z A;  4GSL C;  3DXK D;  1U2V D;  2LPU A;  2P9P D;  3DWL F;  3DXM D;  3RSE D;  4JD2 D;  1TYQ F;  2P9K D;  4XEI D;  4GF3 A;  2P9N F;  2P9S D;  2XGA A;  3ULE F;  2P9L D;  3UKR F;  2BSH A;  1XKP C;  2P9U D;  1XKP B; 
#chains in the Genus database with same CATH homology
 1K8K D;  3VX8 B;  3UKU D;  2MQD A;  3TU3 A;  2P9I D;  2FM8 A;  3DXK F;  3VX7 B;  3KXY A;  3DXM F;  4H5B A;  1U2V F;  2P9P F;  3DWL D;  3EPU A;  3RSE F;  1TTW A;  2BSJ A;  2BHO A;  2KC5 A;  2P9K F;  2PLG A;  3CXJ A;  4JD2 F;  4XEI F;  1N5B A;  2P9S F;  1JYA A;  1RY9 A;  1TYQ D;  2P9L F;  4JMF B;  1K3S A;  2P9N D;  2BSI A;  4G6T A;  3UKR D;  4AKX A;  3ULE D;  2P9U F;  1L2W A;  2DYT A;  1K8K F;  3UKU F;  1JYO A;  1S28 A;  2P9I F;  4EBR A;  1K3E A;  1K6Z A;  4GSL C;  3DXK D;  1U2V D;  2LPU A;  2P9P D;  3DWL F;  3DXM D;  3RSE D;  4JD2 D;  1TYQ F;  2P9K D;  4XEI D;  4GF3 A;  2P9N F;  2P9S D;  2XGA A;  3ULE F;  2P9L D;  3UKR F;  2BSH A;  1XKP C;  2P9U D;  1XKP B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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