1TWAL

Rna polymerase ii complexed with atp
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords DNA-directed RNA polymerase II largest subunit
publication title Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center.
pubmed doi rcsb
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2004-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 1twaL00
4BY7L 3GTOL 3GTLL 4A3DL 5C3EL 4BBRL 2VUML 3I4NL 3I4ML 1TWFL 4BBSL 4A3JL 1R9TL 4A3EL 1TWCL 4C3IL 5IYCL 2R92L 3HOYL 3RZOL 1Y1VL 2JA7L 4C3JL 4A3FL 3S17L 2B63L 3PO2L 5IYDL 5C4XL 4AYBP 4A3BL 2YU9L 3FKIL 3CQZL 3GTJL 3S1NL 1WCML 5C4JL 5IP9L 2WAQP 2PMZP 4A3LL 2NVYL 2E2JL 2JA5L 5C44L 4QIWP 4BY1L 1K83L 4Y52L 5FJ8L 1Y1WL 5M3FL 3K7AL 4X6AL 2WB1P 1TWGL 3S14L 4BXXL 3GTKL 5M3ML 2Y0SP 3GTPL 3M4OL 3H3VM 5FLML 3S2DL 4A3IL 3HKZP 3S2HL 1TWAL 4A3CL 2E2HL 2E2IL 5IP7L 3HOZL 1I50L 1I6HL 5IYBL 2R7ZL 2NVQL 4C3HL 5M5WL 3HOVL 2R93L 3M3YL 3S15L 3HOXL 4A3ML 3RZDL 3GTML 3HOWL 3GTGL 2NVXL 3HOUL 4A3KL 3H0GL 1I3QL 4C2M1 3PO3L 3S1QL 5M5XL 2NVTL 3S1RL 2JA6L 2JA8L 3GTQL 3S1ML 5M5YL 4Y7NL 1SFOL 3S16L 4A93L 4A3GL 1TWHL
chains in the Genus database with same CATH superfamily
4BY7L 2QL0A 3GTLL 2PYAA 3LWPB 5AI2A 4BBRL 4LHNA 1B2OA 3I4NL 1C09A 1TWFL 4BBSL 4A3JL 4POFA 3WWLA 3HOYL 1PFYA 3IU3I 4RXNA 3PKIA 1Y1VL 5MFPA 2JA7L 4A3FL 3LWRB 2B63L 3KYXA 7RXNA 2O5JD 1VZIA 8RXNA 5C4XL 2C6AA 2APOB 4XXBB 3FKIL 3RZ6A 3S1NL 5GAGc 1DX8A 1QQTA 2WAQP 5H1Sc 4A3LL 3VPBE 1CAAA 4Y52L 5FJ8L 1DVBA 1LKPA 4BXXL 2Y0SP 3M4OL 3H3VM 3S2DL 1BFYA 2XJSA 3HJWB 2M6PA 1B71A 2ERSA 3JR7A 5IP7L 1IRNA 4JAEA 4JADA 3HJYB 2NVQL 4C3HL 2PSMC 3LWQB 3HOVL 4ME3A 2NYDA 1BRFA 3HOXL 3P8BA 4A3ML 3HOWL 4AI2A 4A3KL 1E8JA 4YWLA 1P7PA 1R0HA 1IU5A 2JA8L 4AI0A 4Y7NL 4AR5A 1RWDA 3S16L 1H7VA 3H9CA 1LKMA 5K2ME 1YK5A 2XJRA 3GTOL 4A3DL 5C3EL 2XJPA 4K9FA 2VUML 2A6HD 1WJVA 3PL5A 1IU6A 4C3IL 3WWNB 2B5ID 1YV1A 1S30A 3P2AA 4AYBP 4A3BL 2Z3RB 4AHYA 1IROA 2LCQA 5C4JL 5IP9L 3B0AB 3A44A 2ERJA 5AI3A 2JA5L 1T9OA 3PIO1 1LTLA 4WFN1 1K83L 5JVG1 3J7Y1 5EINC 5M3FL 3K7AL 1TWGL 3HAXC 3S14L 5GAEc 5MFZA 5M3ML 2RDVA 4AHXA 3PIP1 3HKZP 3S2HL 2E2HL 1I50L 2BE5D 5IYBL 1SMWA 3MQKB 1Z92B 4E6YA 5M5WL 4AR4A 1QCVA 5MLC3 3M3YL 1YUXA 2L0ZA 3RZDL 2JI3A 3GTGL 2GMGA 3HOUL 1JYBA 3B08B 5M5XL 2NVTL 1RDVA 2JA6L 3GTQL 2V3BB 5DM71 4A3GL 1RB9A 2DSXA 1B13A 1T9QA 2A6ED 1S2ZA 1RDGA 5JVH1 1SMMA 3H9BA 1BQ9A 3RYGA 3I4ML 4V196 1R9TL 1CADA 3LWVB 4U671 5DM61 3S17L 3PO2L 1NXEA 1RYQA 1QYBA 2Z3QB 4ZN1B 2YU9L 2CKAA 3KYUA 2PVEA 3CQZL 1FHMA 1T9PA 3GTJL 3PKJA 2XJVA 4TPUA 2AYJA 1SMUA 2NVYL 2E2JL 2A68D 4BY1L 1PFWA 2PPTA 2MS3A 1PFUA 3SS2A 2AUSB 2WB1P 1R0JA 5GADc 4AR3A 2M6OA 3H99A 2C6BA 5FLML 5RXNA 4A3IL 3NFPI 1RYTA 4A3CL 6RXNA 2E2IL 1I6HL 2EY4E 2VL6A 3QVDA 2R7ZL 1R0FA 1NXGA 2ZIXA 1YUZA 3QQCE 4AI3A 3MSUA 3RZTA 1BE7A 5AN9H 3PO3L 4C2M1 1OWCA 2KKDA 3KYVA 5GAHc 2KN9A 3S1RL 3KYWA 2XJUA 3H97A 3J7Z1 4A93L 2AQCA 4GS7D 1NNQA 4XGHA 1B2JA 5MF6A 3PWFA 4A3EL 1TWCL 5IYCL 2R92L 3RZOL 1ZRPA 5IY0A 1OWBA 4C3JL 4YWMA 2JI2A 1S24A 3PZAA 5IYDL 1LKOA 4G6BA 3MPSA 4AR6A 1WCML 3K35A 3ZG6A 1F4LA 4TVMA 4ZN3B 2PMZP 2JI1A 2CR8A 5C44L 4QIWP 4LHLA 2XJQA 4UY81 2K2DA 1Y1WL 1VCXA 4POGA 4X6AL 4AI1A 2PVXA 4B8CD 3GTKL 3FDJA 3LPEB 3GTPL 1FHHA 3LWOB 1VZGA 2J9UB 1TWAL 2HR5A 3HOZL 4JAFA 4JAGA 5MGNA 1BQ8A 2CKCA 2XJTA 4AHWA 2H12A 1R0GA 2HVYC 1PFVA 2V0EA 2R93L 2RFKB 2A69D 1R0IA 3KYYA 3S15L 5EIOC 3GTML 1IW7D 2V0FA 2NVXL 3H0GL 1I3QL 1PZXA 3LNLA 3S1QL 4AHZA 1ODHA 2M4YA 3S1ML 1YK4A 5M5YL 1VZHA 1SFOL 1TWHL 2M4VA
chains in the Genus database with same CATH topology
4BY7L 3GTOL 3GTLL 4A3DL 5C3EL 4BBRL 2VUML 3I4NL 3I4ML 1TWFL 4BBSL 4A3JL 1R9TL 4A3EL 1TWCL 4C3IL 5IYCL 2R92L 3HOYL 3RZOL 1Y1VL 2JA7L 4C3JL 4A3FL 3S17L 2B63L 3PO2L 5IYDL 5C4XL 4AYBP 4A3BL 2YU9L 3FKIL 3CQZL 3GTJL 3S1NL 1WCML 5C4JL 5IP9L 2WAQP 2PMZP 4A3LL 2NVYL 2E2JL 2JA5L 5C44L 4QIWP 4BY1L 1K83L 4Y52L 5FJ8L 1Y1WL 5M3FL 3K7AL 4X6AL 2WB1P 1TWGL 3S14L 4BXXL 3GTKL 5M3ML 2Y0SP 3GTPL 3M4OL 3H3VM 5FLML 3S2DL 4A3IL 3HKZP 3S2HL 1TWAL 4A3CL 2E2HL 2E2IL 5IP7L 3HOZL 1I50L 1I6HL 5IYBL 2R7ZL 2NVQL 4C3HL 5M5WL 3HOVL 2R93L 3M3YL 3S15L 3HOXL 4A3ML 3RZDL 3GTML 3HOWL 3GTGL 2NVXL 3HOUL 4A3KL 3H0GL 1I3QL 4C2M1 3PO3L 3S1QL 5M5XL 2NVTL 3S1RL 2JA6L 2JA8L 3GTQL 3S1ML 5M5YL 4Y7NL 1SFOL 3S16L 4A93L 4A3GL 1TWHL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BY7 L;  3GTO L;  3GTL L;  4A3D L;  5C3E L;  4BBR L;  2VUM L;  3I4N L;  3I4M L;  1TWF L;  4BBS L;  4A3J L;  1R9T L;  4A3E L;  1TWC L;  4C3I L;  5IYC L;  2R92 L;  3HOY L;  3RZO L;  1Y1V L;  2JA7 L;  4C3J L;  4A3F L;  3S17 L;  2B63 L;  3PO2 L;  5IYD L;  5C4X L;  4AYB P;  4A3B L;  2YU9 L;  3FKI L;  3CQZ L;  3GTJ L;  3S1N L;  1WCM L;  5C4J L;  5IP9 L;  2WAQ P;  2PMZ P;  4A3L L;  2NVY L;  2E2J L;  2JA5 L;  5C44 L;  4QIW P;  4BY1 L;  1K83 L;  4Y52 L;  5FJ8 L;  1Y1W L;  5M3F L;  3K7A L;  4X6A L;  2WB1 P;  1TWG L;  3S14 L;  4BXX L;  3GTK L;  5M3M L;  2Y0S P;  3GTP L;  3M4O L;  3H3V M;  5FLM L;  3S2D L;  4A3I L;  3HKZ P;  3S2H L;  1TWA L;  4A3C L;  2E2H L;  2E2I L;  5IP7 L;  3HOZ L;  1I50 L;  1I6H L;  5IYB L;  2R7Z L;  2NVQ L;  4C3H L;  5M5W L;  3HOV L;  2R93 L;  3M3Y L;  3S15 L;  3HOX L;  4A3M L;  3RZD L;  3GTM L;  3HOW L;  3GTG L;  2NVX L;  3HOU L;  4A3K L;  3H0G L;  1I3Q L;  4C2M 1;  3PO3 L;  3S1Q L;  5M5X L;  2NVT L;  3S1R L;  2JA6 L;  2JA8 L;  3GTQ L;  3S1M L;  5M5Y L;  4Y7N L;  1SFO L;  3S16 L;  4A93 L;  4A3G L;  1TWH L; 
#chains in the Genus database with same CATH topology
 4BY7 L;  2QL0 A;  3GTL L;  2PYA A;  3LWP B;  5AI2 A;  4BBR L;  4LHN A;  1B2O A;  3I4N L;  1C09 A;  1TWF L;  4BBS L;  4A3J L;  4POF A;  3WWL A;  3HOY L;  1PFY A;  3IU3 I;  4RXN A;  3PKI A;  1Y1V L;  5MFP A;  2JA7 L;  4A3F L;  3LWR B;  2B63 L;  3KYX A;  7RXN A;  2O5J D;  1VZI A;  8RXN A;  5C4X L;  2C6A A;  2APO B;  4XXB B;  3FKI L;  3RZ6 A;  3S1N L;  5GAG c;  1DX8 A;  1QQT A;  2WAQ P;  5H1S c;  4A3L L;  3VPB E;  1CAA A;  4Y52 L;  5FJ8 L;  1DVB A;  1LKP A;  4BXX L;  2Y0S P;  3M4O L;  3H3V M;  3S2D L;  1BFY A;  2XJS A;  3HJW B;  2M6P A;  1B71 A;  2ERS A;  3JR7 A;  5IP7 L;  1IRN A;  4JAE A;  4JAD A;  3HJY B;  2NVQ L;  4C3H L;  2PSM C;  3LWQ B;  3HOV L;  4ME3 A;  2NYD A;  1BRF A;  3HOX L;  3P8B A;  4A3M L;  3HOW L;  4AI2 A;  4A3K L;  1E8J A;  4YWL A;  1P7P A;  1R0H A;  1IU5 A;  2JA8 L;  4AI0 A;  4Y7N L;  4AR5 A;  1RWD A;  3S16 L;  1H7V A;  3H9C A;  1LKM A;  5K2M E;  1YK5 A;  2XJR A;  3GTO L;  4A3D L;  5C3E L;  2XJP A;  4K9F A;  2VUM L;  2A6H D;  1WJV A;  3PL5 A;  1IU6 A;  4C3I L;  3WWN B;  2B5I D;  1YV1 A;  1S30 A;  3P2A A;  4AYB P;  4A3B L;  2Z3R B;  4AHY A;  1IRO A;  2LCQ A;  5C4J L;  5IP9 L;  3B0A B;  3A44 A;  2ERJ A;  5AI3 A;  2JA5 L;  1T9O A;  3PIO 1;  1LTL A;  4WFN 1;  1K83 L;  5JVG 1;  3J7Y 1;  5EIN C;  5M3F L;  3K7A L;  1TWG L;  3HAX C;  3S14 L;  5GAE c;  5MFZ A;  5M3M L;  2RDV A;  4AHX A;  3PIP 1;  3HKZ P;  3S2H L;  2E2H L;  1I50 L;  2BE5 D;  5IYB L;  1SMW A;  3MQK B;  1Z92 B;  4E6Y A;  5M5W L;  4AR4 A;  1QCV A;  5MLC 3;  3M3Y L;  1YUX A;  2L0Z A;  3RZD L;  2JI3 A;  3GTG L;  2GMG A;  3HOU L;  1JYB A;  3B08 B;  5M5X L;  2NVT L;  1RDV A;  2JA6 L;  3GTQ L;  2V3B B;  5DM7 1;  4A3G L;  1RB9 A;  2DSX A;  1B13 A;  1T9Q A;  2A6E D;  1S2Z A;  1RDG A;  5JVH 1;  1SMM A;  3H9B A;  1BQ9 A;  3RYG A;  3I4M L;  4V19 6;  1R9T L;  1CAD A;  3LWV B;  4U67 1;  5DM6 1;  3S17 L;  3PO2 L;  1NXE A;  1RYQ A;  1QYB A;  2Z3Q B;  4ZN1 B;  2YU9 L;  2CKA A;  3KYU A;  2PVE A;  3CQZ L;  1FHM A;  1T9P A;  3GTJ L;  3PKJ A;  2XJV A;  4TPU A;  2AYJ A;  1SMU A;  2NVY L;  2E2J L;  2A68 D;  4BY1 L;  1PFW A;  2PPT A;  2MS3 A;  1PFU A;  3SS2 A;  2AUS B;  2WB1 P;  1R0J A;  5GAD c;  4AR3 A;  2M6O A;  3H99 A;  2C6B A;  5FLM L;  5RXN A;  4A3I L;  3NFP I;  1RYT A;  4A3C L;  6RXN A;  2E2I L;  1I6H L;  2EY4 E;  2VL6 A;  3QVD A;  2R7Z L;  1R0F A;  1NXG A;  2ZIX A;  1YUZ A;  3QQC E;  4AI3 A;  3MSU A;  3RZT A;  1BE7 A;  5AN9 H;  3PO3 L;  4C2M 1;  1OWC A;  2KKD A;  3KYV A;  5GAH c;  2KN9 A;  3S1R L;  3KYW A;  2XJU A;  3H97 A;  3J7Z 1;  4A93 L;  2AQC A;  4GS7 D;  1NNQ A;  4XGH A;  1B2J A;  5MF6 A;  3PWF A;  4A3E L;  1TWC L;  5IYC L;  2R92 L;  3RZO L;  1ZRP A;  5IY0 A;  1OWB A;  4C3J L;  4YWM A;  2JI2 A;  1S24 A;  3PZA A;  5IYD L;  1LKO A;  4G6B A;  3MPS A;  4AR6 A;  1WCM L;  3K35 A;  3ZG6 A;  1F4L A;  4TVM A;  4ZN3 B;  2PMZ P;  2JI1 A;  2CR8 A;  5C44 L;  4QIW P;  4LHL A;  2XJQ A;  4UY8 1;  2K2D A;  1Y1W L;  1VCX A;  4POG A;  4X6A L;  4AI1 A;  2PVX A;  4B8C D;  3GTK L;  3FDJ A;  3LPE B;  3GTP L;  1FHH A;  3LWO B;  1VZG A;  2J9U B;  1TWA L;  2HR5 A;  3HOZ L;  4JAF A;  4JAG A;  5MGN A;  1BQ8 A;  2CKC A;  2XJT A;  4AHW A;  2H12 A;  1R0G A;  2HVY C;  1PFV A;  2V0E A;  2R93 L;  2RFK B;  2A69 D;  1R0I A;  3KYY A;  3S15 L;  5EIO C;  3GTM L;  1IW7 D;  2V0F A;  2NVX L;  3H0G L;  1I3Q L;  1PZX A;  3LNL A;  3S1Q L;  4AHZ A;  1ODH A;  2M4Y A;  3S1M L;  1YK4 A;  5M5Y L;  1VZH A;  1SFO L;  1TWH L;  2M4V A; 
#chains in the Genus database with same CATH homology
 4BY7 L;  3GTO L;  3GTL L;  4A3D L;  5C3E L;  4BBR L;  2VUM L;  3I4N L;  3I4M L;  1TWF L;  4BBS L;  4A3J L;  1R9T L;  4A3E L;  1TWC L;  4C3I L;  5IYC L;  2R92 L;  3HOY L;  3RZO L;  1Y1V L;  2JA7 L;  4C3J L;  4A3F L;  3S17 L;  2B63 L;  3PO2 L;  5IYD L;  5C4X L;  4AYB P;  4A3B L;  2YU9 L;  3FKI L;  3CQZ L;  3GTJ L;  3S1N L;  1WCM L;  5C4J L;  5IP9 L;  2WAQ P;  2PMZ P;  4A3L L;  2NVY L;  2E2J L;  2JA5 L;  5C44 L;  4QIW P;  4BY1 L;  1K83 L;  4Y52 L;  5FJ8 L;  1Y1W L;  5M3F L;  3K7A L;  4X6A L;  2WB1 P;  1TWG L;  3S14 L;  4BXX L;  3GTK L;  5M3M L;  2Y0S P;  3GTP L;  3M4O L;  3H3V M;  5FLM L;  3S2D L;  4A3I L;  3HKZ P;  3S2H L;  1TWA L;  4A3C L;  2E2H L;  2E2I L;  5IP7 L;  3HOZ L;  1I50 L;  1I6H L;  5IYB L;  2R7Z L;  2NVQ L;  4C3H L;  5M5W L;  3HOV L;  2R93 L;  3M3Y L;  3S15 L;  3HOX L;  4A3M L;  3RZD L;  3GTM L;  3HOW L;  3GTG L;  2NVX L;  3HOU L;  4A3K L;  3H0G L;  1I3Q L;  4C2M 1;  3PO3 L;  3S1Q L;  5M5X L;  2NVT L;  3S1R L;  2JA6 L;  2JA8 L;  3GTQ L;  3S1M L;  5M5Y L;  4Y7N L;  1SFO L;  3S16 L;  4A93 L;  4A3G L;  1TWH L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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