1TYVA

Structure of tailspike-protein
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
554
structure length
542
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral adhesion protein
total genus 188
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1996-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tyvA00
3RIQA 1QA2A 3SZEA 3ML3A 1WXRA 1TYWA 2XC1A 1QRBA 1TYUA 3SYJA 1TSPA 1QRCA 1TYXA 2VFPA 3H09A 1QA1A 2V5IA 2VFQA 1TYVA 2VFOA 2VFMA 1QQ1A 4KH3A 3AK5A 4OM9A 2IOUG 1QA3A 1CLWA 3TH0A 1DABA 2VFNA
chains in the Genus database with same CATH superfamily
3NB2A 2XTXA 1QA2A 1BHEA 2X85A 1OGOX 4XL9A 4Z03A 4Z05A 2YUHA 4YEIA 4OJPA 4XR6A 4XNFA 2XC1A 3GQ9A 4XKWA 2QYUA 4YZXA 3VMVA 2UVEA 1O8FA 3B4NA 1TYXA 4XM3A 1EA0A 2VFPA 1XG2A 2XT2A 2W7ZA 1AIRA 4OJOA 1OFDA 4YZ0A 1NHCA 1JTAA 3SQVA 2O1DA 4XLHA 1KCDA 2VFQA 2BM5A 2X6YA 4XQFA 2NTBA 2B0RA 3LYCA 1QQ1A 2VFMA 3UW0A 1GQ8A 2F3LA 2ODLA 4KH3A 4XORA 5C1CA 2PECA 2IOUG 1X0CA 3NAWA 1QCXA 3GRHA 5DNSA 1DABA 2NT6A 2NZMA 4OJLA 1JRGA 2NT9A 2NSPA 2O6WA 2VFNA 4OJ6A 3GQ7A 3EQOA 2O17A 4OZYA 4XN0A 4OJ5A 1HG8A 1OFEA 3LMWA 4W8RA 4XLFA 1TYWA 2QZAA 2XTWA 4XONA 3LJYA 3N6ZA 2Z8GA 2VBMA 1IB4A 2V5IA 1VBLA 1DBOA 1O8JA 2O0WA 3PETA 2VBKA 4XKVA 4XLEA 4YEJA 2NTPA 4OZZA 3T9GA 4YZAA 3VSTA 4W8QA 4YELA 2G0YA 3JURA 3P4GA 1QA3A 1O8DA 3BH7B 1RMGA 1DBGA 1O88A 1LM1A 4U4BA 4YCQA 2BM6A 3RIQA 3VMWA 5C1EA 3EQNA 3B8YA 4EW9A 1KTWA 1O8GA 1K8FA 1LLWA 3BH6B 3DU1X 3ZPPA 3ZSCA 1CZFA 2NTQA 4C2LA 1WXRA 3VSUA 1TYUA 3SYJA 1QRCA 1O8EA 1TSPA 2J8IA 1IA5A 2VJIA 4XN3A 4W8TA 1HF2A 1IDJA 2QX3A 4V02C 4YC5A 3SUCA 5JMCB 2BX6A 1QJVA 1K4ZA 1O8LA 2XTYA 1K5CA 2O0VA 1PE9A 4HWVA 2IQ7A 4XLAA 3VSVA 2BM7A 2UVFA 3KRGA 1WMRA 4MXNA 4NK6A 4OM9A 3SY2A 2X6WA 1RU4A 2VJJA 1OOCA 1H80A 4U49A 4XOPA 3TH0A 1KCCA 4XLCA 3GQAA 1EE6A 5JLVC 2J8KA 2QXZA 4MR0A 2QY1A 1IDKA 1KQ5A 1RWRA 3SZEA 3ML3A 2X6XA 2X3HA 2PYGA 3PSSA 2XT4A 1O8MA 1PXZA 1LLZA 1QRBA 2NSTA 4OPWA 2PYHA 1OFMA 2VBEA 2BSPA 1O8HA 3JX8A 1OFLA 4I84A 3H09A 4NK8A 4XMYA 4W8SA 5AMVA 1QA1A 2EWEA 4Z06A 3N90A 1OGMX 1PLUA 4PMHA 3WWGA 3B90A 2INVA 1O8KA 3FY3A 1TYVA 2VFOA 2O04A 2INUA 4JRAC 4YDTA 3AK5A 1EZGA 3PSZA 4XOTA 4YZQA 1BN8A 4YFOA 1CLWA 3GQ8A 1L1IA 4URRA 1O8IA 2BM4A 4AVZA
chains in the Genus database with same CATH topology
4OJ6A 2BM6A 3RIQA 5JLVC 1QA2A 3BH6B 1K8FA 1KQ5A 4OJ5A 3SZEA 2YUHA 3ML3A 1WXRA 4OJPA 1TYWA 2XC1A 1QRBA 1TYUA 4OPWA 3SYJA 3LJYA 3N6ZA 1QRCA 1TSPA 1TYXA 2J8IA 2VFPA 3H09A 2W7ZA 3JX8A 4OJOA 1QA1A 2V5IA 3N90A 1HF2A 3PETA 4V02C 5JMCB 4OJLA 2BX6A 2BM5A 2VFQA 1K4ZA 2B0RA 1TYVA 3LYCA 2VFOA 1QQ1A 2VFMA 2F3LA 4KH3A 4JRAC 2BM7A 3AK5A 2G0YA 4OM9A 2IOUG 3P4GA 1QA3A 1CLWA 3TH0A 3BH7B 1DABA 2BM4A 2VFNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RIQ A;  1QA2 A;  3SZE A;  3ML3 A;  1WXR A;  1TYW A;  2XC1 A;  1QRB A;  1TYU A;  3SYJ A;  1TSP A;  1QRC A;  1TYX A;  2VFP A;  3H09 A;  1QA1 A;  2V5I A;  2VFQ A;  1TYV A;  2VFO A;  2VFM A;  1QQ1 A;  4KH3 A;  3AK5 A;  4OM9 A;  2IOU G;  1QA3 A;  1CLW A;  3TH0 A;  1DAB A;  2VFN A; 
#chains in the Genus database with same CATH topology
 3NB2 A;  2XTX A;  1QA2 A;  1BHE A;  2X85 A;  1OGO X;  4XL9 A;  4Z03 A;  4Z05 A;  2YUH A;  4YEI A;  4OJP A;  4XR6 A;  4XNF A;  2XC1 A;  3GQ9 A;  4XKW A;  2QYU A;  4YZX A;  3VMV A;  2UVE A;  1O8F A;  3B4N A;  1TYX A;  4XM3 A;  1EA0 A;  2VFP A;  1XG2 A;  2XT2 A;  2W7Z A;  1AIR A;  4OJO A;  1OFD A;  4YZ0 A;  1NHC A;  1JTA A;  3SQV A;  2O1D A;  4XLH A;  1KCD A;  2VFQ A;  2BM5 A;  2X6Y A;  4XQF A;  2NTB A;  2B0R A;  3LYC A;  1QQ1 A;  2VFM A;  3UW0 A;  1GQ8 A;  2F3L A;  2ODL A;  4KH3 A;  4XOR A;  5C1C A;  2PEC A;  2IOU G;  1X0C A;  3NAW A;  1QCX A;  3GRH A;  5DNS A;  1DAB A;  2NT6 A;  2NZM A;  4OJL A;  1JRG A;  2NT9 A;  2NSP A;  2O6W A;  2VFN A;  4OJ6 A;  3GQ7 A;  3EQO A;  2O17 A;  4OZY A;  4XN0 A;  4OJ5 A;  1HG8 A;  1OFE A;  3LMW A;  4W8R A;  4XLF A;  1TYW A;  2QZA A;  2XTW A;  4XON A;  3LJY A;  3N6Z A;  2Z8G A;  2VBM A;  1IB4 A;  2V5I A;  1VBL A;  1DBO A;  1O8J A;  2O0W A;  3PET A;  2VBK A;  4XKV A;  4XLE A;  4YEJ A;  2NTP A;  4OZZ A;  3T9G A;  4YZA A;  3VST A;  4W8Q A;  4YEL A;  2G0Y A;  3JUR A;  3P4G A;  1QA3 A;  1O8D A;  3BH7 B;  1RMG A;  1DBG A;  1O88 A;  1LM1 A;  4U4B A;  4YCQ A;  2BM6 A;  3RIQ A;  3VMW A;  5C1E A;  3EQN A;  3B8Y A;  4EW9 A;  1KTW A;  1O8G A;  1K8F A;  1LLW A;  3BH6 B;  3DU1 X;  3ZPP A;  3ZSC A;  1CZF A;  2NTQ A;  4C2L A;  1WXR A;  3VSU A;  1TYU A;  3SYJ A;  1QRC A;  1O8E A;  1TSP A;  2J8I A;  1IA5 A;  2VJI A;  4XN3 A;  4W8T A;  1HF2 A;  1IDJ A;  2QX3 A;  4V02 C;  4YC5 A;  3SUC A;  5JMC B;  2BX6 A;  1QJV A;  1K4Z A;  1O8L A;  2XTY A;  1K5C A;  2O0V A;  1PE9 A;  4HWV A;  2IQ7 A;  4XLA A;  3VSV A;  2BM7 A;  2UVF A;  3KRG A;  1WMR A;  4MXN A;  4NK6 A;  4OM9 A;  3SY2 A;  2X6W A;  1RU4 A;  2VJJ A;  1OOC A;  1H80 A;  4U49 A;  4XOP A;  3TH0 A;  1KCC A;  4XLC A;  3GQA A;  1EE6 A;  5JLV C;  2J8K A;  2QXZ A;  4MR0 A;  2QY1 A;  1IDK A;  1KQ5 A;  1RWR A;  3SZE A;  3ML3 A;  2X6X A;  2X3H A;  2PYG A;  3PSS A;  2XT4 A;  1O8M A;  1PXZ A;  1LLZ A;  1QRB A;  2NST A;  4OPW A;  2PYH A;  1OFM A;  2VBE A;  2BSP A;  1O8H A;  3JX8 A;  1OFL A;  4I84 A;  3H09 A;  4NK8 A;  4XMY A;  4W8S A;  5AMV A;  1QA1 A;  2EWE A;  4Z06 A;  3N90 A;  1OGM X;  1PLU A;  4PMH A;  3WWG A;  3B90 A;  2INV A;  1O8K A;  3FY3 A;  1TYV A;  2VFO A;  2O04 A;  2INU A;  4JRA C;  4YDT A;  3AK5 A;  1EZG A;  3PSZ A;  4XOT A;  4YZQ A;  1BN8 A;  4YFO A;  1CLW A;  3GQ8 A;  1L1I A;  4URR A;  1O8I A;  2BM4 A;  4AVZ A; 
#chains in the Genus database with same CATH homology
 4OJ6 A;  2BM6 A;  3RIQ A;  5JLV C;  1QA2 A;  3BH6 B;  1K8F A;  1KQ5 A;  4OJ5 A;  3SZE A;  2YUH A;  3ML3 A;  1WXR A;  4OJP A;  1TYW A;  2XC1 A;  1QRB A;  1TYU A;  4OPW A;  3SYJ A;  3LJY A;  3N6Z A;  1QRC A;  1TSP A;  1TYX A;  2J8I A;  2VFP A;  3H09 A;  2W7Z A;  3JX8 A;  4OJO A;  1QA1 A;  2V5I A;  3N90 A;  1HF2 A;  3PET A;  4V02 C;  5JMC B;  4OJL A;  2BX6 A;  2BM5 A;  2VFQ A;  1K4Z A;  2B0R A;  1TYV A;  3LYC A;  2VFO A;  1QQ1 A;  2VFM A;  2F3L A;  4KH3 A;  4JRA C;  2BM7 A;  3AK5 A;  2G0Y A;  4OM9 A;  2IOU G;  3P4G A;  1QA3 A;  1CLW A;  3TH0 A;  3BH7 B;  1DAB A;  2BM4 A;  2VFN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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