1TYVA

Structure of tailspike-protein
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
554
structure length
542
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral adhesion protein
molecule keywords TAILSPIKE PROTEIN
total genus 188
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1996-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tyvA00
1QA2A 1TYWA 1DABA 4KH3A 1TYVA 1TSPA 3ML3A 1QRCA 4OM9A 1TYXA 1QA3A 3SZEA 1QRBA 2VFOA 2XC1A 3SYJA 3AK5A 2VFNA 1TYUA 2V5IA 2VFMA 1CLWA 2IOUG 3TH0A 2VFQA 1QQ1A 3H09A 2VFPA 1QA1A 3RIQA 1WXRA
chains in the Genus database with same CATH superfamily
4OZYA 1TYWA 3KRGA 1DABA 1QA2A 1QJVA 1TYVA 2XTYA 4KH3A 1L1IA 2QX3A 1O88A 3B90A 4YCQA 1O8MA 2X6YA 3GQ8A 4XLHA 3B4NA 2NSTA 4YC5A 1K8FA 1DBGA 4U4BA 3BH7B 4XR6A 4XONA 3UW0A 4AVZA 4XLFA 2INUA 2NT9A 1KCCA 3N6ZA 3AK5A 3GQ7A 1WMRA 2XTXA 3T9GA 1IB4A 1IDJA 2PECA 5AMVA 4Z03A 1CLWA 1O8LA 3VSVA 1JTAA 2Z8GA 3H09A 5JLVC 3FY3A 2VFPA 2XT4A 3GQAA 4HWVA 2VBKA 1O8KA 3VMWA 1VBLA 2X6WA 1O8FA 4OJOA 2F3LA 1K4ZA 3ZPPA 2BX6A 3VSUA 4W8RA 1H80A 1OGMX 2UVEA 3ML3A 1O8EA 2VJIA 1OFEA 4JRAC 4W8SA 5C1CA 1LLZA 3GQ9A 1O8IA 4YDTA 3N90A 4XORA 2QY1A 2O1DA 2VBMA 2O04A 2INVA 4W8TA 4Z05A 1OOCA 1GQ8A 4XNFA 3PETA 1RWRA 1EA0A 1IDKA 2NT6A 1KCDA 3JX8A 2V5IA 3VMVA 4XLCA 2QYUA 2IOUG 2VFQA 1EE6A 2UVFA 4NK8A 1QA1A 2NSPA 2O17A 1EZGA 1KTWA 4W8QA 2W7ZA 1RMGA 3NAWA 2X3HA 4YZAA 4XLAA 4C2LA 3SY2A 5JMCB 1K5CA 2NTPA 4YZXA 1QCXA 1X0CA 2EWEA 5DNSA 1TSPA 4OJPA 3NB2A 4YZQA 1CZFA 1BHEA 1PXZA 3DU1X 3LJYA 4XQFA 3SZEA 1XG2A 3GRHA 1PLUA 1QRBA 4XN3A 4PMHA 2QXZA 4OJ5A 2VFOA 3P4GA 4XOTA 2VJJA 2J8KA 1BN8A 1HF2A 4I84A 2X6XA 3SYJA 1IA5A 1O8HA 2VFNA 2YUHA 1TYUA 2VFMA 1OFDA 4OPWA 1LM1A 2XT2A 4XN0A 2J8IA 4MXNA 5C1EA 2QZAA 2ODLA 3BH6B 4YZ0A 4V02C 3VSTA 1HG8A 2G0YA 4XKVA 3SQVA 4U49A 1OFMA 1AIRA 2NTBA 2O0VA 3WWGA 1NHCA 3RIQA 1OFLA 3PSSA 1O8JA 3EQOA 1QRCA 3LMWA 1O8DA 3PSZA 2BM7A 2PYGA 4OM9A 1TYXA 4NK6A 2O0WA 3ZSCA 2B0RA 1QA3A 2BM5A 3LYCA 1O8GA 4YELA 4XLEA 3SUCA 4XKWA 4XMYA 4MR0A 2X85A 4XOPA 4URRA 2XC1A 2BM6A 4YEJA 4EW9A 1OGOX 2NTQA 1DBOA 1JRGA 2BSPA 3JURA 2IQ7A 4OJ6A 3TH0A 3B8YA 1PE9A 1QQ1A 4YEIA 3EQNA 4XM3A 2BM4A 4OJLA 1KQ5A 1LLWA 2O6WA 1RU4A 4Z06A 2NZMA 4XL9A 2PYHA 2VBEA 2XTWA 4YFOA 1WXRA 4OZZA
chains in the Genus database with same CATH topology
1QA2A 1TYWA 1DABA 4KH3A 1TYVA 1TSPA 3ML3A 1QRCA 4OJPA 4JRAC 2BM7A 4OM9A 1TYXA 3N90A 3LJYA 2B0RA 1QA3A 2BM5A 1K8FA 3LYCA 3SZEA 3BH7B 1QRBA 4OJ5A 2VFOA 3P4GA 3PETA 1HF2A 2XC1A 3N6ZA 3SYJA 2BM6A 3AK5A 3RIQA 2YUHA 2VFNA 3JX8A 1TYUA 2V5IA 2VFMA 1CLWA 4OPWA 4OJ6A 2IOUG 3TH0A 2VFQA 1QQ1A 2J8IA 3H09A 5JLVC 2VFPA 2BM4A 3BH6B 4V02C 4OJLA 1KQ5A 1QA1A 2G0YA 2W7ZA 4OJOA 5JMCB 2F3LA 1K4ZA 1WXRA 2BX6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QA2 A;  1TYW A;  1DAB A;  4KH3 A;  1TYV A;  1TSP A;  3ML3 A;  1QRC A;  4OM9 A;  1TYX A;  1QA3 A;  3SZE A;  1QRB A;  2VFO A;  2XC1 A;  3SYJ A;  3AK5 A;  2VFN A;  1TYU A;  2V5I A;  2VFM A;  1CLW A;  2IOU G;  3TH0 A;  2VFQ A;  1QQ1 A;  3H09 A;  2VFP A;  1QA1 A;  3RIQ A;  1WXR A; 
#chains in the Genus database with same CATH topology
 4OZY A;  1TYW A;  3KRG A;  1DAB A;  1QA2 A;  1QJV A;  1TYV A;  2XTY A;  4KH3 A;  1L1I A;  2QX3 A;  1O88 A;  3B90 A;  4YCQ A;  1O8M A;  2X6Y A;  3GQ8 A;  4XLH A;  3B4N A;  2NST A;  4YC5 A;  1K8F A;  1DBG A;  4U4B A;  3BH7 B;  4XR6 A;  4XON A;  3UW0 A;  4AVZ A;  4XLF A;  2INU A;  2NT9 A;  1KCC A;  3N6Z A;  3AK5 A;  3GQ7 A;  1WMR A;  2XTX A;  3T9G A;  1IB4 A;  1IDJ A;  2PEC A;  5AMV A;  4Z03 A;  1CLW A;  1O8L A;  3VSV A;  1JTA A;  2Z8G A;  3H09 A;  5JLV C;  3FY3 A;  2VFP A;  2XT4 A;  3GQA A;  4HWV A;  2VBK A;  1O8K A;  3VMW A;  1VBL A;  2X6W A;  1O8F A;  4OJO A;  2F3L A;  1K4Z A;  3ZPP A;  2BX6 A;  3VSU A;  4W8R A;  1H80 A;  1OGM X;  2UVE A;  3ML3 A;  1O8E A;  2VJI A;  1OFE A;  4JRA C;  4W8S A;  5C1C A;  1LLZ A;  3GQ9 A;  1O8I A;  4YDT A;  3N90 A;  4XOR A;  2QY1 A;  2O1D A;  2VBM A;  2O04 A;  2INV A;  4W8T A;  4Z05 A;  1OOC A;  1GQ8 A;  4XNF A;  3PET A;  1RWR A;  1EA0 A;  1IDK A;  2NT6 A;  1KCD A;  3JX8 A;  2V5I A;  3VMV A;  4XLC A;  2QYU A;  2IOU G;  2VFQ A;  1EE6 A;  2UVF A;  4NK8 A;  1QA1 A;  2NSP A;  2O17 A;  1EZG A;  1KTW A;  4W8Q A;  2W7Z A;  1RMG A;  3NAW A;  2X3H A;  4YZA A;  4XLA A;  4C2L A;  3SY2 A;  5JMC B;  1K5C A;  2NTP A;  4YZX A;  1QCX A;  1X0C A;  2EWE A;  5DNS A;  1TSP A;  4OJP A;  3NB2 A;  4YZQ A;  1CZF A;  1BHE A;  1PXZ A;  3DU1 X;  3LJY A;  4XQF A;  3SZE A;  1XG2 A;  3GRH A;  1PLU A;  1QRB A;  4XN3 A;  4PMH A;  2QXZ A;  4OJ5 A;  2VFO A;  3P4G A;  4XOT A;  2VJJ A;  2J8K A;  1BN8 A;  1HF2 A;  4I84 A;  2X6X A;  3SYJ A;  1IA5 A;  1O8H A;  2VFN A;  2YUH A;  1TYU A;  2VFM A;  1OFD A;  4OPW A;  1LM1 A;  2XT2 A;  4XN0 A;  2J8I A;  4MXN A;  5C1E A;  2QZA A;  2ODL A;  3BH6 B;  4YZ0 A;  4V02 C;  3VST A;  1HG8 A;  2G0Y A;  4XKV A;  3SQV A;  4U49 A;  1OFM A;  1AIR A;  2NTB A;  2O0V A;  3WWG A;  1NHC A;  3RIQ A;  1OFL A;  3PSS A;  1O8J A;  3EQO A;  1QRC A;  3LMW A;  1O8D A;  3PSZ A;  2BM7 A;  2PYG A;  4OM9 A;  1TYX A;  4NK6 A;  2O0W A;  3ZSC A;  2B0R A;  1QA3 A;  2BM5 A;  3LYC A;  1O8G A;  4YEL A;  4XLE A;  3SUC A;  4XKW A;  4XMY A;  4MR0 A;  2X85 A;  4XOP A;  4URR A;  2XC1 A;  2BM6 A;  4YEJ A;  4EW9 A;  1OGO X;  2NTQ A;  1DBO A;  1JRG A;  2BSP A;  3JUR A;  2IQ7 A;  4OJ6 A;  3TH0 A;  3B8Y A;  1PE9 A;  1QQ1 A;  4YEI A;  3EQN A;  4XM3 A;  2BM4 A;  4OJL A;  1KQ5 A;  1LLW A;  2O6W A;  1RU4 A;  4Z06 A;  2NZM A;  4XL9 A;  2PYH A;  2VBE A;  2XTW A;  4YFO A;  1WXR A;  4OZZ A; 
#chains in the Genus database with same CATH homology
 1QA2 A;  1TYW A;  1DAB A;  4KH3 A;  1TYV A;  1TSP A;  3ML3 A;  1QRC A;  4OJP A;  4JRA C;  2BM7 A;  4OM9 A;  1TYX A;  3N90 A;  3LJY A;  2B0R A;  1QA3 A;  2BM5 A;  1K8F A;  3LYC A;  3SZE A;  3BH7 B;  1QRB A;  4OJ5 A;  2VFO A;  3P4G A;  3PET A;  1HF2 A;  2XC1 A;  3N6Z A;  3SYJ A;  2BM6 A;  3AK5 A;  3RIQ A;  2YUH A;  2VFN A;  3JX8 A;  1TYU A;  2V5I A;  2VFM A;  1CLW A;  4OPW A;  4OJ6 A;  2IOU G;  3TH0 A;  2VFQ A;  1QQ1 A;  2J8I A;  3H09 A;  5JLV C;  2VFP A;  2BM4 A;  3BH6 B;  4V02 C;  4OJL A;  1KQ5 A;  1QA1 A;  2G0Y A;  2W7Z A;  4OJO A;  5JMC B;  2F3L A;  1K4Z A;  1WXR A;  2BX6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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