1TYVA

Structure of tailspike-protein
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
554
structure length
542
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral adhesion protein
molecule keywords TAILSPIKE PROTEIN
total genus 188
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1996-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tyvA00
3TH0A 2VFMA 1QQ1A 1QA1A 1QA2A 3RIQA 4OM9A 1QRCA 1CLWA 1TYUA 3AK5A 1TSPA 1QA3A 3SZEA 2VFPA 1QRBA 2VFOA 3SYJA 4KH3A 2VFQA 1TYXA 2XC1A 2V5IA 1DABA 1WXRA 1TYWA 3H09A 2VFNA 2IOUG 3ML3A 1TYVA
chains in the Genus database with same CATH superfamily
4XM3A 1QA1A 2NTPA 5JLVC 1WMRA 3B8YA 3PETA 3T9GA 1O8GA 4C2LA 3GQ8A 1L1IA 2NTQA 2NSTA 4XKWA 3EQNA 1O8IA 1LLZA 2B0RA 2VJIA 4MXNA 4XN0A 2PYHA 4YFOA 2XT4A 4YEJA 3VMVA 1IDJA 1OFEA 4OJOA 3B90A 3SYJA 3LJYA 1IA5A 2X85A 4KH3A 4XMYA 2QY1A 1OFMA 4URRA 1TYXA 1O88A 4W8QA 1OFDA 4XNFA 3DU1X 3VSVA 3P4GA 2ODLA 1WXRA 2QXZA 1JRGA 3JX8A 4W8RA 4XLHA 3WWGA 2O0VA 4YCQA 2XT2A 2F3LA 1EA0A 2UVFA 2BM7A 4YELA 2VFMA 1RU4A 5C1CA 3JURA 1LLWA 2Z8GA 4U4BA 4W8TA 4YC5A 2O6WA 2VJJA 2BM6A 1O8DA 4I84A 3BH6B 3GQAA 3ZPPA 4XLCA 1KCDA 2QYUA 4NK8A 4MR0A 2QZAA 1RWRA 3AK5A 2UVEA 2XTWA 1TSPA 4XLAA 4XQFA 3GQ7A 2J8IA 1LM1A 3SZEA 4Z03A 2XTYA 4Z06A 1PXZA 2YUHA 4Z05A 3ZSCA 1IDKA 2VBKA 2VFQA 2NTBA 2G0YA 3SY2A 1BHEA 1XG2A 3BH7B 1O8LA 1TYWA 4OZYA 1JTAA 2QX3A 2VBEA 2NT9A 4YZ0A 1OFLA 1OGMX 1VBLA 4XONA 1DBOA 2NT6A 4OPWA 1K5CA 4AVZA 1GQ8A 3PSSA 2NSPA 4W8SA 4XOTA 3VSTA 4HWVA 2O17A 1KTWA 1O8KA 4JRAC 2PECA 1RMGA 4OJ6A 4YDTA 1QCXA 4OM9A 3VMWA 4V02C 2EWEA 2INVA 4YEIA 1K8FA 4XR6A 1QRCA 3SQVA 4PMHA 3GRHA 1DBGA 1BN8A 3UW0A 1PE9A 2O1DA 1QA3A 1K4ZA 1AIRA 2VFPA 2VFOA 4XN3A 1IB4A 4XLEA 4XORA 3PSZA 1DABA 1EE6A 2X6XA 1HF2A 3KRGA 2INUA 4NK6A 3B4NA 2BSPA 4EW9A 1KQ5A 2IOUG 3ML3A 4OJ5A 2J8KA 3NAWA 3TH0A 1QQ1A 3LYCA 3NB2A 1O8EA 1QA2A 5C1EA 4XL9A 3N6ZA 4XKVA 3RIQA 5JMCB 1O8HA 2XTXA 1H80A 4YZAA 4YZQA 1CZFA 2X6YA 3VSUA 1KCCA 4OZZA 1HG8A 1O8FA 2PYGA 1CLWA 2X3HA 1X0CA 1TYUA 1O8MA 3LMWA 4OJLA 2IQ7A 1PLUA 5AMVA 4XLFA 1NHCA 3EQOA 1QRBA 2BX6A 1O8JA 4OJPA 2VBMA 2XC1A 2V5IA 5DNSA 4YZXA 4XOPA 2NZMA 2O0WA 2BM4A 2BM5A 3SUCA 1OGOX 3H09A 3GQ9A 2W7ZA 4U49A 2VFNA 1OOCA 3N90A 3FY3A 1QJVA 2O04A 1EZGA 2X6WA 1TYVA
chains in the Genus database with same CATH topology
2BM7A 3TH0A 2VFMA 1QQ1A 3LYCA 1QA1A 1QA2A 5JLVC 4JRAC 2BM6A 3PETA 3N6ZA 4OJ6A 3RIQA 4OM9A 5JMCB 3BH6B 4V02C 1K8FA 1QRCA 4OJLA 1CLWA 1TYUA 3AK5A 1TSPA 1QA3A 1K4ZA 2B0RA 2J8IA 3SZEA 2VFPA 1QRBA 2VFOA 4OJOA 3SYJA 2BX6A 2YUHA 3LJYA 4OJPA 4KH3A 2VFQA 1TYXA 2G0YA 2XC1A 2V5IA 3BH7B 2BM4A 2BM5A 3P4GA 1DABA 1TYWA 3H09A 3JX8A 1WXRA 1HF2A 2W7ZA 2VFNA 1KQ5A 2F3LA 3N90A 2IOUG 4OPWA 3ML3A 4OJ5A 1TYVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TH0 A;  2VFM A;  1QQ1 A;  1QA1 A;  1QA2 A;  3RIQ A;  4OM9 A;  1QRC A;  1CLW A;  1TYU A;  3AK5 A;  1TSP A;  1QA3 A;  3SZE A;  2VFP A;  1QRB A;  2VFO A;  3SYJ A;  4KH3 A;  2VFQ A;  1TYX A;  2XC1 A;  2V5I A;  1DAB A;  1WXR A;  1TYW A;  3H09 A;  2VFN A;  2IOU G;  3ML3 A;  1TYV A; 
#chains in the Genus database with same CATH topology
 4XM3 A;  1QA1 A;  2NTP A;  5JLV C;  1WMR A;  3B8Y A;  3PET A;  3T9G A;  1O8G A;  4C2L A;  3GQ8 A;  1L1I A;  2NTQ A;  2NST A;  4XKW A;  3EQN A;  1O8I A;  1LLZ A;  2B0R A;  2VJI A;  4MXN A;  4XN0 A;  2PYH A;  4YFO A;  2XT4 A;  4YEJ A;  3VMV A;  1IDJ A;  1OFE A;  4OJO A;  3B90 A;  3SYJ A;  3LJY A;  1IA5 A;  2X85 A;  4KH3 A;  4XMY A;  2QY1 A;  1OFM A;  4URR A;  1TYX A;  1O88 A;  4W8Q A;  1OFD A;  4XNF A;  3DU1 X;  3VSV A;  3P4G A;  2ODL A;  1WXR A;  2QXZ A;  1JRG A;  3JX8 A;  4W8R A;  4XLH A;  3WWG A;  2O0V A;  4YCQ A;  2XT2 A;  2F3L A;  1EA0 A;  2UVF A;  2BM7 A;  4YEL A;  2VFM A;  1RU4 A;  5C1C A;  3JUR A;  1LLW A;  2Z8G A;  4U4B A;  4W8T A;  4YC5 A;  2O6W A;  2VJJ A;  2BM6 A;  1O8D A;  4I84 A;  3BH6 B;  3GQA A;  3ZPP A;  4XLC A;  1KCD A;  2QYU A;  4NK8 A;  4MR0 A;  2QZA A;  1RWR A;  3AK5 A;  2UVE A;  2XTW A;  1TSP A;  4XLA A;  4XQF A;  3GQ7 A;  2J8I A;  1LM1 A;  3SZE A;  4Z03 A;  2XTY A;  4Z06 A;  1PXZ A;  2YUH A;  4Z05 A;  3ZSC A;  1IDK A;  2VBK A;  2VFQ A;  2NTB A;  2G0Y A;  3SY2 A;  1BHE A;  1XG2 A;  3BH7 B;  1O8L A;  1TYW A;  4OZY A;  1JTA A;  2QX3 A;  2VBE A;  2NT9 A;  4YZ0 A;  1OFL A;  1OGM X;  1VBL A;  4XON A;  1DBO A;  2NT6 A;  4OPW A;  1K5C A;  4AVZ A;  1GQ8 A;  3PSS A;  2NSP A;  4W8S A;  4XOT A;  3VST A;  4HWV A;  2O17 A;  1KTW A;  1O8K A;  4JRA C;  2PEC A;  1RMG A;  4OJ6 A;  4YDT A;  1QCX A;  4OM9 A;  3VMW A;  4V02 C;  2EWE A;  2INV A;  4YEI A;  1K8F A;  4XR6 A;  1QRC A;  3SQV A;  4PMH A;  3GRH A;  1DBG A;  1BN8 A;  3UW0 A;  1PE9 A;  2O1D A;  1QA3 A;  1K4Z A;  1AIR A;  2VFP A;  2VFO A;  4XN3 A;  1IB4 A;  4XLE A;  4XOR A;  3PSZ A;  1DAB A;  1EE6 A;  2X6X A;  1HF2 A;  3KRG A;  2INU A;  4NK6 A;  3B4N A;  2BSP A;  4EW9 A;  1KQ5 A;  2IOU G;  3ML3 A;  4OJ5 A;  2J8K A;  3NAW A;  3TH0 A;  1QQ1 A;  3LYC A;  3NB2 A;  1O8E A;  1QA2 A;  5C1E A;  4XL9 A;  3N6Z A;  4XKV A;  3RIQ A;  5JMC B;  1O8H A;  2XTX A;  1H80 A;  4YZA A;  4YZQ A;  1CZF A;  2X6Y A;  3VSU A;  1KCC A;  4OZZ A;  1HG8 A;  1O8F A;  2PYG A;  1CLW A;  2X3H A;  1X0C A;  1TYU A;  1O8M A;  3LMW A;  4OJL A;  2IQ7 A;  1PLU A;  5AMV A;  4XLF A;  1NHC A;  3EQO A;  1QRB A;  2BX6 A;  1O8J A;  4OJP A;  2VBM A;  2XC1 A;  2V5I A;  5DNS A;  4YZX A;  4XOP A;  2NZM A;  2O0W A;  2BM4 A;  2BM5 A;  3SUC A;  1OGO X;  3H09 A;  3GQ9 A;  2W7Z A;  4U49 A;  2VFN A;  1OOC A;  3N90 A;  3FY3 A;  1QJV A;  2O04 A;  1EZG A;  2X6W A;  1TYV A; 
#chains in the Genus database with same CATH homology
 2BM7 A;  3TH0 A;  2VFM A;  1QQ1 A;  3LYC A;  1QA1 A;  1QA2 A;  5JLV C;  4JRA C;  2BM6 A;  3PET A;  3N6Z A;  4OJ6 A;  3RIQ A;  4OM9 A;  5JMC B;  3BH6 B;  4V02 C;  1K8F A;  1QRC A;  4OJL A;  1CLW A;  1TYU A;  3AK5 A;  1TSP A;  1QA3 A;  1K4Z A;  2B0R A;  2J8I A;  3SZE A;  2VFP A;  1QRB A;  2VFO A;  4OJO A;  3SYJ A;  2BX6 A;  2YUH A;  3LJY A;  4OJP A;  4KH3 A;  2VFQ A;  1TYX A;  2G0Y A;  2XC1 A;  2V5I A;  3BH7 B;  2BM4 A;  2BM5 A;  3P4G A;  1DAB A;  1TYW A;  3H09 A;  3JX8 A;  1WXR A;  1HF2 A;  2W7Z A;  2VFN A;  1KQ5 A;  2F3L A;  3N90 A;  2IOU G;  4OPW A;  3ML3 A;  4OJ5 A;  1TYV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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