1TYVA

Structure of tailspike-protein
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
554
structure length
542
Chain Sequence
b'YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral adhesion protein
total genus 188
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1996-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tyvA00
3SZEA 3ML3A 1QRBA 2VFMA 2VFOA 3H09A 2VFPA 3RIQA 2VFNA 1DABA 1QA1A 2XC1A 1WXRA 2IOUG 4KH3A 3SYJA 1TYUA 4OM9A 1CLWA 3TH0A 2V5IA 1QRCA 1TYXA 2VFQA 1QA2A 1TYVA 1TSPA 1TYWA 1QQ1A 1QA3A 3AK5A
chains in the Genus database with same CATH superfamily
1EA0A 1DBGA 4Z05A 2BM4A 3WWGA 3SY2A 2ODLA 2X85A 4YZAA 1LLZA 1OFEA 4YEJA 4XONA 1VBLA 4OZZA 4PMHA 2VFOA 3GQ9A 2XT4A 4AVZA 1O8DA 3RIQA 2UVEA 1GQ8A 5C1CA 2B0RA 3B90A 1O8HA 5JMCB 1IA5A 2BSPA 5AMVA 3EQNA 1PXZA 1LM1A 1WXRA 2IOUG 1PE9A 4OM9A 2VBMA 1KCDA 3T9GA 4XR6A 5DNSA 2PYHA 4YZXA 2V5IA 4OZYA 3LJYA 4I84A 4XOTA 2QXZA 1O8MA 4HWVA 1TYWA 3VSUA 1L1IA 1K8FA 1QQ1A 4YZ0A 2EWEA 3GRHA 1QA3A 3BH7B 1PLUA 4YCQA 3SZEA 1HG8A 1EE6A 4XKVA 1QCXA 3SUCA 1K4ZA 1HF2A 1JRGA 1CZFA 3LYCA 1IB4A 3N6ZA 3ZSCA 2YUHA 4W8SA 1DBOA 2VFPA 4W8TA 5C1EA 3UW0A 2W7ZA 2PYGA 3JURA 1O8IA 2VFNA 2BM7A 1X0CA 2X3HA 4XOPA 4OJ5A 4MR0A 4EW9A 2INUA 3GQAA 3B4NA 2XTWA 1TYUA 2IQ7A 2G0YA 3GQ7A 4XKWA 1OFLA 4OJOA 1WMRA 1CLWA 2NTBA 2VBEA 3ZPPA 2NTQA 1BHEA 2O1DA 2F3LA 2VJIA 1TYVA 1TSPA 2J8IA 2O0VA 4OJPA 4W8QA 1O8KA 3VMWA 4XQFA 4OPWA 2NTPA 4XN3A 2QX3A 1KQ5A 3PSZA 4YZQA 1O8EA 3ML3A 1QRBA 2VFMA 4XL9A 4YEIA 3GQ8A 2XT2A 1OGMX 2Z8GA 3H09A 2BX6A 1O8LA 2UVFA 4Z03A 1AIRA 1LLWA 4XLAA 4W8RA 3VSVA 1DABA 2INVA 1QA1A 4XLCA 3VSTA 2QY1A 4KH3A 1OFDA 2NT6A 4YC5A 3EQOA 3P4GA 3DU1X 1KCCA 4XMYA 4U49A 2O0WA 1O8JA 2BM5A 3PSSA 2O17A 2QYUA 1OGOX 4JRAC 4YDTA 3TH0A 1RU4A 1TYXA 3PETA 4MXNA 1O8GA 3KRGA 2VFQA 4YELA 1OFMA 2XTYA 3VMVA 5JLVC 2NSPA 1NHCA 2NSTA 3N90A 4V02C 4XNFA 3AK5A 4URRA 4NK6A 1KTWA 2J8KA 1H80A 4U4BA 1EZGA 4NK8A 2QZAA 1JTAA 1IDKA 3SQVA 1QJVA 2VJJA 4OJ6A 4XLEA 4YFOA 2X6XA 1RMGA 4Z06A 4XLFA 2PECA 1O88A 4OJLA 2X6YA 2NZMA 1BN8A 2NT9A 1K5CA 2X6WA 3NB2A 2XC1A 3SYJA 4XLHA 3LMWA 2O04A 1IDJA 2VBKA 4XM3A 3NAWA 4XORA 4XN0A 3BH6B 2O6WA 1XG2A 1QRCA 4C2LA 1OOCA 2BM6A 2XTXA 1QA2A 1O8FA 3B8YA 3FY3A 1RWRA 3JX8A
chains in the Genus database with same CATH topology
1KQ5A 3SZEA 3ML3A 1QRBA 2BM4A 2VFMA 1K4ZA 1HF2A 3LYCA 2VFOA 3N6ZA 4OJ6A 2YUHA 2BX6A 3H09A 2VFPA 3RIQA 5JMCB 2W7ZA 2B0RA 2VFNA 2BM7A 4OJLA 1DABA 1QA1A 4OJ5A 2XC1A 1WXRA 2IOUG 4KH3A 3SYJA 1TYUA 3P4GA 2G0YA 4OM9A 3AK5A 2BM5A 4OJOA 1CLWA 3TH0A 3BH6B 4JRAC 2V5IA 1QRCA 1TYXA 3LJYA 3PETA 2F3LA 2BM6A 1TYVA 2VFQA 1QA2A 1TSPA 1TYWA 2J8IA 4OJPA 1K8FA 1QQ1A 5JLVC 4OPWA 3N90A 1QA3A 4V02C 3BH7B 3JX8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SZE A;  3ML3 A;  1QRB A;  2VFM A;  2VFO A;  3H09 A;  2VFP A;  3RIQ A;  2VFN A;  1DAB A;  1QA1 A;  2XC1 A;  1WXR A;  2IOU G;  4KH3 A;  3SYJ A;  1TYU A;  4OM9 A;  1CLW A;  3TH0 A;  2V5I A;  1QRC A;  1TYX A;  2VFQ A;  1QA2 A;  1TYV A;  1TSP A;  1TYW A;  1QQ1 A;  1QA3 A;  3AK5 A; 
#chains in the Genus database with same CATH topology
 1EA0 A;  1DBG A;  4Z05 A;  2BM4 A;  3WWG A;  3SY2 A;  2ODL A;  2X85 A;  4YZA A;  1LLZ A;  1OFE A;  4YEJ A;  4XON A;  1VBL A;  4OZZ A;  4PMH A;  2VFO A;  3GQ9 A;  2XT4 A;  4AVZ A;  1O8D A;  3RIQ A;  2UVE A;  1GQ8 A;  5C1C A;  2B0R A;  3B90 A;  1O8H A;  5JMC B;  1IA5 A;  2BSP A;  5AMV A;  3EQN A;  1PXZ A;  1LM1 A;  1WXR A;  2IOU G;  1PE9 A;  4OM9 A;  2VBM A;  1KCD A;  3T9G A;  4XR6 A;  5DNS A;  2PYH A;  4YZX A;  2V5I A;  4OZY A;  3LJY A;  4I84 A;  4XOT A;  2QXZ A;  1O8M A;  4HWV A;  1TYW A;  3VSU A;  1L1I A;  1K8F A;  1QQ1 A;  4YZ0 A;  2EWE A;  3GRH A;  1QA3 A;  3BH7 B;  1PLU A;  4YCQ A;  3SZE A;  1HG8 A;  1EE6 A;  4XKV A;  1QCX A;  3SUC A;  1K4Z A;  1HF2 A;  1JRG A;  1CZF A;  3LYC A;  1IB4 A;  3N6Z A;  3ZSC A;  2YUH A;  4W8S A;  1DBO A;  2VFP A;  4W8T A;  5C1E A;  3UW0 A;  2W7Z A;  2PYG A;  3JUR A;  1O8I A;  2VFN A;  2BM7 A;  1X0C A;  2X3H A;  4XOP A;  4OJ5 A;  4MR0 A;  4EW9 A;  2INU A;  3GQA A;  3B4N A;  2XTW A;  1TYU A;  2IQ7 A;  2G0Y A;  3GQ7 A;  4XKW A;  1OFL A;  4OJO A;  1WMR A;  1CLW A;  2NTB A;  2VBE A;  3ZPP A;  2NTQ A;  1BHE A;  2O1D A;  2F3L A;  2VJI A;  1TYV A;  1TSP A;  2J8I A;  2O0V A;  4OJP A;  4W8Q A;  1O8K A;  3VMW A;  4XQF A;  4OPW A;  2NTP A;  4XN3 A;  2QX3 A;  1KQ5 A;  3PSZ A;  4YZQ A;  1O8E A;  3ML3 A;  1QRB A;  2VFM A;  4XL9 A;  4YEI A;  3GQ8 A;  2XT2 A;  1OGM X;  2Z8G A;  3H09 A;  2BX6 A;  1O8L A;  2UVF A;  4Z03 A;  1AIR A;  1LLW A;  4XLA A;  4W8R A;  3VSV A;  1DAB A;  2INV A;  1QA1 A;  4XLC A;  3VST A;  2QY1 A;  4KH3 A;  1OFD A;  2NT6 A;  4YC5 A;  3EQO A;  3P4G A;  3DU1 X;  1KCC A;  4XMY A;  4U49 A;  2O0W A;  1O8J A;  2BM5 A;  3PSS A;  2O17 A;  2QYU A;  1OGO X;  4JRA C;  4YDT A;  3TH0 A;  1RU4 A;  1TYX A;  3PET A;  4MXN A;  1O8G A;  3KRG A;  2VFQ A;  4YEL A;  1OFM A;  2XTY A;  3VMV A;  5JLV C;  2NSP A;  1NHC A;  2NST A;  3N90 A;  4V02 C;  4XNF A;  3AK5 A;  4URR A;  4NK6 A;  1KTW A;  2J8K A;  1H80 A;  4U4B A;  1EZG A;  4NK8 A;  2QZA A;  1JTA A;  1IDK A;  3SQV A;  1QJV A;  2VJJ A;  4OJ6 A;  4XLE A;  4YFO A;  2X6X A;  1RMG A;  4Z06 A;  4XLF A;  2PEC A;  1O88 A;  4OJL A;  2X6Y A;  2NZM A;  1BN8 A;  2NT9 A;  1K5C A;  2X6W A;  3NB2 A;  2XC1 A;  3SYJ A;  4XLH A;  3LMW A;  2O04 A;  1IDJ A;  2VBK A;  4XM3 A;  3NAW A;  4XOR A;  4XN0 A;  3BH6 B;  2O6W A;  1XG2 A;  1QRC A;  4C2L A;  1OOC A;  2BM6 A;  2XTX A;  1QA2 A;  1O8F A;  3B8Y A;  3FY3 A;  1RWR A;  3JX8 A; 
#chains in the Genus database with same CATH homology
 1KQ5 A;  3SZE A;  3ML3 A;  1QRB A;  2BM4 A;  2VFM A;  1K4Z A;  1HF2 A;  3LYC A;  2VFO A;  3N6Z A;  4OJ6 A;  2YUH A;  2BX6 A;  3H09 A;  2VFP A;  3RIQ A;  5JMC B;  2W7Z A;  2B0R A;  2VFN A;  2BM7 A;  4OJL A;  1DAB A;  1QA1 A;  4OJ5 A;  2XC1 A;  1WXR A;  2IOU G;  4KH3 A;  3SYJ A;  1TYU A;  3P4G A;  2G0Y A;  4OM9 A;  3AK5 A;  2BM5 A;  4OJO A;  1CLW A;  3TH0 A;  3BH6 B;  4JRA C;  2V5I A;  1QRC A;  1TYX A;  3LJY A;  3PET A;  2F3L A;  2BM6 A;  1TYV A;  2VFQ A;  1QA2 A;  1TSP A;  1TYW A;  2J8I A;  4OJP A;  1K8F A;  1QQ1 A;  5JLV C;  4OPW A;  3N90 A;  1QA3 A;  4V02 C;  3BH7 B;  3JX8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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