1TYWA

Structure of tailspike-protein
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral adhesion protein
total genus 192
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1996-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tywA00
3SYJA 3RIQA 1QA1A 4KH3A 2VFQA 1QA2A 1TYWA 2XC1A 2V5IA 1QA3A 1TYVA 2IOUG 2VFMA 3TH0A 1TYXA 3H09A 3AK5A 2VFNA 3ML3A 2VFOA 1QRBA 1CLWA 1DABA 1QRCA 3SZEA 1TSPA 1QQ1A 1WXRA 2VFPA 4OM9A 1TYUA
chains in the Genus database with same CATH superfamily
4OJLA 1HG8A 4XLHA 4XN0A 3BH6B 4OZYA 2VFQA 4XL9A 5JLVC 1O8JA 2B0RA 1O88A 2VBMA 4V02C 2QZAA 1PLUA 1EZGA 4U49A 2BM6A 2Z8GA 4XN3A 1O8EA 2X3HA 1PE9A 2O0WA 2PECA 3LMWA 3VSUA 4I84A 1O8GA 1OOCA 2VJIA 4XMYA 1DBGA 4XLEA 2VFOA 2O0VA 2NT9A 3EQOA 4OJPA 3PSSA 1QQ1A 1KCDA 3VMWA 3FY3A 2X6YA 1IB4A 1O8MA 3NAWA 3VSVA 1EA0A 4XONA 4OM9A 4XORA 1LM1A 4Z06A 3NB2A 2O6WA 1JRGA 2O1DA 1BN8A 3RIQA 5C1EA 1RWRA 1OFEA 4KH3A 2INVA 1QA2A 1TYWA 2J8IA 2NSPA 1K5CA 1O8DA 4XM3A 2QX3A 2V5IA 1JTAA 4XOTA 4NK8A 4Z03A 1L1IA 2VBKA 2IOUG 2VFMA 4XKVA 2O04A 4XLAA 3SY2A 2X6WA 1QJVA 3B8YA 4YCQA 2QY1A 2XTXA 2INUA 2VFNA 3AK5A 1OFLA 2IQ7A 2G0YA 3LYCA 1NHCA 1LLZA 2UVEA 4JRAC 1TSPA 4XKWA 4YZAA 3P4GA 2F3LA 1QCXA 2NTPA 3ZSCA 2BM4A 3GQ8A 3GRHA 4MR0A 2XT4A 4XOPA 2NTQA 1HF2A 4NK6A 3KRGA 4C2LA 1TYUA 2BM7A 3SYJA 1OFDA 3VSTA 4YDTA 2ODLA 1O8KA 3WWGA 5AMVA 2XC1A 3LJYA 4W8SA 4XQFA 2YUHA 2XTWA 4XNFA 2EWEA 3SQVA 1O8FA 1AIRA 1TYVA 4OPWA 2XTYA 3TH0A 1PXZA 2BX6A 2X85A 1TYXA 4W8RA 4YEJA 4Z05A 4W8QA 2PYHA 1VBLA 3B4NA 3ML3A 1XG2A 4U4BA 4OJOA 1X0CA 4HWVA 1DBOA 1KTWA 4W8TA 4YFOA 4YZXA 1IA5A 2NT6A 3N90A 3T9GA 3GQ7A 4XLFA 1DABA 5C1CA 1OGOX 5JMCB 1IDJA 3ZPPA 2VBEA 3VMVA 2NSTA 1IDKA 1O8IA 3B90A 4YELA 1OFMA 2NZMA 2VFPA 1O8LA 1K4ZA 4OZZA 4XLCA 4OJ5A 3JX8A 4XR6A 3N6ZA 3SUCA 1QA1A 2XT2A 1RU4A 2BM5A 4OJ6A 3PETA 1CZFA 4YEIA 4YZ0A 2VJJA 2QYUA 1QA3A 1K8FA 2W7ZA 3UW0A 2BSPA 4YZQA 4YC5A 2UVFA 1EE6A 2PYGA 3H09A 4AVZA 2NTBA 3JURA 2J8KA 5DNSA 3BH7B 1O8HA 1GQ8A 3DU1X 1BHEA 1H80A 1QRBA 1CLWA 2QXZA 1OGMX 1QRCA 4URRA 3SZEA 3PSZA 4PMHA 1RMGA 3GQAA 1LLWA 3GQ9A 4EW9A 1KQ5A 1WXRA 1KCCA 2X6XA 3EQNA 4MXNA 2O17A 1WMRA
chains in the Genus database with same CATH topology
2BM7A 4OJ5A 3JX8A 3SYJA 3N6ZA 4OJLA 3RIQA 1QA1A 4KH3A 3BH6B 5JLVC 2VFQA 2BM5A 1QA2A 4OJ6A 1TYWA 2J8IA 2B0RA 3PETA 4V02C 1K4ZA 2XC1A 3LJYA 2V5IA 2YUHA 1QA3A 1K8FA 2BM6A 2W7ZA 1TYVA 2IOUG 2VFMA 4OPWA 3TH0A 2BX6A 1TYXA 3H09A 3AK5A 2VFNA 3ML3A 3BH7B 4OJOA 2VFOA 3LYCA 2G0YA 1QRBA 1CLWA 3N90A 4OJPA 1QRCA 1DABA 3SZEA 4JRAC 1TSPA 5JMCB 1QQ1A 3P4GA 2F3LA 1KQ5A 2BM4A 1WXRA 1HF2A 2VFPA 4OM9A 1TYUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SYJ A;  3RIQ A;  1QA1 A;  4KH3 A;  2VFQ A;  1QA2 A;  1TYW A;  2XC1 A;  2V5I A;  1QA3 A;  1TYV A;  2IOU G;  2VFM A;  3TH0 A;  1TYX A;  3H09 A;  3AK5 A;  2VFN A;  3ML3 A;  2VFO A;  1QRB A;  1CLW A;  1DAB A;  1QRC A;  3SZE A;  1TSP A;  1QQ1 A;  1WXR A;  2VFP A;  4OM9 A;  1TYU A; 
#chains in the Genus database with same CATH topology
 4OJL A;  1HG8 A;  4XLH A;  4XN0 A;  3BH6 B;  4OZY A;  2VFQ A;  4XL9 A;  5JLV C;  1O8J A;  2B0R A;  1O88 A;  2VBM A;  4V02 C;  2QZA A;  1PLU A;  1EZG A;  4U49 A;  2BM6 A;  2Z8G A;  4XN3 A;  1O8E A;  2X3H A;  1PE9 A;  2O0W A;  2PEC A;  3LMW A;  3VSU A;  4I84 A;  1O8G A;  1OOC A;  2VJI A;  4XMY A;  1DBG A;  4XLE A;  2VFO A;  2O0V A;  2NT9 A;  3EQO A;  4OJP A;  3PSS A;  1QQ1 A;  1KCD A;  3VMW A;  3FY3 A;  2X6Y A;  1IB4 A;  1O8M A;  3NAW A;  3VSV A;  1EA0 A;  4XON A;  4OM9 A;  4XOR A;  1LM1 A;  4Z06 A;  3NB2 A;  2O6W A;  1JRG A;  2O1D A;  1BN8 A;  3RIQ A;  5C1E A;  1RWR A;  1OFE A;  4KH3 A;  2INV A;  1QA2 A;  1TYW A;  2J8I A;  2NSP A;  1K5C A;  1O8D A;  4XM3 A;  2QX3 A;  2V5I A;  1JTA A;  4XOT A;  4NK8 A;  4Z03 A;  1L1I A;  2VBK A;  2IOU G;  2VFM A;  4XKV A;  2O04 A;  4XLA A;  3SY2 A;  2X6W A;  1QJV A;  3B8Y A;  4YCQ A;  2QY1 A;  2XTX A;  2INU A;  2VFN A;  3AK5 A;  1OFL A;  2IQ7 A;  2G0Y A;  3LYC A;  1NHC A;  1LLZ A;  2UVE A;  4JRA C;  1TSP A;  4XKW A;  4YZA A;  3P4G A;  2F3L A;  1QCX A;  2NTP A;  3ZSC A;  2BM4 A;  3GQ8 A;  3GRH A;  4MR0 A;  2XT4 A;  4XOP A;  2NTQ A;  1HF2 A;  4NK6 A;  3KRG A;  4C2L A;  1TYU A;  2BM7 A;  3SYJ A;  1OFD A;  3VST A;  4YDT A;  2ODL A;  1O8K A;  3WWG A;  5AMV A;  2XC1 A;  3LJY A;  4W8S A;  4XQF A;  2YUH A;  2XTW A;  4XNF A;  2EWE A;  3SQV A;  1O8F A;  1AIR A;  1TYV A;  4OPW A;  2XTY A;  3TH0 A;  1PXZ A;  2BX6 A;  2X85 A;  1TYX A;  4W8R A;  4YEJ A;  4Z05 A;  4W8Q A;  2PYH A;  1VBL A;  3B4N A;  3ML3 A;  1XG2 A;  4U4B A;  4OJO A;  1X0C A;  4HWV A;  1DBO A;  1KTW A;  4W8T A;  4YFO A;  4YZX A;  1IA5 A;  2NT6 A;  3N90 A;  3T9G A;  3GQ7 A;  4XLF A;  1DAB A;  5C1C A;  1OGO X;  5JMC B;  1IDJ A;  3ZPP A;  2VBE A;  3VMV A;  2NST A;  1IDK A;  1O8I A;  3B90 A;  4YEL A;  1OFM A;  2NZM A;  2VFP A;  1O8L A;  1K4Z A;  4OZZ A;  4XLC A;  4OJ5 A;  3JX8 A;  4XR6 A;  3N6Z A;  3SUC A;  1QA1 A;  2XT2 A;  1RU4 A;  2BM5 A;  4OJ6 A;  3PET A;  1CZF A;  4YEI A;  4YZ0 A;  2VJJ A;  2QYU A;  1QA3 A;  1K8F A;  2W7Z A;  3UW0 A;  2BSP A;  4YZQ A;  4YC5 A;  2UVF A;  1EE6 A;  2PYG A;  3H09 A;  4AVZ A;  2NTB A;  3JUR A;  2J8K A;  5DNS A;  3BH7 B;  1O8H A;  1GQ8 A;  3DU1 X;  1BHE A;  1H80 A;  1QRB A;  1CLW A;  2QXZ A;  1OGM X;  1QRC A;  4URR A;  3SZE A;  3PSZ A;  4PMH A;  1RMG A;  3GQA A;  1LLW A;  3GQ9 A;  4EW9 A;  1KQ5 A;  1WXR A;  1KCC A;  2X6X A;  3EQN A;  4MXN A;  2O17 A;  1WMR A; 
#chains in the Genus database with same CATH homology
 2BM7 A;  4OJ5 A;  3JX8 A;  3SYJ A;  3N6Z A;  4OJL A;  3RIQ A;  1QA1 A;  4KH3 A;  3BH6 B;  5JLV C;  2VFQ A;  2BM5 A;  1QA2 A;  4OJ6 A;  1TYW A;  2J8I A;  2B0R A;  3PET A;  4V02 C;  1K4Z A;  2XC1 A;  3LJY A;  2V5I A;  2YUH A;  1QA3 A;  1K8F A;  2BM6 A;  2W7Z A;  1TYV A;  2IOU G;  2VFM A;  4OPW A;  3TH0 A;  2BX6 A;  1TYX A;  3H09 A;  3AK5 A;  2VFN A;  3ML3 A;  3BH7 B;  4OJO A;  2VFO A;  3LYC A;  2G0Y A;  1QRB A;  1CLW A;  3N90 A;  4OJP A;  1QRC A;  1DAB A;  3SZE A;  4JRA C;  1TSP A;  5JMC B;  1QQ1 A;  3P4G A;  2F3L A;  1KQ5 A;  2BM4 A;  1WXR A;  1HF2 A;  2VFP A;  4OM9 A;  1TYU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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