1TYWA

Structure of tailspike-protein
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral adhesion protein
molecule keywords TAILSPIKE PROTEIN
total genus 192
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1996-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tywA00
2IOUG 4KH3A 1QA2A 2VFPA 1TYVA 1CLWA 1QRBA 1TSPA 1TYXA 3RIQA 2V5IA 2VFOA 2VFNA 1TYUA 1TYWA 2XC1A 2VFQA 1WXRA 1DABA 3SYJA 4OM9A 1QQ1A 1QA1A 3TH0A 3AK5A 1QRCA 3SZEA 3ML3A 3H09A 2VFMA 1QA3A
chains in the Genus database with same CATH superfamily
2INVA 2PECA 4KH3A 4C2LA 2QX3A 3T9GA 3BH6B 4HWVA 4YELA 1QA2A 3GQ8A 5C1EA 1TYXA 1WMRA 3ZSCA 4I84A 3EQNA 3N90A 1L1IA 4YEIA 4W8RA 2XTWA 5JMCB 1IA5A 1AIRA 4OJPA 1K8FA 1H80A 2VBMA 4U49A 5DNSA 2O0VA 3B90A 1WXRA 4OJOA 3PETA 3SYJA 2BM6A 4OM9A 2O0WA 4YZAA 1JRGA 1QQ1A 2X6XA 1KQ5A 1O8HA 3N6ZA 3AK5A 1QRCA 2VJIA 3GQ9A 1O8GA 1OGMX 2W7ZA 2Z8GA 4XR6A 4Z06A 1O8KA 1GQ8A 4YZ0A 1K5CA 2X6YA 3SY2A 2VBKA 1QA3A 4XL9A 4OZYA 2IOUG 1BHEA 1OFEA 1O8EA 2NTQA 4OZZA 3VSUA 2BM7A 1O88A 2VFPA 4MR0A 1EZGA 1TSPA 3PSZA 4NK6A 1PLUA 5JLVC 2VFOA 2G0YA 2YUHA 2PYHA 3SUCA 4OJ6A 4EW9A 2UVEA 1TYUA 2QXZA 1XG2A 3UW0A 2NSPA 2O6WA 2BX6A 2NTPA 2O17A 4XORA 3GQAA 2NZMA 2J8IA 1RMGA 1JTAA 1RWRA 4XQFA 3ZPPA 2NSTA 1VBLA 1IB4A 4YCQA 1LM1A 1QA1A 3TH0A 2X6WA 3JURA 4OJLA 1RU4A 2BSPA 3DU1X 4W8TA 1OFMA 4AVZA 3GRHA 1O8JA 4XOTA 1PXZA 3LJYA 4YEJA 2XTXA 2BM4A 3EQOA 2B0RA 2XT4A 3LYCA 3FY3A 2VJJA 3RIQA 4XLHA 4OJ5A 4XONA 1IDJA 4OPWA 4Z03A 1K4ZA 4XLCA 4YC5A 4XM3A 2NT6A 4U4BA 1EE6A 2VFNA 2O04A 3JX8A 4JRAC 5AMVA 1EA0A 1KCDA 1O8FA 1X0CA 2XC1A 4NK8A 4W8SA 2INUA 2VFQA 4XLAA 4XKWA 4XLEA 2IQ7A 1DABA 2QZAA 3NB2A 1BN8A 3GQ7A 4XNFA 1O8LA 2ODLA 4XN3A 4V02C 3LMWA 4XKVA 1IDKA 4XN0A 4YDTA 3SZEA 1HG8A 1QJVA 2EWEA 2XT2A 1PE9A 1LLZA 3H09A 4YZQA 4Z05A 2VFMA 1O8IA 1OFLA 1CZFA 2PYGA 3VSTA 1LLWA 1TYVA 1CLWA 1QRBA 2J8KA 3B8YA 3VMVA 3VMWA 3VSVA 1O8DA 3WWGA 2V5IA 3P4GA 2QYUA 5C1CA 2X3HA 1OGOX 4W8QA 3SQVA 2F3LA 2UVFA 2O1DA 1TYWA 3B4NA 2NT9A 2QY1A 3KRGA 4URRA 1NHCA 2XTYA 1QCXA 4XLFA 3PSSA 4MXNA 3NAWA 3BH7B 1KCCA 4PMHA 4XOPA 2BM5A 1DBOA 1DBGA 1HF2A 4XMYA 1OOCA 4YFOA 2X85A 3ML3A 1OFDA 4YZXA 1KTWA 2VBEA 2NTBA 1O8MA
chains in the Genus database with same CATH topology
2IOUG 4KH3A 3BH6B 1QA3A 1QA2A 2BM7A 2VFPA 2BM4A 1TYVA 2B0RA 1CLWA 1QRBA 1TSPA 1TYXA 3LYCA 3RIQA 4OJ5A 4OPWA 2V5IA 1K4ZA 2G0YA 2VFOA 3N90A 3P4GA 5JLVC 2YUHA 2VFNA 2F3LA 3JX8A 4OJ6A 5JMCB 4JRAC 1TYUA 1TYWA 1K8FA 4OJPA 2XC1A 2BX6A 2VFQA 1WXRA 1DABA 4OJOA 2J8IA 3PETA 2BM6A 4OM9A 3SYJA 3BH7B 1QQ1A 1QA1A 1KQ5A 3TH0A 3N6ZA 2BM5A 1QRCA 4V02C 1HF2A 4OJLA 2W7ZA 3SZEA 3AK5A 3ML3A 3H09A 2VFMA 3LJYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IOU G;  4KH3 A;  1QA2 A;  2VFP A;  1TYV A;  1CLW A;  1QRB A;  1TSP A;  1TYX A;  3RIQ A;  2V5I A;  2VFO A;  2VFN A;  1TYU A;  1TYW A;  2XC1 A;  2VFQ A;  1WXR A;  1DAB A;  3SYJ A;  4OM9 A;  1QQ1 A;  1QA1 A;  3TH0 A;  3AK5 A;  1QRC A;  3SZE A;  3ML3 A;  3H09 A;  2VFM A;  1QA3 A; 
#chains in the Genus database with same CATH topology
 2INV A;  2PEC A;  4KH3 A;  4C2L A;  2QX3 A;  3T9G A;  3BH6 B;  4HWV A;  4YEL A;  1QA2 A;  3GQ8 A;  5C1E A;  1TYX A;  1WMR A;  3ZSC A;  4I84 A;  3EQN A;  3N90 A;  1L1I A;  4YEI A;  4W8R A;  2XTW A;  5JMC B;  1IA5 A;  1AIR A;  4OJP A;  1K8F A;  1H80 A;  2VBM A;  4U49 A;  5DNS A;  2O0V A;  3B90 A;  1WXR A;  4OJO A;  3PET A;  3SYJ A;  2BM6 A;  4OM9 A;  2O0W A;  4YZA A;  1JRG A;  1QQ1 A;  2X6X A;  1KQ5 A;  1O8H A;  3N6Z A;  3AK5 A;  1QRC A;  2VJI A;  3GQ9 A;  1O8G A;  1OGM X;  2W7Z A;  2Z8G A;  4XR6 A;  4Z06 A;  1O8K A;  1GQ8 A;  4YZ0 A;  1K5C A;  2X6Y A;  3SY2 A;  2VBK A;  1QA3 A;  4XL9 A;  4OZY A;  2IOU G;  1BHE A;  1OFE A;  1O8E A;  2NTQ A;  4OZZ A;  3VSU A;  2BM7 A;  1O88 A;  2VFP A;  4MR0 A;  1EZG A;  1TSP A;  3PSZ A;  4NK6 A;  1PLU A;  5JLV C;  2VFO A;  2G0Y A;  2YUH A;  2PYH A;  3SUC A;  4OJ6 A;  4EW9 A;  2UVE A;  1TYU A;  2QXZ A;  1XG2 A;  3UW0 A;  2NSP A;  2O6W A;  2BX6 A;  2NTP A;  2O17 A;  4XOR A;  3GQA A;  2NZM A;  2J8I A;  1RMG A;  1JTA A;  1RWR A;  4XQF A;  3ZPP A;  2NST A;  1VBL A;  1IB4 A;  4YCQ A;  1LM1 A;  1QA1 A;  3TH0 A;  2X6W A;  3JUR A;  4OJL A;  1RU4 A;  2BSP A;  3DU1 X;  4W8T A;  1OFM A;  4AVZ A;  3GRH A;  1O8J A;  4XOT A;  1PXZ A;  3LJY A;  4YEJ A;  2XTX A;  2BM4 A;  3EQO A;  2B0R A;  2XT4 A;  3LYC A;  3FY3 A;  2VJJ A;  3RIQ A;  4XLH A;  4OJ5 A;  4XON A;  1IDJ A;  4OPW A;  4Z03 A;  1K4Z A;  4XLC A;  4YC5 A;  4XM3 A;  2NT6 A;  4U4B A;  1EE6 A;  2VFN A;  2O04 A;  3JX8 A;  4JRA C;  5AMV A;  1EA0 A;  1KCD A;  1O8F A;  1X0C A;  2XC1 A;  4NK8 A;  4W8S A;  2INU A;  2VFQ A;  4XLA A;  4XKW A;  4XLE A;  2IQ7 A;  1DAB A;  2QZA A;  3NB2 A;  1BN8 A;  3GQ7 A;  4XNF A;  1O8L A;  2ODL A;  4XN3 A;  4V02 C;  3LMW A;  4XKV A;  1IDK A;  4XN0 A;  4YDT A;  3SZE A;  1HG8 A;  1QJV A;  2EWE A;  2XT2 A;  1PE9 A;  1LLZ A;  3H09 A;  4YZQ A;  4Z05 A;  2VFM A;  1O8I A;  1OFL A;  1CZF A;  2PYG A;  3VST A;  1LLW A;  1TYV A;  1CLW A;  1QRB A;  2J8K A;  3B8Y A;  3VMV A;  3VMW A;  3VSV A;  1O8D A;  3WWG A;  2V5I A;  3P4G A;  2QYU A;  5C1C A;  2X3H A;  1OGO X;  4W8Q A;  3SQV A;  2F3L A;  2UVF A;  2O1D A;  1TYW A;  3B4N A;  2NT9 A;  2QY1 A;  3KRG A;  4URR A;  1NHC A;  2XTY A;  1QCX A;  4XLF A;  3PSS A;  4MXN A;  3NAW A;  3BH7 B;  1KCC A;  4PMH A;  4XOP A;  2BM5 A;  1DBO A;  1DBG A;  1HF2 A;  4XMY A;  1OOC A;  4YFO A;  2X85 A;  3ML3 A;  1OFD A;  4YZX A;  1KTW A;  2VBE A;  2NTB A;  1O8M A; 
#chains in the Genus database with same CATH homology
 2IOU G;  4KH3 A;  3BH6 B;  1QA3 A;  1QA2 A;  2BM7 A;  2VFP A;  2BM4 A;  1TYV A;  2B0R A;  1CLW A;  1QRB A;  1TSP A;  1TYX A;  3LYC A;  3RIQ A;  4OJ5 A;  4OPW A;  2V5I A;  1K4Z A;  2G0Y A;  2VFO A;  3N90 A;  3P4G A;  5JLV C;  2YUH A;  2VFN A;  2F3L A;  3JX8 A;  4OJ6 A;  5JMC B;  4JRA C;  1TYU A;  1TYW A;  1K8F A;  4OJP A;  2XC1 A;  2BX6 A;  2VFQ A;  1WXR A;  1DAB A;  4OJO A;  2J8I A;  3PET A;  2BM6 A;  4OM9 A;  3SYJ A;  3BH7 B;  1QQ1 A;  1QA1 A;  1KQ5 A;  3TH0 A;  3N6Z A;  2BM5 A;  1QRC A;  4V02 C;  1HF2 A;  4OJL A;  2W7Z A;  3SZE A;  3AK5 A;  3ML3 A;  3H09 A;  2VFM A;  3LJY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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