1TZUA

T. maritima nusb, p212121
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
141
structure length
141
Chain Sequence
KTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIRGIKENLSMIDDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEKFEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords N utilization substance protein B homolog
publication title Crystal structures of the antitermination factor NusB from Thermotoga maritima and implications for RNA binding
pubmed doi rcsb
source organism Thermotoga maritima
total genus 53
structure length 141
sequence length 141
ec nomenclature
pdb deposition date 2004-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01029 NusB NusB family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.940.10 Mainly Alpha Orthogonal Bundle N-utilizing Substance Protein B Homolog; Chain A NusB-like 1tzuA00
1EY1A 3IMQA 1SQGA 1TZXA 3R2DA 3R2CA 1EYVA 4EYAA 1TZUA 1Q8CA 3D3CA 1TZVA 1TZWA 5LM7B 3D3BA 2JR0A 2YXLA 1SQFA 1TZTA
chains in the Genus database with same CATH superfamily
1EY1A 3IMQA 1SQGA 1TZXA 3R2DA 3R2CA 1EYVA 4EYAA 1TZUA 1Q8CA 3D3CA 1TZVA 1TZWA 5LM7B 3D3BA 2JR0A 2YXLA 1SQFA 1TZTA
chains in the Genus database with same CATH topology
1EY1A 3IMQA 1SQGA 1TZXA 3R2DA 3R2CA 1EYVA 4EYAA 1TZUA 1Q8CA 3D3CA 1TZVA 1TZWA 5LM7B 3D3BA 2JR0A 2YXLA 1SQFA 1TZTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EY1 A;  3IMQ A;  1SQG A;  1TZX A;  3R2D A;  3R2C A;  1EYV A;  4EYA A;  1TZU A;  1Q8C A;  3D3C A;  1TZV A;  1TZW A;  5LM7 B;  3D3B A;  2JR0 A;  2YXL A;  1SQF A;  1TZT A; 
#chains in the Genus database with same CATH topology
 1EY1 A;  3IMQ A;  1SQG A;  1TZX A;  3R2D A;  3R2C A;  1EYV A;  4EYA A;  1TZU A;  1Q8C A;  3D3C A;  1TZV A;  1TZW A;  5LM7 B;  3D3B A;  2JR0 A;  2YXL A;  1SQF A;  1TZT A; 
#chains in the Genus database with same CATH homology
 1EY1 A;  3IMQ A;  1SQG A;  1TZX A;  3R2D A;  3R2C A;  1EYV A;  4EYA A;  1TZU A;  1Q8C A;  3D3C A;  1TZV A;  1TZW A;  5LM7 B;  3D3B A;  2JR0 A;  2YXL A;  1SQF A;  1TZT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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