1TZWA

T. maritima nusb, p3121, form 2
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
142
structure length
142
Chain Sequence
MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIRGIKENLSMIDDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEKFEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords N utilization substance protein B homolog
publication title Crystal structures of the antitermination factor NusB from Thermotoga maritima and implications for RNA binding
pubmed doi rcsb
source organism Thermotoga maritima
total genus 61
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2004-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01029 NusB NusB family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.940.10 Mainly Alpha Orthogonal Bundle N-utilizing Substance Protein B Homolog; Chain A NusB-like 1tzwA00
1Q8CA 2YXLA 4EYAA 3D3BA 3IMQA 3R2DA 1SQFA 1TZTA 1SQGA 5LM7B 3R2CA 2JR0A 1EYVA 1TZWA 1EY1A 1TZVA 1TZXA 1TZUA 3D3CA
chains in the Genus database with same CATH superfamily
1Q8CA 2YXLA 4EYAA 3D3BA 3IMQA 3R2DA 1SQFA 1TZTA 1SQGA 5LM7B 3R2CA 2JR0A 1EYVA 1TZWA 1EY1A 1TZVA 1TZXA 1TZUA 3D3CA
chains in the Genus database with same CATH topology
1Q8CA 2YXLA 4EYAA 3D3BA 3IMQA 3R2DA 1SQFA 1TZTA 1SQGA 5LM7B 3R2CA 2JR0A 1EYVA 1TZWA 1EY1A 1TZVA 1TZXA 1TZUA 3D3CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q8C A;  2YXL A;  4EYA A;  3D3B A;  3IMQ A;  3R2D A;  1SQF A;  1TZT A;  1SQG A;  5LM7 B;  3R2C A;  2JR0 A;  1EYV A;  1TZW A;  1EY1 A;  1TZV A;  1TZX A;  1TZU A;  3D3C A; 
#chains in the Genus database with same CATH topology
 1Q8C A;  2YXL A;  4EYA A;  3D3B A;  3IMQ A;  3R2D A;  1SQF A;  1TZT A;  1SQG A;  5LM7 B;  3R2C A;  2JR0 A;  1EYV A;  1TZW A;  1EY1 A;  1TZV A;  1TZX A;  1TZU A;  3D3C A; 
#chains in the Genus database with same CATH homology
 1Q8C A;  2YXL A;  4EYA A;  3D3B A;  3IMQ A;  3R2D A;  1SQF A;  1TZT A;  1SQG A;  5LM7 B;  3R2C A;  2JR0 A;  1EYV A;  1TZW A;  1EY1 A;  1TZV A;  1TZX A;  1TZU A;  3D3C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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