1TZXA

T. maritima nusb, p3221
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
141
structure length
141
Chain Sequence
KTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIRGIKENLSMIDDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEKFEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords N utilization substance protein B homolog
publication title Crystal structures of the antitermination factor NusB from Thermotoga maritima and implications for RNA binding
pubmed doi rcsb
source organism Thermotoga maritima
total genus 60
structure length 141
sequence length 141
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01029 NusB NusB family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.940.10 Mainly Alpha Orthogonal Bundle N-utilizing Substance Protein B Homolog; Chain A NusB-like 1tzxA00
2YXLA 1TZVA 5LM7B 1EYVA 3R2CA 1EY1A 1TZWA 3R2DA 1SQFA 3D3CA 1TZXA 2JR0A 1Q8CA 1SQGA 1TZUA 1TZTA 4EYAA 3D3BA 3IMQA
chains in the Genus database with same CATH superfamily
2YXLA 1TZVA 5LM7B 1EYVA 3R2CA 1EY1A 1TZWA 3R2DA 1SQFA 3D3CA 1TZXA 2JR0A 1Q8CA 1SQGA 1TZUA 1TZTA 4EYAA 3D3BA 3IMQA
chains in the Genus database with same CATH topology
2YXLA 1TZVA 5LM7B 1EYVA 3R2CA 1EY1A 1TZWA 3R2DA 1SQFA 3D3CA 1TZXA 2JR0A 1Q8CA 1SQGA 1TZUA 1TZTA 4EYAA 3D3BA 3IMQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YXL A;  1TZV A;  5LM7 B;  1EYV A;  3R2C A;  1EY1 A;  1TZW A;  3R2D A;  1SQF A;  3D3C A;  1TZX A;  2JR0 A;  1Q8C A;  1SQG A;  1TZU A;  1TZT A;  4EYA A;  3D3B A;  3IMQ A; 
#chains in the Genus database with same CATH topology
 2YXL A;  1TZV A;  5LM7 B;  1EYV A;  3R2C A;  1EY1 A;  1TZW A;  3R2D A;  1SQF A;  3D3C A;  1TZX A;  2JR0 A;  1Q8C A;  1SQG A;  1TZU A;  1TZT A;  4EYA A;  3D3B A;  3IMQ A; 
#chains in the Genus database with same CATH homology
 2YXL A;  1TZV A;  5LM7 B;  1EYV A;  3R2C A;  1EY1 A;  1TZW A;  3R2D A;  1SQF A;  3D3C A;  1TZX A;  2JR0 A;  1Q8C A;  1SQG A;  1TZU A;  1TZT A;  4EYA A;  3D3B A;  3IMQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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