1U10A

Mepa, active form with zn in p1
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
251
structure length
232
Chain Sequence
ATPWQKITQPVPGSAQSIGSFSNGCIVGADTLPIQSEHYQVMRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPAGGRGHASHQTGLDVDIFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEIFSLIKLAAQDKDVTRIFVNPAIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPADSLECEDQPLPPSGDGCGAELQSWFELPPSCQALLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Penicillin-insensitive murein endopeptidase
publication title Peptidoglycan amidase MepA is a LAS metallopeptidase
pubmed doi rcsb
source organism Escherichia coli
total genus 63
structure length 232
sequence length 251
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.4.99.-:
pdb deposition date 2004-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03411 Peptidase_M74 Penicillin-insensitive murein endopeptidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.10 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Muramoyl-pentapeptide Carboxypeptidase; domain 2 1u10A00
4MUSA 3N1FA 3N1MB 3N1OA 3N1PB 2WFXA 3HO5H 4JIDA 4D0YA 4MURA 4NT9A 4MUQA 1U10A 2WG4A 4OAKA 3M1NA 3N1GA 3K7HB 4MUTA 3K7IB 3D1MA 4C4NA 3N1QA 3K7GB 1LBUA 3N1RA 3K7JB 2WFQA 4C4MA 2VO9A 4F78A 1TZPA 2WFRA 5HNMA 4OXDA 1VHHA 4OX5A 2WG3A 4OX3A 1R44A 2IBGE 3MXWA 4MPHA
chains in the Genus database with same CATH superfamily
1WC8A 2J3WB 2C0JB 3N1FA 3N1MB 4MUSA 3N1OA 2C0JA 2WFXA 3CUEB 3N1PB 3HO5H 4JIDA 4D0YA 4MURA 4NT9A 4MUQA 1U10A 3KXCC 2WG4A 2J3RB 4OAKA 3M1NA 2J3RA 3K7HB 1WC9A 3N1GA 1SZ7A 4MUTA 3D1MA 3K7IB 4C4NA 2CFHA 3N1QA 3K7GB 2J3WD 1LBUA 3N1RA 3K7JB 3CUED 2PWNA 2OSOA 2WFQA 2J3TB 2OSDA 2VO9A 1TZPA 2WFRA 4C4MA 4F78A 5HNMA 3KXCA 4OXDA 2J3TA 1VHHA 4OX5A 2WG3A 4OX3A 3NJCA 1R44A 2IBGE 3MXWA 2BJNA 2CFHC 4MPHA
chains in the Genus database with same CATH topology
4MUSA 3N1FA 3N1MB 3N1OA 3N1PB 2WFXA 3HO5H 4JIDA 4D0YA 4MURA 4NT9A 4MUQA 1U10A 2WG4A 4OAKA 3M1NA 3N1GA 3K7HB 4MUTA 3K7IB 3D1MA 4C4NA 3N1QA 3K7GB 1LBUA 3N1RA 3K7JB 2WFQA 4C4MA 2VO9A 4F78A 1TZPA 2WFRA 5HNMA 4OXDA 1VHHA 4OX5A 2WG3A 4OX3A 1R44A 2IBGE 3MXWA 4MPHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MUS A;  3N1F A;  3N1M B;  3N1O A;  3N1P B;  2WFX A;  3HO5 H;  4JID A;  4D0Y A;  4MUR A;  4NT9 A;  4MUQ A;  1U10 A;  2WG4 A;  4OAK A;  3M1N A;  3N1G A;  3K7H B;  4MUT A;  3K7I B;  3D1M A;  4C4N A;  3N1Q A;  3K7G B;  1LBU A;  3N1R A;  3K7J B;  2WFQ A;  4C4M A;  2VO9 A;  4F78 A;  1TZP A;  2WFR A;  5HNM A;  4OXD A;  1VHH A;  4OX5 A;  2WG3 A;  4OX3 A;  1R44 A;  2IBG E;  3MXW A;  4MPH A; 
#chains in the Genus database with same CATH topology
 1WC8 A;  2J3W B;  2C0J B;  3N1F A;  3N1M B;  4MUS A;  3N1O A;  2C0J A;  2WFX A;  3CUE B;  3N1P B;  3HO5 H;  4JID A;  4D0Y A;  4MUR A;  4NT9 A;  4MUQ A;  1U10 A;  3KXC C;  2WG4 A;  2J3R B;  4OAK A;  3M1N A;  2J3R A;  3K7H B;  1WC9 A;  3N1G A;  1SZ7 A;  4MUT A;  3D1M A;  3K7I B;  4C4N A;  2CFH A;  3N1Q A;  3K7G B;  2J3W D;  1LBU A;  3N1R A;  3K7J B;  3CUE D;  2PWN A;  2OSO A;  2WFQ A;  2J3T B;  2OSD A;  2VO9 A;  1TZP A;  2WFR A;  4C4M A;  4F78 A;  5HNM A;  3KXC A;  4OXD A;  2J3T A;  1VHH A;  4OX5 A;  2WG3 A;  4OX3 A;  3NJC A;  1R44 A;  2IBG E;  3MXW A;  2BJN A;  2CFH C;  4MPH A; 
#chains in the Genus database with same CATH homology
 4MUS A;  3N1F A;  3N1M B;  3N1O A;  3N1P B;  2WFX A;  3HO5 H;  4JID A;  4D0Y A;  4MUR A;  4NT9 A;  4MUQ A;  1U10 A;  2WG4 A;  4OAK A;  3M1N A;  3N1G A;  3K7H B;  4MUT A;  3K7I B;  3D1M A;  4C4N A;  3N1Q A;  3K7G B;  1LBU A;  3N1R A;  3K7J B;  2WFQ A;  4C4M A;  2VO9 A;  4F78 A;  1TZP A;  2WFR A;  5HNM A;  4OXD A;  1VHH A;  4OX5 A;  2WG3 A;  4OX3 A;  1R44 A;  2IBG E;  3MXW A;  4MPH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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