1U1VA

Structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79
Total Genus 73
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
278
structure length
278
Chain Sequence
MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase, lyase
molecule keywords Phenazine biosynthesis protein phzF
total genus 73
structure length 278
sequence length 278
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1vA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1vA01
4IK0A 2GKEA 3EDNA 1GQZA 1U0KA 2H9FA 1W62A 1U1XA 1XUAA 5IWEA 4IJZA 2AZPA 1TM0A 1SDJA 4J9WA 4Q2HA 1U1WA 1YM5A 2Q9JA 4LB0A 4DUNA 2PVZA 1S7JA 4JCIA 1U1VA 4JD7A 4JBDA 2PW0A 5H2YA 5H2GA 3FVEA 4JUUA 2GKJA 4K7XA 4Q60A 3G7KA 1XUBA 3EJXA 1W61A 1BWZA 3EKMA 4J9XA 1QYAA 4K7GB 2Q9HA 4K8LA 1T6KA 2OTNA 5HA4A 1QY9A 5M47A
chains in the Genus database with same CATH superfamily
2GKEA 2ZXRA 3ICJA 1GQZA 1U1XA 2YMAA 2AZPA 1TM0A 5ANPA 1YM5A 2Q9JA 4JCIA 4JD7A 3PW9A 2QB6A 2QB8A 3FVEA 2MPBA 4JUUA 1IR6A 3EKMA 4K7GB 1QYAA 5HA4A 1U0KA 2LT2A 4IJZA 2ZXPA 1SDJA 1U1WA 1K20A 4DUNA 1U1VA 3W5WA 5H2YA 3G7KA 1XUBA 4LG3A 4PY9A 2Q9HA 4OA3A 2KW7A 2H9FA 1XUAA 3DEVA 3PVHA 1I74A 2ZVFA 4J9WA 4Q2HA 4LB0A 2PVZA 3G98A 2KPTA 3PTJA 2ENXA 5H2GA 2GKJA 4Q60A 2HAWA 4GL6A 1WPPA 3EJXA 2EB0A 4K8LA 4J9XA 1T6KA 2OTNA 5M47A 4IK0A 4RPAA 4LS9A 3EDNA 2QB7A 1W62A 3WQZA 5IWEA 1K23A 1S7JA 4JBDA 2ZXOA 2IW4A 4K7XA 1W61A 1BWZA 1WPMA 3IGHX 2PW0A 1QY9A
chains in the Genus database with same CATH topology
2GKEA 2ZXRA 3ICJA 1GQZA 1U1XA 2YMAA 2AZPA 1TM0A 5ANPA 1YM5A 2Q9JA 4JCIA 4JD7A 3PW9A 2QB6A 2QB8A 3FVEA 2MPBA 4JUUA 1IR6A 3EKMA 4K7GB 1QYAA 5HA4A 1U0KA 2LT2A 4IJZA 2ZXPA 1SDJA 1U1WA 1K20A 4DUNA 1U1VA 3W5WA 5H2YA 3G7KA 1XUBA 4LG3A 4PY9A 2Q9HA 4OA3A 2KW7A 2H9FA 1XUAA 3DEVA 3PVHA 1I74A 2ZVFA 4J9WA 4Q2HA 4LB0A 2PVZA 3G98A 2KPTA 3PTJA 2ENXA 5H2GA 2GKJA 4Q60A 2HAWA 4GL6A 1WPPA 3EJXA 2EB0A 4K8LA 4J9XA 1T6KA 2OTNA 5M47A 4IK0A 4RPAA 4LS9A 3EDNA 2QB7A 1W62A 3WQZA 5IWEA 1K23A 1S7JA 4JBDA 2ZXOA 2IW4A 4K7XA 1W61A 1BWZA 1WPMA 3IGHX 2PW0A 1QY9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IK0 A;  2GKE A;  3EDN A;  1GQZ A;  1U0K A;  2H9F A;  1W62 A;  1U1X A;  1XUA A;  5IWE A;  4IJZ A;  2AZP A;  1TM0 A;  1SDJ A;  4J9W A;  4Q2H A;  1U1W A;  1YM5 A;  2Q9J A;  4LB0 A;  4DUN A;  2PVZ A;  1S7J A;  4JCI A;  1U1V A;  4JD7 A;  4JBD A;  2PW0 A;  5H2Y A;  5H2G A;  3FVE A;  4JUU A;  2GKJ A;  4K7X A;  4Q60 A;  3G7K A;  1XUB A;  3EJX A;  1W61 A;  1BWZ A;  3EKM A;  4J9X A;  1QYA A;  4K7G B;  2Q9H A;  4K8L A;  1T6K A;  2OTN A;  5HA4 A;  1QY9 A;  5M47 A; 
#chains in the Genus database with same CATH topology
 2GKE A;  2ZXR A;  3ICJ A;  1GQZ A;  1U1X A;  2YMA A;  2AZP A;  1TM0 A;  5ANP A;  1YM5 A;  2Q9J A;  4JCI A;  4JD7 A;  3PW9 A;  2QB6 A;  2QB8 A;  3FVE A;  2MPB A;  4JUU A;  1IR6 A;  3EKM A;  4K7G B;  1QYA A;  5HA4 A;  1U0K A;  2LT2 A;  4IJZ A;  2ZXP A;  1SDJ A;  1U1W A;  1K20 A;  4DUN A;  1U1V A;  3W5W A;  5H2Y A;  3G7K A;  1XUB A;  4LG3 A;  4PY9 A;  2Q9H A;  4OA3 A;  2KW7 A;  2H9F A;  1XUA A;  3DEV A;  3PVH A;  1I74 A;  2ZVF A;  4J9W A;  4Q2H A;  4LB0 A;  2PVZ A;  3G98 A;  2KPT A;  3PTJ A;  2ENX A;  5H2G A;  2GKJ A;  4Q60 A;  2HAW A;  4GL6 A;  1WPP A;  3EJX A;  2EB0 A;  4K8L A;  4J9X A;  1T6K A;  2OTN A;  5M47 A;  4IK0 A;  4RPA A;  4LS9 A;  3EDN A;  2QB7 A;  1W62 A;  3WQZ A;  5IWE A;  1K23 A;  1S7J A;  4JBD A;  2ZXO A;  2IW4 A;  4K7X A;  1W61 A;  1BWZ A;  1WPM A;  3IGH X;  2PW0 A;  1QY9 A; 
#chains in the Genus database with same CATH homology
 2GKE A;  2ZXR A;  3ICJ A;  1GQZ A;  1U1X A;  2YMA A;  2AZP A;  1TM0 A;  5ANP A;  1YM5 A;  2Q9J A;  4JCI A;  4JD7 A;  3PW9 A;  2QB6 A;  2QB8 A;  3FVE A;  2MPB A;  4JUU A;  1IR6 A;  3EKM A;  4K7G B;  1QYA A;  5HA4 A;  1U0K A;  2LT2 A;  4IJZ A;  2ZXP A;  1SDJ A;  1U1W A;  1K20 A;  4DUN A;  1U1V A;  3W5W A;  5H2Y A;  3G7K A;  1XUB A;  4LG3 A;  4PY9 A;  2Q9H A;  4OA3 A;  2KW7 A;  2H9F A;  1XUA A;  3DEV A;  3PVH A;  1I74 A;  2ZVF A;  4J9W A;  4Q2H A;  4LB0 A;  2PVZ A;  3G98 A;  2KPT A;  3PTJ A;  2ENX A;  5H2G A;  2GKJ A;  4Q60 A;  2HAW A;  4GL6 A;  1WPP A;  3EJX A;  2EB0 A;  4K8L A;  4J9X A;  1T6K A;  2OTN A;  5M47 A;  4IK0 A;  4RPA A;  4LS9 A;  3EDN A;  2QB7 A;  1W62 A;  3WQZ A;  5IWE A;  1K23 A;  1S7J A;  4JBD A;  2ZXO A;  2IW4 A;  4K7X A;  1W61 A;  1BWZ A;  1WPM A;  3IGH X;  2PW0 A;  1QY9 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...