1U1VA

Structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
278
structure length
278
Chain Sequence
MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase, lyase
molecule keywords Phenazine biosynthesis protein phzF
total genus 73
structure length 278
sequence length 278
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1vA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1vA01
1W62A 3EDNA 2Q9HA 4K8LA 4LB0A 4IK0A 4JUUA 1U1XA 4JD7A 1TM0A 3EKMA 2PW0A 2AZPA 5IWEA 1U1WA 2Q9JA 4J9WA 4J9XA 1U1VA 2PVZA 3EJXA 5HA4A 1BWZA 1W61A 1SDJA 1S7JA 1T6KA 1YM5A 2OTNA 3FVEA 5M47A 1QY9A 1XUBA 4K7XA 2GKEA 4Q2HA 4K7GB 4JBDA 3G7KA 1QYAA 1XUAA 4JCIA 5H2YA 5H2GA 4Q60A 4IJZA 2H9FA 1GQZA 1U0KA 2GKJA 4DUNA
chains in the Genus database with same CATH superfamily
1W62A 2Q9HA 2KPTA 4K8LA 5ANPA 2KW7A 4IK0A 2QB8A 1U1WA 3WQZA 5HA4A 2OTNA 1SDJA 4PY9A 2GKEA 2ZXRA 4K7GB 2MPBA 4OA3A 4JCIA 5H2GA 2ZXOA 2ENXA 3ICJA 3G98A 3PVHA 2LT2A 3IGHX 4JD7A 4RPAA 1I74A 2Q9JA 4J9XA 3EJXA 2YMAA 1W61A 1S7JA 1XUBA 4Q2HA 2ZVFA 3G7KA 1QYAA 1XUAA 4Q60A 4IJZA 3W5WA 1K23A 4LS9A 3EDNA 4JUUA 1U1XA 2PW0A 2AZPA 4J9WA 1BWZA 1YM5A 2ZXPA 3FVEA 4GL6A 1QY9A 2HAWA 1K20A 4JBDA 3PTJA 2QB6A 5H2YA 2IW4A 1U0KA 4DUNA 2QB7A 1WPMA 1WPPA 4LB0A 1TM0A 3EKMA 5IWEA 1U1VA 2PVZA 1T6KA 5M47A 4K7XA 4LG3A 3PW9A 3DEVA 2EB0A 1GQZA 2H9FA 2GKJA 1IR6A
chains in the Genus database with same CATH topology
1W62A 2Q9HA 2KPTA 4K8LA 5ANPA 2KW7A 4IK0A 2QB8A 1U1WA 3WQZA 5HA4A 2OTNA 1SDJA 4PY9A 2GKEA 2ZXRA 4K7GB 2MPBA 4OA3A 4JCIA 5H2GA 2ZXOA 2ENXA 3ICJA 3G98A 3PVHA 2LT2A 3IGHX 4JD7A 4RPAA 1I74A 2Q9JA 4J9XA 3EJXA 2YMAA 1W61A 1S7JA 1XUBA 4Q2HA 2ZVFA 3G7KA 1QYAA 1XUAA 4Q60A 4IJZA 3W5WA 1K23A 4LS9A 3EDNA 4JUUA 1U1XA 2PW0A 2AZPA 4J9WA 1BWZA 1YM5A 2ZXPA 3FVEA 4GL6A 1QY9A 2HAWA 1K20A 4JBDA 3PTJA 2QB6A 5H2YA 2IW4A 1U0KA 4DUNA 2QB7A 1WPMA 1WPPA 4LB0A 1TM0A 3EKMA 5IWEA 1U1VA 2PVZA 1T6KA 5M47A 4K7XA 4LG3A 3PW9A 3DEVA 2EB0A 1GQZA 2H9FA 2GKJA 1IR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W62 A;  3EDN A;  2Q9H A;  4K8L A;  4LB0 A;  4IK0 A;  4JUU A;  1U1X A;  4JD7 A;  1TM0 A;  3EKM A;  2PW0 A;  2AZP A;  5IWE A;  1U1W A;  2Q9J A;  4J9W A;  4J9X A;  1U1V A;  2PVZ A;  3EJX A;  5HA4 A;  1BWZ A;  1W61 A;  1SDJ A;  1S7J A;  1T6K A;  1YM5 A;  2OTN A;  3FVE A;  5M47 A;  1QY9 A;  1XUB A;  4K7X A;  2GKE A;  4Q2H A;  4K7G B;  4JBD A;  3G7K A;  1QYA A;  1XUA A;  4JCI A;  5H2Y A;  5H2G A;  4Q60 A;  4IJZ A;  2H9F A;  1GQZ A;  1U0K A;  2GKJ A;  4DUN A; 
#chains in the Genus database with same CATH topology
 1W62 A;  2Q9H A;  2KPT A;  4K8L A;  5ANP A;  2KW7 A;  4IK0 A;  2QB8 A;  1U1W A;  3WQZ A;  5HA4 A;  2OTN A;  1SDJ A;  4PY9 A;  2GKE A;  2ZXR A;  4K7G B;  2MPB A;  4OA3 A;  4JCI A;  5H2G A;  2ZXO A;  2ENX A;  3ICJ A;  3G98 A;  3PVH A;  2LT2 A;  3IGH X;  4JD7 A;  4RPA A;  1I74 A;  2Q9J A;  4J9X A;  3EJX A;  2YMA A;  1W61 A;  1S7J A;  1XUB A;  4Q2H A;  2ZVF A;  3G7K A;  1QYA A;  1XUA A;  4Q60 A;  4IJZ A;  3W5W A;  1K23 A;  4LS9 A;  3EDN A;  4JUU A;  1U1X A;  2PW0 A;  2AZP A;  4J9W A;  1BWZ A;  1YM5 A;  2ZXP A;  3FVE A;  4GL6 A;  1QY9 A;  2HAW A;  1K20 A;  4JBD A;  3PTJ A;  2QB6 A;  5H2Y A;  2IW4 A;  1U0K A;  4DUN A;  2QB7 A;  1WPM A;  1WPP A;  4LB0 A;  1TM0 A;  3EKM A;  5IWE A;  1U1V A;  2PVZ A;  1T6K A;  5M47 A;  4K7X A;  4LG3 A;  3PW9 A;  3DEV A;  2EB0 A;  1GQZ A;  2H9F A;  2GKJ A;  1IR6 A; 
#chains in the Genus database with same CATH homology
 1W62 A;  2Q9H A;  2KPT A;  4K8L A;  5ANP A;  2KW7 A;  4IK0 A;  2QB8 A;  1U1W A;  3WQZ A;  5HA4 A;  2OTN A;  1SDJ A;  4PY9 A;  2GKE A;  2ZXR A;  4K7G B;  2MPB A;  4OA3 A;  4JCI A;  5H2G A;  2ZXO A;  2ENX A;  3ICJ A;  3G98 A;  3PVH A;  2LT2 A;  3IGH X;  4JD7 A;  4RPA A;  1I74 A;  2Q9J A;  4J9X A;  3EJX A;  2YMA A;  1W61 A;  1S7J A;  1XUB A;  4Q2H A;  2ZVF A;  3G7K A;  1QYA A;  1XUA A;  4Q60 A;  4IJZ A;  3W5W A;  1K23 A;  4LS9 A;  3EDN A;  4JUU A;  1U1X A;  2PW0 A;  2AZP A;  4J9W A;  1BWZ A;  1YM5 A;  2ZXP A;  3FVE A;  4GL6 A;  1QY9 A;  2HAW A;  1K20 A;  4JBD A;  3PTJ A;  2QB6 A;  5H2Y A;  2IW4 A;  1U0K A;  4DUN A;  2QB7 A;  1WPM A;  1WPP A;  4LB0 A;  1TM0 A;  3EKM A;  5IWE A;  1U1V A;  2PVZ A;  1T6K A;  5M47 A;  4K7X A;  4LG3 A;  3PW9 A;  3DEV A;  2EB0 A;  1GQZ A;  2H9F A;  2GKJ A;  1IR6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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