1U1XA

Structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
278
structure length
278
Chain Sequence
MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase, lyase
molecule keywords Phenazine biosynthesis protein phzF
total genus 79
structure length 278
sequence length 278
chains with identical sequence B
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1xA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1xA01
4JD7A 1U1VA 5IWEA 5H2GA 4Q2HA 4JCIA 1TM0A 3G7KA 5HA4A 4J9WA 4IK0A 1W62A 1T6KA 1W61A 2PW0A 1S7JA 1SDJA 1U0KA 2PVZA 2Q9HA 4J9XA 4IJZA 3EJXA 2OTNA 2H9FA 1QYAA 1U1XA 1BWZA 4K8LA 4K7GB 4JBDA 3EDNA 3FVEA 4JUUA 2GKJA 1QY9A 2GKEA 5M47A 1XUAA 4K7XA 4DUNA 4LB0A 2Q9JA 1GQZA 2AZPA 5H2YA 3EKMA 1XUBA 4Q60A 1YM5A 1U1WA
chains in the Genus database with same CATH superfamily
5IWEA 1TM0A 1W62A 4LG3A 2ZXRA 2PVZA 5ANPA 2ZXPA 1U1XA 1BWZA 2QB8A 4K7GB 4K7XA 4LB0A 3W5WA 3EKMA 2IW4A 2HAWA 2MPBA 5H2GA 4JCIA 5HA4A 1WPPA 2ZXOA 3G98A 1T6KA 1S7JA 4PY9A 2QB6A 3PW9A 3WQZA 1K20A 4K8LA 2LT2A 2ZVFA 2QB7A 4GL6A 5M47A 2Q9JA 3PVHA 2AZPA 3G7KA 4LS9A 3ICJA 2PW0A 1SDJA 4J9XA 4IJZA 2H9FA 1WPMA 2ENXA 3EDNA 3FVEA 4JUUA 2GKJA 1QY9A 2GKEA 1XUAA 1I74A 4DUNA 1YM5A 1U1VA 1U1WA 4JD7A 1K23A 3DEVA 2YMAA 4OA3A 4Q2HA 4J9WA 2KPTA 4IK0A 1W61A 3IGHX 1U0KA 4RPAA 2Q9HA 2KW7A 3EJXA 2OTNA 1QYAA 4JBDA 1IR6A 1GQZA 5H2YA 3PTJA 1XUBA 4Q60A 2EB0A
chains in the Genus database with same CATH topology
5IWEA 1TM0A 1W62A 4LG3A 2ZXRA 2PVZA 5ANPA 2ZXPA 1U1XA 1BWZA 2QB8A 4K7GB 4K7XA 4LB0A 3W5WA 3EKMA 2IW4A 2HAWA 2MPBA 5H2GA 4JCIA 5HA4A 1WPPA 2ZXOA 3G98A 1T6KA 1S7JA 4PY9A 2QB6A 3PW9A 3WQZA 1K20A 4K8LA 2LT2A 2ZVFA 2QB7A 4GL6A 5M47A 2Q9JA 3PVHA 2AZPA 3G7KA 4LS9A 3ICJA 2PW0A 1SDJA 4J9XA 4IJZA 2H9FA 1WPMA 2ENXA 3EDNA 3FVEA 4JUUA 2GKJA 1QY9A 2GKEA 1XUAA 1I74A 4DUNA 1YM5A 1U1VA 1U1WA 4JD7A 1K23A 3DEVA 2YMAA 4OA3A 4Q2HA 4J9WA 2KPTA 4IK0A 1W61A 3IGHX 1U0KA 4RPAA 2Q9HA 2KW7A 3EJXA 2OTNA 1QYAA 4JBDA 1IR6A 1GQZA 5H2YA 3PTJA 1XUBA 4Q60A 2EB0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JD7 A;  1U1V A;  5IWE A;  5H2G A;  4Q2H A;  4JCI A;  1TM0 A;  3G7K A;  5HA4 A;  4J9W A;  4IK0 A;  1W62 A;  1T6K A;  1W61 A;  2PW0 A;  1S7J A;  1SDJ A;  1U0K A;  2PVZ A;  2Q9H A;  4J9X A;  4IJZ A;  3EJX A;  2OTN A;  2H9F A;  1QYA A;  1U1X A;  1BWZ A;  4K8L A;  4K7G B;  4JBD A;  3EDN A;  3FVE A;  4JUU A;  2GKJ A;  1QY9 A;  2GKE A;  5M47 A;  1XUA A;  4K7X A;  4DUN A;  4LB0 A;  2Q9J A;  1GQZ A;  2AZP A;  5H2Y A;  3EKM A;  1XUB A;  4Q60 A;  1YM5 A;  1U1W A; 
#chains in the Genus database with same CATH topology
 5IWE A;  1TM0 A;  1W62 A;  4LG3 A;  2ZXR A;  2PVZ A;  5ANP A;  2ZXP A;  1U1X A;  1BWZ A;  2QB8 A;  4K7G B;  4K7X A;  4LB0 A;  3W5W A;  3EKM A;  2IW4 A;  2HAW A;  2MPB A;  5H2G A;  4JCI A;  5HA4 A;  1WPP A;  2ZXO A;  3G98 A;  1T6K A;  1S7J A;  4PY9 A;  2QB6 A;  3PW9 A;  3WQZ A;  1K20 A;  4K8L A;  2LT2 A;  2ZVF A;  2QB7 A;  4GL6 A;  5M47 A;  2Q9J A;  3PVH A;  2AZP A;  3G7K A;  4LS9 A;  3ICJ A;  2PW0 A;  1SDJ A;  4J9X A;  4IJZ A;  2H9F A;  1WPM A;  2ENX A;  3EDN A;  3FVE A;  4JUU A;  2GKJ A;  1QY9 A;  2GKE A;  1XUA A;  1I74 A;  4DUN A;  1YM5 A;  1U1V A;  1U1W A;  4JD7 A;  1K23 A;  3DEV A;  2YMA A;  4OA3 A;  4Q2H A;  4J9W A;  2KPT A;  4IK0 A;  1W61 A;  3IGH X;  1U0K A;  4RPA A;  2Q9H A;  2KW7 A;  3EJX A;  2OTN A;  1QYA A;  4JBD A;  1IR6 A;  1GQZ A;  5H2Y A;  3PTJ A;  1XUB A;  4Q60 A;  2EB0 A; 
#chains in the Genus database with same CATH homology
 5IWE A;  1TM0 A;  1W62 A;  4LG3 A;  2ZXR A;  2PVZ A;  5ANP A;  2ZXP A;  1U1X A;  1BWZ A;  2QB8 A;  4K7G B;  4K7X A;  4LB0 A;  3W5W A;  3EKM A;  2IW4 A;  2HAW A;  2MPB A;  5H2G A;  4JCI A;  5HA4 A;  1WPP A;  2ZXO A;  3G98 A;  1T6K A;  1S7J A;  4PY9 A;  2QB6 A;  3PW9 A;  3WQZ A;  1K20 A;  4K8L A;  2LT2 A;  2ZVF A;  2QB7 A;  4GL6 A;  5M47 A;  2Q9J A;  3PVH A;  2AZP A;  3G7K A;  4LS9 A;  3ICJ A;  2PW0 A;  1SDJ A;  4J9X A;  4IJZ A;  2H9F A;  1WPM A;  2ENX A;  3EDN A;  3FVE A;  4JUU A;  2GKJ A;  1QY9 A;  2GKE A;  1XUA A;  1I74 A;  4DUN A;  1YM5 A;  1U1V A;  1U1W A;  4JD7 A;  1K23 A;  3DEV A;  2YMA A;  4OA3 A;  4Q2H A;  4J9W A;  2KPT A;  4IK0 A;  1W61 A;  3IGH X;  1U0K A;  4RPA A;  2Q9H A;  2KW7 A;  3EJX A;  2OTN A;  1QYA A;  4JBD A;  1IR6 A;  1GQZ A;  5H2Y A;  3PTJ A;  1XUB A;  4Q60 A;  2EB0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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