1U1XA

Structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
278
structure length
278
Chain Sequence
MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase, lyase
molecule keywords Phenazine biosynthesis protein phzF
total genus 79
structure length 278
sequence length 278
chains with identical sequence B
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1xA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1xA01
2PW0A 1GQZA 5IWEA 4K7XA 4Q2HA 1YM5A 2OTNA 4IK0A 3EKMA 3FVEA 4K7GB 1XUAA 1U1VA 5M47A 4K8LA 1BWZA 2PVZA 1T6KA 1U0KA 4Q60A 2AZPA 3EJXA 1W61A 2Q9HA 4JD7A 2GKJA 1W62A 2Q9JA 4J9XA 4JBDA 3G7KA 4J9WA 5HA4A 1TM0A 4IJZA 4DUNA 1XUBA 1QY9A 2GKEA 4LB0A 5H2YA 3EDNA 1U1XA 1U1WA 1S7JA 1QYAA 1SDJA 4JCIA 5H2GA 2H9FA 4JUUA
chains in the Genus database with same CATH superfamily
1GQZA 4Q2HA 1YM5A 4LG3A 4IK0A 4K7GB 1U0KA 3W5WA 4OA3A 2KPTA 2ZXPA 3ICJA 1IR6A 2Q9JA 5ANPA 3G7KA 4GL6A 1QY9A 2ZXRA 4LS9A 4LB0A 1U1VA 2PW0A 1SDJA 2EB0A 5M47A 3IGHX 2QB8A 1XUAA 2HAWA 2ZVFA 2AZPA 4JD7A 2GKJA 2YMAA 3PW9A 5HA4A 4DUNA 2GKEA 5H2YA 3WQZA 1U1WA 2QB6A 5H2GA 2OTNA 3EKMA 3G98A 2QB7A 1K20A 4K8LA 1BWZA 4RPAA 4PY9A 3EJXA 1W61A 3PVHA 2KW7A 4J9WA 2ZXOA 2ENXA 1WPPA 1XUBA 3EDNA 2LT2A 1I74A 2H9FA 4JUUA 5IWEA 4K7XA 3FVEA 2MPBA 2PVZA 1T6KA 4Q60A 3DEVA 2Q9HA 1W62A 4J9XA 4JBDA 1TM0A 4IJZA 1WPMA 1K23A 1U1XA 2IW4A 1S7JA 1QYAA 4JCIA 3PTJA
chains in the Genus database with same CATH topology
1GQZA 4Q2HA 1YM5A 4LG3A 4IK0A 4K7GB 1U0KA 3W5WA 4OA3A 2KPTA 2ZXPA 3ICJA 1IR6A 2Q9JA 5ANPA 3G7KA 4GL6A 1QY9A 2ZXRA 4LS9A 4LB0A 1U1VA 2PW0A 1SDJA 2EB0A 5M47A 3IGHX 2QB8A 1XUAA 2HAWA 2ZVFA 2AZPA 4JD7A 2GKJA 2YMAA 3PW9A 5HA4A 4DUNA 2GKEA 5H2YA 3WQZA 1U1WA 2QB6A 5H2GA 2OTNA 3EKMA 3G98A 2QB7A 1K20A 4K8LA 1BWZA 4RPAA 4PY9A 3EJXA 1W61A 3PVHA 2KW7A 4J9WA 2ZXOA 2ENXA 1WPPA 1XUBA 3EDNA 2LT2A 1I74A 2H9FA 4JUUA 5IWEA 4K7XA 3FVEA 2MPBA 2PVZA 1T6KA 4Q60A 3DEVA 2Q9HA 1W62A 4J9XA 4JBDA 1TM0A 4IJZA 1WPMA 1K23A 1U1XA 2IW4A 1S7JA 1QYAA 4JCIA 3PTJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PW0 A;  1GQZ A;  5IWE A;  4K7X A;  4Q2H A;  1YM5 A;  2OTN A;  4IK0 A;  3EKM A;  3FVE A;  4K7G B;  1XUA A;  1U1V A;  5M47 A;  4K8L A;  1BWZ A;  2PVZ A;  1T6K A;  1U0K A;  4Q60 A;  2AZP A;  3EJX A;  1W61 A;  2Q9H A;  4JD7 A;  2GKJ A;  1W62 A;  2Q9J A;  4J9X A;  4JBD A;  3G7K A;  4J9W A;  5HA4 A;  1TM0 A;  4IJZ A;  4DUN A;  1XUB A;  1QY9 A;  2GKE A;  4LB0 A;  5H2Y A;  3EDN A;  1U1X A;  1U1W A;  1S7J A;  1QYA A;  1SDJ A;  4JCI A;  5H2G A;  2H9F A;  4JUU A; 
#chains in the Genus database with same CATH topology
 1GQZ A;  4Q2H A;  1YM5 A;  4LG3 A;  4IK0 A;  4K7G B;  1U0K A;  3W5W A;  4OA3 A;  2KPT A;  2ZXP A;  3ICJ A;  1IR6 A;  2Q9J A;  5ANP A;  3G7K A;  4GL6 A;  1QY9 A;  2ZXR A;  4LS9 A;  4LB0 A;  1U1V A;  2PW0 A;  1SDJ A;  2EB0 A;  5M47 A;  3IGH X;  2QB8 A;  1XUA A;  2HAW A;  2ZVF A;  2AZP A;  4JD7 A;  2GKJ A;  2YMA A;  3PW9 A;  5HA4 A;  4DUN A;  2GKE A;  5H2Y A;  3WQZ A;  1U1W A;  2QB6 A;  5H2G A;  2OTN A;  3EKM A;  3G98 A;  2QB7 A;  1K20 A;  4K8L A;  1BWZ A;  4RPA A;  4PY9 A;  3EJX A;  1W61 A;  3PVH A;  2KW7 A;  4J9W A;  2ZXO A;  2ENX A;  1WPP A;  1XUB A;  3EDN A;  2LT2 A;  1I74 A;  2H9F A;  4JUU A;  5IWE A;  4K7X A;  3FVE A;  2MPB A;  2PVZ A;  1T6K A;  4Q60 A;  3DEV A;  2Q9H A;  1W62 A;  4J9X A;  4JBD A;  1TM0 A;  4IJZ A;  1WPM A;  1K23 A;  1U1X A;  2IW4 A;  1S7J A;  1QYA A;  4JCI A;  3PTJ A; 
#chains in the Genus database with same CATH homology
 1GQZ A;  4Q2H A;  1YM5 A;  4LG3 A;  4IK0 A;  4K7G B;  1U0K A;  3W5W A;  4OA3 A;  2KPT A;  2ZXP A;  3ICJ A;  1IR6 A;  2Q9J A;  5ANP A;  3G7K A;  4GL6 A;  1QY9 A;  2ZXR A;  4LS9 A;  4LB0 A;  1U1V A;  2PW0 A;  1SDJ A;  2EB0 A;  5M47 A;  3IGH X;  2QB8 A;  1XUA A;  2HAW A;  2ZVF A;  2AZP A;  4JD7 A;  2GKJ A;  2YMA A;  3PW9 A;  5HA4 A;  4DUN A;  2GKE A;  5H2Y A;  3WQZ A;  1U1W A;  2QB6 A;  5H2G A;  2OTN A;  3EKM A;  3G98 A;  2QB7 A;  1K20 A;  4K8L A;  1BWZ A;  4RPA A;  4PY9 A;  3EJX A;  1W61 A;  3PVH A;  2KW7 A;  4J9W A;  2ZXO A;  2ENX A;  1WPP A;  1XUB A;  3EDN A;  2LT2 A;  1I74 A;  2H9F A;  4JUU A;  5IWE A;  4K7X A;  3FVE A;  2MPB A;  2PVZ A;  1T6K A;  4Q60 A;  3DEV A;  2Q9H A;  1W62 A;  4J9X A;  4JBD A;  1TM0 A;  4IJZ A;  1WPM A;  1K23 A;  1U1X A;  2IW4 A;  1S7J A;  1QYA A;  4JCI A;  3PTJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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