1U1XA

Structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79
Total Genus 79
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
278
structure length
278
Chain Sequence
b'MHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Phenazine biosynthesis protein phzF
publication title Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase, lyase
total genus 79
structure length 278
sequence length 278
chains with identical sequence B
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2004-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1xA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1u1xA01
4DUNA 4Q60A 1S7JA 2PW0A 3EKMA 1QYAA 4JD7A 1W61A 3EJXA 4JBDA 4K8LA 3G7KA 2PVZA 4Q2HA 2GKEA 1XUAA 2Q9HA 4JCIA 2H9FA 1SDJA 1YM5A 2OTNA 4J9WA 1BWZA 4IJZA 1T6KA 1U0KA 4JUUA 4J9XA 3FVEA 4LB0A 1U1WA 4IK0A 1GQZA 1U1XA 3EDNA 1W62A 4K7XA 5M47A 1TM0A 1QY9A 2Q9JA 5HA4A 5H2GA 1U1VA 5IWEA 2AZPA 5H2YA 4K7GB 2GKJA 1XUBA
chains in the Genus database with same CATH superfamily
4Q60A 1S7JA 3EKMA 2ENXA 1WPMA 2MPBA 2GKEA 5ANPA 1SDJA 4PY9A 4J9WA 4IJZA 2ZXOA 2IW4A 3PW9A 4LB0A 1GQZA 5H2GA 5HA4A 3G98A 4LG3A 3PVHA 2EB0A 2PW0A 1K20A 2LT2A 4JD7A 3EJXA 3WQZA 4K8LA 4JCIA 1IR6A 2OTNA 4J9XA 3FVEA 4RPAA 4IK0A 1U1XA 2QB8A 5IWEA 2Q9JA 2AZPA 5H2YA 2GKJA 2ZXRA 4DUNA 1QYAA 2ZXPA 1W61A 4JBDA 2H9FA 2HAWA 1T6KA 1U0KA 1U1WA 2YMAA 5M47A 1TM0A 3IGHX 3PTJA 3ICJA 1WPPA 1XUBA 2QB7A 2QB6A 3DEVA 4OA3A 1I74A 2PVZA 3G7KA 4Q2HA 1K23A 1XUAA 2Q9HA 2KW7A 1YM5A 2KPTA 4JUUA 2ZVFA 3W5WA 4GL6A 3EDNA 1W62A 4K7XA 1QY9A 4LS9A 1U1VA 4K7GB 1BWZA
chains in the Genus database with same CATH topology
4Q60A 1S7JA 3EKMA 2ENXA 1WPMA 2MPBA 2GKEA 5ANPA 1SDJA 4PY9A 4J9WA 4IJZA 2ZXOA 2IW4A 3PW9A 4LB0A 1GQZA 5H2GA 5HA4A 3G98A 4LG3A 3PVHA 2EB0A 2PW0A 1K20A 2LT2A 4JD7A 3EJXA 3WQZA 4K8LA 4JCIA 1IR6A 2OTNA 4J9XA 3FVEA 4RPAA 4IK0A 1U1XA 2QB8A 5IWEA 2Q9JA 2AZPA 5H2YA 2GKJA 2ZXRA 4DUNA 1QYAA 2ZXPA 1W61A 4JBDA 2H9FA 2HAWA 1T6KA 1U0KA 1U1WA 2YMAA 5M47A 1TM0A 3IGHX 3PTJA 3ICJA 1WPPA 1XUBA 2QB7A 2QB6A 3DEVA 4OA3A 1I74A 2PVZA 3G7KA 4Q2HA 1K23A 1XUAA 2Q9HA 2KW7A 1YM5A 2KPTA 4JUUA 2ZVFA 3W5WA 4GL6A 3EDNA 1W62A 4K7XA 1QY9A 4LS9A 1U1VA 4K7GB 1BWZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DUN A;  4Q60 A;  1S7J A;  2PW0 A;  3EKM A;  1QYA A;  4JD7 A;  1W61 A;  3EJX A;  4JBD A;  4K8L A;  3G7K A;  2PVZ A;  4Q2H A;  2GKE A;  1XUA A;  2Q9H A;  4JCI A;  2H9F A;  1SDJ A;  1YM5 A;  2OTN A;  4J9W A;  1BWZ A;  4IJZ A;  1T6K A;  1U0K A;  4JUU A;  4J9X A;  3FVE A;  4LB0 A;  1U1W A;  4IK0 A;  1GQZ A;  1U1X A;  3EDN A;  1W62 A;  4K7X A;  5M47 A;  1TM0 A;  1QY9 A;  2Q9J A;  5HA4 A;  5H2G A;  1U1V A;  5IWE A;  2AZP A;  5H2Y A;  4K7G B;  2GKJ A;  1XUB A; 
#chains in the Genus database with same CATH topology
 4Q60 A;  1S7J A;  3EKM A;  2ENX A;  1WPM A;  2MPB A;  2GKE A;  5ANP A;  1SDJ A;  4PY9 A;  4J9W A;  4IJZ A;  2ZXO A;  2IW4 A;  3PW9 A;  4LB0 A;  1GQZ A;  5H2G A;  5HA4 A;  3G98 A;  4LG3 A;  3PVH A;  2EB0 A;  2PW0 A;  1K20 A;  2LT2 A;  4JD7 A;  3EJX A;  3WQZ A;  4K8L A;  4JCI A;  1IR6 A;  2OTN A;  4J9X A;  3FVE A;  4RPA A;  4IK0 A;  1U1X A;  2QB8 A;  5IWE A;  2Q9J A;  2AZP A;  5H2Y A;  2GKJ A;  2ZXR A;  4DUN A;  1QYA A;  2ZXP A;  1W61 A;  4JBD A;  2H9F A;  2HAW A;  1T6K A;  1U0K A;  1U1W A;  2YMA A;  5M47 A;  1TM0 A;  3IGH X;  3PTJ A;  3ICJ A;  1WPP A;  1XUB A;  2QB7 A;  2QB6 A;  3DEV A;  4OA3 A;  1I74 A;  2PVZ A;  3G7K A;  4Q2H A;  1K23 A;  1XUA A;  2Q9H A;  2KW7 A;  1YM5 A;  2KPT A;  4JUU A;  2ZVF A;  3W5W A;  4GL6 A;  3EDN A;  1W62 A;  4K7X A;  1QY9 A;  4LS9 A;  1U1V A;  4K7G B;  1BWZ A; 
#chains in the Genus database with same CATH homology
 4Q60 A;  1S7J A;  3EKM A;  2ENX A;  1WPM A;  2MPB A;  2GKE A;  5ANP A;  1SDJ A;  4PY9 A;  4J9W A;  4IJZ A;  2ZXO A;  2IW4 A;  3PW9 A;  4LB0 A;  1GQZ A;  5H2G A;  5HA4 A;  3G98 A;  4LG3 A;  3PVH A;  2EB0 A;  2PW0 A;  1K20 A;  2LT2 A;  4JD7 A;  3EJX A;  3WQZ A;  4K8L A;  4JCI A;  1IR6 A;  2OTN A;  4J9X A;  3FVE A;  4RPA A;  4IK0 A;  1U1X A;  2QB8 A;  5IWE A;  2Q9J A;  2AZP A;  5H2Y A;  2GKJ A;  2ZXR A;  4DUN A;  1QYA A;  2ZXP A;  1W61 A;  4JBD A;  2H9F A;  2HAW A;  1T6K A;  1U0K A;  1U1W A;  2YMA A;  5M47 A;  1TM0 A;  3IGH X;  3PTJ A;  3ICJ A;  1WPP A;  1XUB A;  2QB7 A;  2QB6 A;  3DEV A;  4OA3 A;  1I74 A;  2PVZ A;  3G7K A;  4Q2H A;  1K23 A;  1XUA A;  2Q9H A;  2KW7 A;  1YM5 A;  2KPT A;  4JUU A;  2ZVF A;  3W5W A;  4GL6 A;  3EDN A;  1W62 A;  4K7X A;  1QY9 A;  4LS9 A;  1U1V A;  4K7G B;  1BWZ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...