1U2VF

Crystal structure of arp2/3 complex with bound adp and calcium
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
166
structure length
166
Chain Sequence
ATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Actin-Related Protein 3
publication title Crystal structures of actin-related protein 2/3 complex with bound ATP or ADP
pubmed doi rcsb
total genus 58
structure length 166
sequence length 166
ec nomenclature
pdb deposition date 2004-07-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF05856 ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 1u2vF00
3UKUF 2P9PD 3ULEF 2P9UF 2P9KF 3DWLD 1U2VF 3DXMD 3DXKF 1K8KD 3UKRD 2P9SF 1TYQF 4XEID 4JD2F 2P9LF 2P9UD 3UKUD 3ULED 3RSEF 2P9KD 2P9IF 1U2VD 2P9NF 3DXKD 2P9SD 1TYQD 2P9PF 4JD2D 2P9LD 3DWLF 3DXMF 1K8KF 3UKRF 3RSED 2P9ID 2P9ND 4XEIF
chains in the Genus database with same CATH superfamily
2XGAA 2KC5A 3UKUF 2P9PD 3ULEF 1N5BA 1RY9A 2P9UF 3KXYA 3TU3A 4AKXA 2P9KF 3DWLD 1U2VF 3EPUA 3DXMD 4GF3A 3DXKF 4GSLC 1K8KD 1JYOA 3UKRD 2LPUA 1XKPB 1TYQF 2P9SF 2OD0A 4XEID 2BHOA 3CXJA 4JD2F 4EBRA 4JMFB 2P9LF 2PLGA 1K6ZA 1K3SA 2P9UD 3UKUD 3ULED 2BSIA 2MQDA 2BSHA 1S28A 3RSEF 2P9KD 2DYTA 1U2VD 2P9IF 2P9NF 3DXKD 2P9SD 1TYQD 1JYAA 1XKPC 2BSJA 3VX7B 2P9PF 4JD2D 2P9LD 1TTWA 3DWLF 3VX8B 1L2WA 3DXMF 1K8KF 3UKRF 3RSED 1K3EA 2P9ID 2FM8A 4H5BA 2P9ND 4XEIF 4G6TA
chains in the Genus database with same CATH topology
2XGAA 2KC5A 3UKUF 2P9PD 3ULEF 1N5BA 1RY9A 2P9UF 3KXYA 3TU3A 4AKXA 2P9KF 3DWLD 1U2VF 3EPUA 3DXMD 4GF3A 3DXKF 4GSLC 1K8KD 1JYOA 3UKRD 2LPUA 1XKPB 1TYQF 2P9SF 4XEID 2BHOA 3CXJA 4JD2F 4EBRA 4JMFB 2P9LF 2PLGA 1K6ZA 1K3SA 2P9UD 3UKUD 3ULED 2BSIA 2MQDA 2BSHA 1S28A 3RSEF 2P9KD 2DYTA 1U2VD 2P9IF 2P9NF 3DXKD 2P9SD 1TYQD 1JYAA 1XKPC 2BSJA 3VX7B 2P9PF 4JD2D 2P9LD 1TTWA 3DWLF 3VX8B 1L2WA 3DXMF 1K8KF 3UKRF 3RSED 1K3EA 2P9ID 2FM8A 4H5BA 2P9ND 4XEIF 4G6TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UKU F;  2P9P D;  3ULE F;  2P9U F;  2P9K F;  3DWL D;  1U2V F;  3DXM D;  3DXK F;  1K8K D;  3UKR D;  2P9S F;  1TYQ F;  4XEI D;  4JD2 F;  2P9L F;  2P9U D;  3UKU D;  3ULE D;  3RSE F;  2P9K D;  2P9I F;  1U2V D;  2P9N F;  3DXK D;  2P9S D;  1TYQ D;  2P9P F;  4JD2 D;  2P9L D;  3DWL F;  3DXM F;  1K8K F;  3UKR F;  3RSE D;  2P9I D;  2P9N D;  4XEI F; 
#chains in the Genus database with same CATH topology
 2XGA A;  2KC5 A;  3UKU F;  2P9P D;  3ULE F;  1N5B A;  1RY9 A;  2P9U F;  3KXY A;  3TU3 A;  4AKX A;  2P9K F;  3DWL D;  1U2V F;  3EPU A;  3DXM D;  4GF3 A;  3DXK F;  4GSL C;  1K8K D;  1JYO A;  3UKR D;  2LPU A;  1XKP B;  1TYQ F;  2P9S F;  2OD0 A;  4XEI D;  2BHO A;  3CXJ A;  4JD2 F;  4EBR A;  4JMF B;  2P9L F;  2PLG A;  1K6Z A;  1K3S A;  2P9U D;  3UKU D;  3ULE D;  2BSI A;  2MQD A;  2BSH A;  1S28 A;  3RSE F;  2P9K D;  2DYT A;  1U2V D;  2P9I F;  2P9N F;  3DXK D;  2P9S D;  1TYQ D;  1JYA A;  1XKP C;  2BSJ A;  3VX7 B;  2P9P F;  4JD2 D;  2P9L D;  1TTW A;  3DWL F;  3VX8 B;  1L2W A;  3DXM F;  1K8K F;  3UKR F;  3RSE D;  1K3E A;  2P9I D;  2FM8 A;  4H5B A;  2P9N D;  4XEI F;  4G6T A; 
#chains in the Genus database with same CATH homology
 2XGA A;  2KC5 A;  3UKU F;  2P9P D;  3ULE F;  1N5B A;  1RY9 A;  2P9U F;  3KXY A;  3TU3 A;  4AKX A;  2P9K F;  3DWL D;  1U2V F;  3EPU A;  3DXM D;  4GF3 A;  3DXK F;  4GSL C;  1K8K D;  1JYO A;  3UKR D;  2LPU A;  1XKP B;  1TYQ F;  2P9S F;  4XEI D;  2BHO A;  3CXJ A;  4JD2 F;  4EBR A;  4JMF B;  2P9L F;  2PLG A;  1K6Z A;  1K3S A;  2P9U D;  3UKU D;  3ULE D;  2BSI A;  2MQD A;  2BSH A;  1S28 A;  3RSE F;  2P9K D;  2DYT A;  1U2V D;  2P9I F;  2P9N F;  3DXK D;  2P9S D;  1TYQ D;  1JYA A;  1XKP C;  2BSJ A;  3VX7 B;  2P9P F;  4JD2 D;  2P9L D;  1TTW A;  3DWL F;  3VX8 B;  1L2W A;  3DXM F;  1K8K F;  3UKR F;  3RSE D;  1K3E A;  2P9I D;  2FM8 A;  4H5B A;  2P9N D;  4XEI F;  4G6T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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