1U6PA

Nmr structure of the mlv encapsidation signal bound to the nucleocapsid protein
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
56
structure length
56
Chain Sequence
ATVVSGQKQDRQGGERRRSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRPQTSLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/rna
molecule keywords 101-MER
publication title Structural basis for packaging the dimeric genome of Moloney murine leukaemia virus
pubmed doi rcsb
source organism Moloney murine leukemia virus
total genus 4
structure length 56
sequence length 56
ec nomenclature
pdb deposition date 2004-07-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00098 zf-CCHC Zinc knuckle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.60.10 Few Secondary Structures Irregular HIV-1 Nucleocapsid Protein Zinc finger, CCHC-type 1u6pA00
2JZWA 1WWGA 1A6BB 2M3ZA 1A1TA 1AAFA 2EC7A 1ESKA 2EXFA 2LI8A 1WWEA 1Q3ZA 1MFSA 2YSAA 1BJ6A 2IHXA 3TS2A 1U6PA 2CQFA 1WWFA 2L4LA 1F6UA 3TRZA 1WWDA 3NYBB 1Q3YA 3TS0A
chains in the Genus database with same CATH superfamily
2JZWA 1WWGA 1A6BB 2M3ZA 1A1TA 1AAFA 2EC7A 1ESKA 2EXFA 2LI8A 1WWEA 1Q3ZA 1MFSA 2YSAA 1BJ6A 2IHXA 3TS2A 1U6PA 2CQFA 1WWFA 2L4LA 1F6UA 3TRZA 1WWDA 3NYBB 1Q3YA 3TS0A
chains in the Genus database with same CATH topology
2JZWA 1WWGA 1A6BB 2M3ZA 1A1TA 1AAFA 2EC7A 1ESKA 2EXFA 2LI8A 1WWEA 1Q3ZA 1MFSA 2YSAA 1BJ6A 2IHXA 3TS2A 1U6PA 2CQFA 1WWFA 2L4LA 1F6UA 3TRZA 1WWDA 3NYBB 1Q3YA 3TS0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JZW A;  1WWG A;  1A6B B;  2M3Z A;  1A1T A;  1AAF A;  2EC7 A;  1ESK A;  2EXF A;  2LI8 A;  1WWE A;  1Q3Z A;  1MFS A;  2YSA A;  1BJ6 A;  2IHX A;  3TS2 A;  1U6P A;  2CQF A;  1WWF A;  2L4L A;  1F6U A;  3TRZ A;  1WWD A;  3NYB B;  1Q3Y A;  3TS0 A; 
#chains in the Genus database with same CATH topology
 2JZW A;  1WWG A;  1A6B B;  2M3Z A;  1A1T A;  1AAF A;  2EC7 A;  1ESK A;  2EXF A;  2LI8 A;  1WWE A;  1Q3Z A;  1MFS A;  2YSA A;  1BJ6 A;  2IHX A;  3TS2 A;  1U6P A;  2CQF A;  1WWF A;  2L4L A;  1F6U A;  3TRZ A;  1WWD A;  3NYB B;  1Q3Y A;  3TS0 A; 
#chains in the Genus database with same CATH homology
 2JZW A;  1WWG A;  1A6B B;  2M3Z A;  1A1T A;  1AAF A;  2EC7 A;  1ESK A;  2EXF A;  2LI8 A;  1WWE A;  1Q3Z A;  1MFS A;  2YSA A;  1BJ6 A;  2IHX A;  3TS2 A;  1U6P A;  2CQF A;  1WWF A;  2L4L A;  1F6U A;  3TRZ A;  1WWD A;  3NYB B;  1Q3Y A;  3TS0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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