1UBBA

Crystal structure of rat ho-1 in complex with ferrous heme
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
212
structure length
212
Chain Sequence
QDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Heme oxygenase 1
publication title Crystal Structures of Ferrous and CO-, CN(-)-, and NO-Bound Forms of Rat Heme Oxygenase-1 (HO-1) in Complex with Heme: Structural Implications for Discrimination between CO and O(2) in HO-1.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 89
structure length 212
sequence length 212
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2003-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 1ubbA00
1TO9A 4G7TA 1OTVA 1UDDA 4NY7A 3B5PA 3RM5A 4WWZA 1J2CA 2A2MA 4G98A 1T5PA 1DVGA 1WOVA 1P3UA 1SK7A 1TWRA 1ULXA 3K4FA 1IRMA 1N45A 4FN6A 4WWJA 2E7EA 4G99A 4GPFA 1WOXA 2RD3A 1OYLA 1DVEA 1V8XA 4G7UA 1TWNA 2QCXA 3HOKA 1WE1A 1IW1A 1XK1A 3HLXA 2Q32A 1UBBA 4GPHA 2A6BA 1Z72A 1WZDA 1NI6A 4WMHA 1IX4A 1WNVA 3HMLA 4G7PA 1WWMA 1XK0A 1S13A 1WZGA 2GM8A 4G7LA 1OZRA 2QZCA 1RTWA 3MVUA 2Q4XA 3NO6A 1OZLA 1XK3A 1IX3A 3OQLA 1S8CA 1YAFA 1J02A 1TO9B 2RGZA 3I9UA 1OZWA 1XJZA 1XK2A 4GPCA 4LQXA 4WD4A 4WX0A 1IW0A 4G8UA 1P3TA 3MOOA 1WZFA 4MECA 1IVJA 1WNWA 1N3UA 1P3VA 1WNXA 4GOHA 4G8WA 2F2GA 5BTQA 1YAKA 3TGMA 1J77A 3I8RA 3BJDA 3I9TA 3CZYA 1VGIA 1OTWA 2DY5A 2A2OA 1RCWA 1WOWA 4RAJA 3HNHA 1TYHA 3DDEA 1OYKA 2ZVUA 3B5OA 2Z68A 4G8PA 2QPPA 2GM7A 1OZEA 3IBXA
chains in the Genus database with same CATH superfamily
1TO9A 4G7TA 1OTVA 1UDDA 4NY7A 3B5PA 3RM5A 4WWZA 1J2CA 2A2MA 4G98A 1T5PA 1DVGA 1WOVA 1P3UA 1SK7A 1TWRA 1ULXA 3K4FA 1IRMA 1N45A 4FN6A 4WWJA 2E7EA 4G99A 4GPFA 1WOXA 2RD3A 1OYLA 1DVEA 1V8XA 4G7UA 1TWNA 2QCXA 3HOKA 1WE1A 1IW1A 1XK1A 3HLXA 2Q32A 1UBBA 4GPHA 2A6BA 1Z72A 1WZDA 1NI6A 4WMHA 1IX4A 1WNVA 3HMLA 4G7PA 1WWMA 1XK0A 1S13A 1WZGA 2GM8A 4G7LA 1OZRA 2QZCA 1RTWA 3MVUA 2Q4XA 3NO6A 1OZLA 1XK3A 1IX3A 3OQLA 1S8CA 1YAFA 1J02A 1TO9B 2RGZA 3I9UA 1OZWA 1XJZA 1XK2A 4GPCA 4LQXA 4WD4A 4WX0A 1IW0A 4G8UA 1P3TA 3MOOA 1WZFA 4MECA 1IVJA 1WNWA 1N3UA 1P3VA 1WNXA 4GOHA 4G8WA 2F2GA 5BTQA 1YAKA 3TGMA 1J77A 3I8RA 3BJDA 3I9TA 3CZYA 1VGIA 1OTWA 2DY5A 2A2OA 1RCWA 1WOWA 4RAJA 3HNHA 1TYHA 3DDEA 1OYKA 2ZVUA 3B5OA 2Z68A 4G8PA 2QPPA 2GM7A 2LCUA 1OZEA 3IBXA
chains in the Genus database with same CATH topology
1TO9A 4G7TA 1OTVA 1UDDA 4NY7A 3B5PA 3RM5A 4WWZA 1J2CA 2A2MA 4G98A 1T5PA 1DVGA 1WOVA 1P3UA 1SK7A 1TWRA 1ULXA 3K4FA 1IRMA 1N45A 4FN6A 4WWJA 2E7EA 4G99A 4GPFA 1WOXA 2RD3A 1OYLA 1DVEA 1V8XA 4G7UA 1TWNA 2QCXA 3HOKA 1WE1A 1IW1A 1XK1A 3HLXA 2Q32A 1UBBA 4GPHA 2A6BA 1Z72A 1WZDA 1NI6A 4WMHA 1IX4A 1WNVA 3HMLA 4G7PA 1WWMA 1XK0A 1S13A 1WZGA 2GM8A 4G7LA 1OZRA 2QZCA 1RTWA 3MVUA 2Q4XA 3NO6A 1OZLA 1XK3A 1IX3A 3OQLA 1S8CA 1YAFA 1J02A 1TO9B 2RGZA 3I9UA 1OZWA 1XJZA 1XK2A 4GPCA 4LQXA 4WD4A 4WX0A 1IW0A 4G8UA 1P3TA 3MOOA 1WZFA 4MECA 1IVJA 1WNWA 1N3UA 1P3VA 1WNXA 4GOHA 4G8WA 2F2GA 5BTQA 1YAKA 3TGMA 1J77A 3I8RA 3BJDA 3I9TA 3CZYA 1VGIA 1OTWA 2DY5A 2A2OA 1RCWA 1WOWA 4RAJA 3HNHA 1TYHA 3DDEA 1OYKA 2ZVUA 3B5OA 2Z68A 4G8PA 2QPPA 2GM7A 1OZEA 3IBXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TO9 A;  4G7T A;  1OTV A;  1UDD A;  4NY7 A;  3B5P A;  3RM5 A;  4WWZ A;  1J2C A;  2A2M A;  4G98 A;  1T5P A;  1DVG A;  1WOV A;  1P3U A;  1SK7 A;  1TWR A;  1ULX A;  3K4F A;  1IRM A;  1N45 A;  4FN6 A;  4WWJ A;  2E7E A;  4G99 A;  4GPF A;  1WOX A;  2RD3 A;  1OYL A;  1DVE A;  1V8X A;  4G7U A;  1TWN A;  2QCX A;  3HOK A;  1WE1 A;  1IW1 A;  1XK1 A;  3HLX A;  2Q32 A;  1UBB A;  4GPH A;  2A6B A;  1Z72 A;  1WZD A;  1NI6 A;  4WMH A;  1IX4 A;  1WNV A;  3HML A;  4G7P A;  1WWM A;  1XK0 A;  1S13 A;  1WZG A;  2GM8 A;  4G7L A;  1OZR A;  2QZC A;  1RTW A;  3MVU A;  2Q4X A;  3NO6 A;  1OZL A;  1XK3 A;  1IX3 A;  3OQL A;  1S8C A;  1YAF A;  1J02 A;  1TO9 B;  2RGZ A;  3I9U A;  1OZW A;  1XJZ A;  1XK2 A;  4GPC A;  4LQX A;  4WD4 A;  4WX0 A;  1IW0 A;  4G8U A;  1P3T A;  3MOO A;  1WZF A;  4MEC A;  1IVJ A;  1WNW A;  1N3U A;  1P3V A;  1WNX A;  4GOH A;  4G8W A;  2F2G A;  5BTQ A;  1YAK A;  3TGM A;  1J77 A;  3I8R A;  3BJD A;  3I9T A;  3CZY A;  1VGI A;  1OTW A;  2DY5 A;  2A2O A;  1RCW A;  1WOW A;  4RAJ A;  3HNH A;  1TYH A;  3DDE A;  1OYK A;  2ZVU A;  3B5O A;  2Z68 A;  4G8P A;  2QPP A;  2GM7 A;  1OZE A;  3IBX A; 
#chains in the Genus database with same CATH topology
 1TO9 A;  4G7T A;  1OTV A;  1UDD A;  4NY7 A;  3B5P A;  3RM5 A;  4WWZ A;  1J2C A;  2A2M A;  4G98 A;  1T5P A;  1DVG A;  1WOV A;  1P3U A;  1SK7 A;  1TWR A;  1ULX A;  3K4F A;  1IRM A;  1N45 A;  4FN6 A;  4WWJ A;  2E7E A;  4G99 A;  4GPF A;  1WOX A;  2RD3 A;  1OYL A;  1DVE A;  1V8X A;  4G7U A;  1TWN A;  2QCX A;  3HOK A;  1WE1 A;  1IW1 A;  1XK1 A;  3HLX A;  2Q32 A;  1UBB A;  4GPH A;  2A6B A;  1Z72 A;  1WZD A;  1NI6 A;  4WMH A;  1IX4 A;  1WNV A;  3HML A;  4G7P A;  1WWM A;  1XK0 A;  1S13 A;  1WZG A;  2GM8 A;  4G7L A;  1OZR A;  2QZC A;  1RTW A;  3MVU A;  2Q4X A;  3NO6 A;  1OZL A;  1XK3 A;  1IX3 A;  3OQL A;  1S8C A;  1YAF A;  1J02 A;  1TO9 B;  2RGZ A;  3I9U A;  1OZW A;  1XJZ A;  1XK2 A;  4GPC A;  4LQX A;  4WD4 A;  4WX0 A;  1IW0 A;  4G8U A;  1P3T A;  3MOO A;  1WZF A;  4MEC A;  1IVJ A;  1WNW A;  1N3U A;  1P3V A;  1WNX A;  4GOH A;  4G8W A;  2F2G A;  5BTQ A;  1YAK A;  3TGM A;  1J77 A;  3I8R A;  3BJD A;  3I9T A;  3CZY A;  1VGI A;  1OTW A;  2DY5 A;  2A2O A;  1RCW A;  1WOW A;  4RAJ A;  3HNH A;  1TYH A;  3DDE A;  1OYK A;  2ZVU A;  3B5O A;  2Z68 A;  4G8P A;  2QPP A;  2GM7 A;  2LCU A;  1OZE A;  3IBX A; 
#chains in the Genus database with same CATH homology
 1TO9 A;  4G7T A;  1OTV A;  1UDD A;  4NY7 A;  3B5P A;  3RM5 A;  4WWZ A;  1J2C A;  2A2M A;  4G98 A;  1T5P A;  1DVG A;  1WOV A;  1P3U A;  1SK7 A;  1TWR A;  1ULX A;  3K4F A;  1IRM A;  1N45 A;  4FN6 A;  4WWJ A;  2E7E A;  4G99 A;  4GPF A;  1WOX A;  2RD3 A;  1OYL A;  1DVE A;  1V8X A;  4G7U A;  1TWN A;  2QCX A;  3HOK A;  1WE1 A;  1IW1 A;  1XK1 A;  3HLX A;  2Q32 A;  1UBB A;  4GPH A;  2A6B A;  1Z72 A;  1WZD A;  1NI6 A;  4WMH A;  1IX4 A;  1WNV A;  3HML A;  4G7P A;  1WWM A;  1XK0 A;  1S13 A;  1WZG A;  2GM8 A;  4G7L A;  1OZR A;  2QZC A;  1RTW A;  3MVU A;  2Q4X A;  3NO6 A;  1OZL A;  1XK3 A;  1IX3 A;  3OQL A;  1S8C A;  1YAF A;  1J02 A;  1TO9 B;  2RGZ A;  3I9U A;  1OZW A;  1XJZ A;  1XK2 A;  4GPC A;  4LQX A;  4WD4 A;  4WX0 A;  1IW0 A;  4G8U A;  1P3T A;  3MOO A;  1WZF A;  4MEC A;  1IVJ A;  1WNW A;  1N3U A;  1P3V A;  1WNX A;  4GOH A;  4G8W A;  2F2G A;  5BTQ A;  1YAK A;  3TGM A;  1J77 A;  3I8R A;  3BJD A;  3I9T A;  3CZY A;  1VGI A;  1OTW A;  2DY5 A;  2A2O A;  1RCW A;  1WOW A;  4RAJ A;  3HNH A;  1TYH A;  3DDE A;  1OYK A;  2ZVU A;  3B5O A;  2Z68 A;  4G8P A;  2QPP A;  2GM7 A;  1OZE A;  3IBX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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