1UCPA

Nmr structure of the pyrin domain of human asc
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
91
structure length
91
Chain Sequence
MGRARDAILDALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFYLETYGAELTANVLRDMGLQEMAGQLQAATHQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Apoptosis-associated speck-like protein containing a CARD
publication title The death-domain fold of the ASC PYRIN domain, presenting a basis for PYRIN/PYRIN recognition
pubmed doi rcsb
source organism Homo sapiens
total genus 28
structure length 91
sequence length 91
ec nomenclature
pdb deposition date 2003-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02758 PYRIN PAAD/DAPIN/Pyrin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 1ucpA00
2OF5A 4DWNA 2BBZA 3KATA 4N1LA 2DO9A 4O6XA 2NSNA 2GF5A 1UCPA 2YU0A 1PN5A 1A1ZA 1YGOA 4UZ0A 4A2QA 3CRDA 2M5VA 2VGQA 1ICHA 2D96A 2IB1A 2KN6A 3EZQB 3EZQA 2L6AA 3YGSP 2NZ7A 4D8OA 4RHWA 1WH4A 2N1FA 2YVIA 3J6JA 2N80A 3LQRA 4P4HI 4F44A 2DBDA 4ZBWA 3MOPK 2A5YB 4M9ZA 1CY5A 3LQQA 1A1WA 4QOBA 3MOPG 3T6PA 3MOPA 4RHWE 2P1HA 2N83A 1WMGA 3CL3A 1E3YA 2MPCA 2LWDA 4EWIA 2BBRA 1CWWA 4N1JA 1E41A 2A9IA 2L9MA 4O7QA 2MS8A 1D2ZB 4P4HA 1D2ZA 4F42A 4IZ7B 4O9LA 4A2WA 4IZAB 2G7RA 2B1WA 1DGNA 2N97A 2N00A 2NAQA 2MB9A 2HM2Q 4I16A 2F1SA 1NGRA 4LWDA 4E9MA 3J63A 1WXPA 4N1KA 2DBHA 3QF2A 2LS7A 4JUPA 2KM6A 4IZ5E 2N7ZA 3YGSC 1DDFA 2YQFA 4M9SA 2MN4A 1FADA 2LWEA 2DBGA 4NQKA 2O71A 4M9XA 1Z6TA 4O9FA 4JQWA 1N3KA 2MS7A 1C15A 2DBFA 4FH0A 2YGSA 2OF5H
chains in the Genus database with same CATH superfamily
2XV9A 2OF5A 4DWNA 2BBZA 3KATA 4N1LA 2DO9A 4O6XA 2NSNA 2GF5A 1UCPA 2YU0A 1PN5A 1A1ZA 1YGOA 4UZ0A 4A2QA 3CRDA 2M5VA 2VGQA 1ICHA 2D96A 2IB1A 2KN6A 3EZQB 3EZQA 2L6AA 3YGSP 2NZ7A 4D8OA 4RHWA 1WH4A 2N1FA 2YVIA 3J6JA 2N80A 3LQRA 4P4HI 4F44A 2DBDA 4ZBWA 3MOPK 2A5YB 4M9ZA 1CY5A 2MJMA 3LQQA 1A1WA 4QOBA 3MOPG 3T6PA 3MOPA 4RHWE 2P1HA 2N83A 1WMGA 3CL3A 1E3YA 2MPCA 2LWDA 4EWIA 2BBRA 1CWWA 4N1JA 1E41A 2A9IA 2L9MA 4O7QA 2MS8A 1D2ZB 4P4HA 1D2ZA 4F42A 4IZ7B 4O9LA 4A2WA 4IZAB 2G7RA 2B1WA 1DGNA 2N97A 2N00A 2NAQA 2MB9A 2HM2Q 4I16A 2F1SA 1NGRA 4LWDA 4E9MA 3J63A 1WXPA 4N1KA 2DBHA 3QF2A 2LS7A 4JUPA 2KM6A 4IZ5E 2N7ZA 3YGSC 1DDFA 2YQFA 4M9SA 2MN4A 1FADA 2LWEA 2DBGA 4NQKA 2O71A 4M9XA 1Z6TA 4O9FA 4JQWA 1N3KA 2MS7A 1C15A 2DBFA 4FH0A 2YGSA 2OF5H
chains in the Genus database with same CATH topology
2XV9A 2OF5A 4DWNA 2BBZA 3KATA 4N1LA 2DO9A 4O6XA 2NSNA 2GF5A 1UCPA 2YU0A 1PN5A 1A1ZA 1YGOA 4UZ0A 4A2QA 3CRDA 2M5VA 2VGQA 1ICHA 2D96A 2IB1A 2KN6A 3EZQB 3EZQA 2L6AA 3YGSP 2NZ7A 4D8OA 4RHWA 1WH4A 2N1FA 2YVIA 3J6JA 2N80A 3LQRA 4P4HI 4F44A 2DBDA 4ZBWA 3MOPK 2A5YB 4M9ZA 1CY5A 2MJMA 3LQQA 1A1WA 4QOBA 3MOPG 3T6PA 3MOPA 4RHWE 2P1HA 2N83A 1WMGA 3CL3A 1E3YA 2MPCA 2LWDA 4EWIA 2BBRA 1CWWA 4N1JA 1E41A 2A9IA 2L9MA 4O7QA 2MS8A 1D2ZB 4P4HA 1D2ZA 4F42A 4IZ7B 4O9LA 4A2WA 4IZAB 2G7RA 2B1WA 1DGNA 2N97A 2N00A 2NAQA 2MB9A 2HM2Q 4I16A 2F1SA 1NGRA 4LWDA 4E9MA 3J63A 1WXPA 4N1KA 2DBHA 3QF2A 2LS7A 4JUPA 2KM6A 4IZ5E 2N7ZA 3YGSC 1DDFA 2YQFA 4M9SA 2MN4A 1FADA 2LWEA 2DBGA 4NQKA 2O71A 4M9XA 1Z6TA 4O9FA 4JQWA 1N3KA 2MS7A 1C15A 2DBFA 4FH0A 2YGSA 2OF5H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OF5 A;  4DWN A;  2BBZ A;  3KAT A;  4N1L A;  2DO9 A;  4O6X A;  2NSN A;  2GF5 A;  1UCP A;  2YU0 A;  1PN5 A;  1A1Z A;  1YGO A;  4UZ0 A;  4A2Q A;  3CRD A;  2M5V A;  2VGQ A;  1ICH A;  2D96 A;  2IB1 A;  2KN6 A;  3EZQ B;  3EZQ A;  2L6A A;  3YGS P;  2NZ7 A;  4D8O A;  4RHW A;  1WH4 A;  2N1F A;  2YVI A;  3J6J A;  2N80 A;  3LQR A;  4P4H I;  4F44 A;  2DBD A;  4ZBW A;  3MOP K;  2A5Y B;  4M9Z A;  1CY5 A;  3LQQ A;  1A1W A;  4QOB A;  3MOP G;  3T6P A;  3MOP A;  4RHW E;  2P1H A;  2N83 A;  1WMG A;  3CL3 A;  1E3Y A;  2MPC A;  2LWD A;  4EWI A;  2BBR A;  1CWW A;  4N1J A;  1E41 A;  2A9I A;  2L9M A;  4O7Q A;  2MS8 A;  1D2Z B;  4P4H A;  1D2Z A;  4F42 A;  4IZ7 B;  4O9L A;  4A2W A;  4IZA B;  2G7R A;  2B1W A;  1DGN A;  2N97 A;  2N00 A;  2NAQ A;  2MB9 A;  2HM2 Q;  4I16 A;  2F1S A;  1NGR A;  4LWD A;  4E9M A;  3J63 A;  1WXP A;  4N1K A;  2DBH A;  3QF2 A;  2LS7 A;  4JUP A;  2KM6 A;  4IZ5 E;  2N7Z A;  3YGS C;  1DDF A;  2YQF A;  4M9S A;  2MN4 A;  1FAD A;  2LWE A;  2DBG A;  4NQK A;  2O71 A;  4M9X A;  1Z6T A;  4O9F A;  4JQW A;  1N3K A;  2MS7 A;  1C15 A;  2DBF A;  4FH0 A;  2YGS A;  2OF5 H; 
#chains in the Genus database with same CATH topology
 2XV9 A;  2OF5 A;  4DWN A;  2BBZ A;  3KAT A;  4N1L A;  2DO9 A;  4O6X A;  2NSN A;  2GF5 A;  1UCP A;  2YU0 A;  1PN5 A;  1A1Z A;  1YGO A;  4UZ0 A;  4A2Q A;  3CRD A;  2M5V A;  2VGQ A;  1ICH A;  2D96 A;  2IB1 A;  2KN6 A;  3EZQ B;  3EZQ A;  2L6A A;  3YGS P;  2NZ7 A;  4D8O A;  4RHW A;  1WH4 A;  2N1F A;  2YVI A;  3J6J A;  2N80 A;  3LQR A;  4P4H I;  4F44 A;  2DBD A;  4ZBW A;  3MOP K;  2A5Y B;  4M9Z A;  1CY5 A;  2MJM A;  3LQQ A;  1A1W A;  4QOB A;  3MOP G;  3T6P A;  3MOP A;  4RHW E;  2P1H A;  2N83 A;  1WMG A;  3CL3 A;  1E3Y A;  2MPC A;  2LWD A;  4EWI A;  2BBR A;  1CWW A;  4N1J A;  1E41 A;  2A9I A;  2L9M A;  4O7Q A;  2MS8 A;  1D2Z B;  4P4H A;  1D2Z A;  4F42 A;  4IZ7 B;  4O9L A;  4A2W A;  4IZA B;  2G7R A;  2B1W A;  1DGN A;  2N97 A;  2N00 A;  2NAQ A;  2MB9 A;  2HM2 Q;  4I16 A;  2F1S A;  1NGR A;  4LWD A;  4E9M A;  3J63 A;  1WXP A;  4N1K A;  2DBH A;  3QF2 A;  2LS7 A;  4JUP A;  2KM6 A;  4IZ5 E;  2N7Z A;  3YGS C;  1DDF A;  2YQF A;  4M9S A;  2MN4 A;  1FAD A;  2LWE A;  2DBG A;  4NQK A;  2O71 A;  4M9X A;  1Z6T A;  4O9F A;  4JQW A;  1N3K A;  2MS7 A;  1C15 A;  2DBF A;  4FH0 A;  2YGS A;  2OF5 H; 
#chains in the Genus database with same CATH homology
 2XV9 A;  2OF5 A;  4DWN A;  2BBZ A;  3KAT A;  4N1L A;  2DO9 A;  4O6X A;  2NSN A;  2GF5 A;  1UCP A;  2YU0 A;  1PN5 A;  1A1Z A;  1YGO A;  4UZ0 A;  4A2Q A;  3CRD A;  2M5V A;  2VGQ A;  1ICH A;  2D96 A;  2IB1 A;  2KN6 A;  3EZQ B;  3EZQ A;  2L6A A;  3YGS P;  2NZ7 A;  4D8O A;  4RHW A;  1WH4 A;  2N1F A;  2YVI A;  3J6J A;  2N80 A;  3LQR A;  4P4H I;  4F44 A;  2DBD A;  4ZBW A;  3MOP K;  2A5Y B;  4M9Z A;  1CY5 A;  2MJM A;  3LQQ A;  1A1W A;  4QOB A;  3MOP G;  3T6P A;  3MOP A;  4RHW E;  2P1H A;  2N83 A;  1WMG A;  3CL3 A;  1E3Y A;  2MPC A;  2LWD A;  4EWI A;  2BBR A;  1CWW A;  4N1J A;  1E41 A;  2A9I A;  2L9M A;  4O7Q A;  2MS8 A;  1D2Z B;  4P4H A;  1D2Z A;  4F42 A;  4IZ7 B;  4O9L A;  4A2W A;  4IZA B;  2G7R A;  2B1W A;  1DGN A;  2N97 A;  2N00 A;  2NAQ A;  2MB9 A;  2HM2 Q;  4I16 A;  2F1S A;  1NGR A;  4LWD A;  4E9M A;  3J63 A;  1WXP A;  4N1K A;  2DBH A;  3QF2 A;  2LS7 A;  4JUP A;  2KM6 A;  4IZ5 E;  2N7Z A;  3YGS C;  1DDF A;  2YQF A;  4M9S A;  2MN4 A;  1FAD A;  2LWE A;  2DBG A;  4NQK A;  2O71 A;  4M9X A;  1Z6T A;  4O9F A;  4JQW A;  1N3K A;  2MS7 A;  1C15 A;  2DBF A;  4FH0 A;  2YGS A;  2OF5 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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