1UCSA

Type iii antifreeze protein rd1 from an antarctic eel pout
Total Genus 14
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
64
structure length
64
Chain Sequence
NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPKLVGMQVNRAVPLGTTLMPDMVKNYE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Antifreeze protein
molecule keywords Antifreeze peptide RD1
publication title The refined crystal structure of an eel pout type III antifreeze protein RD1 at 0.62-(angstrom) resolution reveals structural microheterogeneity of protein and solvation
pubmed rcsb
total genus 14
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2003-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08666 SAF SAF domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 1ucsA00
1UCSA 4IPJA 2JIAA 1XUUA 1MSIA 3FRNA 1WVOA 1AMEA 3CM4A 1KDFA 2LX2A 1KDEA 2WQPA 1GZIA 1MSJA 4UR4A 2ZDRA 1OPSA 3RDNA 7MSIA 1JABA 4NY6A 1HG7A 3QF6A 4MSIA 2AMEA 4IPIA 6MSIA 1EKLA 1B7JA 1VLIA 2LX3A 2MSIA 8MSIA 3MSIA 9AMEA 5MSIA 4UR6A 1C8AA 3G8RA 1B7KA 8AMEA 4AMEA 1XUZA 1C89A 2SPGA 3AMEA 9MSIA 2MSJA 6AMEA 7AMEA 3NLAA 1B7IA
chains in the Genus database with same CATH superfamily
1UCSA 4IPJA 2JIAA 1XUUA 1MSIA 3FRNA 1WVOA 1AMEA 3CM4A 1KDFA 2LX2A 1KDEA 2WQPA 1GZIA 1MSJA 4UR4A 2ZDRA 1OPSA 3RDNA 7MSIA 1JABA 4NY6A 1HG7A 3QF6A 4MSIA 2AMEA 4IPIA 6MSIA 1EKLA 1B7JA 1VLIA 2LX3A 2MSIA 8MSIA 3MSIA 9AMEA 5MSIA 4UR6A 1C8AA 3G8RA 1B7KA 3NLAA 8AMEA 4AMEA 1XUZA 1C89A 2SPGA 3AMEA 9MSIA 2MSJA 6AMEA 3LAZA 7AMEA 3K3SA 1B7IA
chains in the Genus database with same CATH topology
1UCSA 4IPJA 2JIAA 1XUUA 1MSIA 3FRNA 1WVOA 1AMEA 3CM4A 1KDFA 2LX2A 1KDEA 2WQPA 1GZIA 1MSJA 4UR4A 2ZDRA 1OPSA 3RDNA 7MSIA 1JABA 4NY6A 1HG7A 3QF6A 4MSIA 2AMEA 4IPIA 6MSIA 1EKLA 1B7JA 1VLIA 2LX3A 2MSIA 8MSIA 3MSIA 9AMEA 5MSIA 4UR6A 1C8AA 3G8RA 1B7KA 8AMEA 4AMEA 1XUZA 1C89A 2SPGA 3AMEA 9MSIA 2MSJA 6AMEA 7AMEA 3NLAA 1B7IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UCS A;  4IPJ A;  2JIA A;  1XUU A;  1MSI A;  3FRN A;  1WVO A;  1AME A;  3CM4 A;  1KDF A;  2LX2 A;  1KDE A;  2WQP A;  1GZI A;  1MSJ A;  4UR4 A;  2ZDR A;  1OPS A;  3RDN A;  7MSI A;  1JAB A;  4NY6 A;  1HG7 A;  3QF6 A;  4MSI A;  2AME A;  4IPI A;  6MSI A;  1EKL A;  1B7J A;  1VLI A;  2LX3 A;  2MSI A;  8MSI A;  3MSI A;  9AME A;  5MSI A;  4UR6 A;  1C8A A;  3G8R A;  1B7K A;  8AME A;  4AME A;  1XUZ A;  1C89 A;  2SPG A;  3AME A;  9MSI A;  2MSJ A;  6AME A;  7AME A;  3NLA A;  1B7I A; 
#chains in the Genus database with same CATH topology
 1UCS A;  4IPJ A;  2JIA A;  1XUU A;  1MSI A;  3FRN A;  1WVO A;  1AME A;  3CM4 A;  1KDF A;  2LX2 A;  1KDE A;  2WQP A;  1GZI A;  1MSJ A;  4UR4 A;  2ZDR A;  1OPS A;  3RDN A;  7MSI A;  1JAB A;  4NY6 A;  1HG7 A;  3QF6 A;  4MSI A;  2AME A;  4IPI A;  6MSI A;  1EKL A;  1B7J A;  1VLI A;  2LX3 A;  2MSI A;  8MSI A;  3MSI A;  9AME A;  5MSI A;  4UR6 A;  1C8A A;  3G8R A;  1B7K A;  3NLA A;  8AME A;  4AME A;  1XUZ A;  1C89 A;  2SPG A;  3AME A;  9MSI A;  2MSJ A;  6AME A;  3LAZ A;  7AME A;  3K3S A;  1B7I A; 
#chains in the Genus database with same CATH homology
 1UCS A;  4IPJ A;  2JIA A;  1XUU A;  1MSI A;  3FRN A;  1WVO A;  1AME A;  3CM4 A;  1KDF A;  2LX2 A;  1KDE A;  2WQP A;  1GZI A;  1MSJ A;  4UR4 A;  2ZDR A;  1OPS A;  3RDN A;  7MSI A;  1JAB A;  4NY6 A;  1HG7 A;  3QF6 A;  4MSI A;  2AME A;  4IPI A;  6MSI A;  1EKL A;  1B7J A;  1VLI A;  2LX3 A;  2MSI A;  8MSI A;  3MSI A;  9AME A;  5MSI A;  4UR6 A;  1C8A A;  3G8R A;  1B7K A;  8AME A;  4AME A;  1XUZ A;  1C89 A;  2SPG A;  3AME A;  9MSI A;  2MSJ A;  6AME A;  7AME A;  3NLA A;  1B7I A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...