1UD9A

Crystal structure of proliferating cell nuclear antigen (pcna) homolog from sulfolobus tokodaii
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
245
structure length
242
Chain Sequence
AHIVYDDVRDLKAIIQALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLKAAKRKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEVLPPEVPLEFDIKATINASGLKNAIGEIAEVADTLLISGNEEKVVVKGEGENKVEVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGGGKVTYLLAPKLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii
rcsb
molecule keywords DNA polymerase sliding clamp A
molecule tags Dna binding protein
source organism Sulfolobus tokodaii
total genus 58
structure length 242
sequence length 245
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2003-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 1ud9A00
1RXZA 3P83A 1GE8A 3FDSC 3U60F 3A1JA 5IWDA 5IXAA 2Z0LA 3AIXB 5DAIA 2IX2C 3HSLX 3LX1A 5E0UA 3K4XA 1UL1A 1PLQA 5E0VA 1ISQA 1RWZA 2IZOC 1UD9A 1VYJA 2ZVLA 3AIXA 1IZ5A 3GGRB 3LX2A 5E0TA 2IX2B 3P91A 1T6LA 2AVTA 5IY4A 3FDSD 5H0TA 3GGRC 4L6PA 4L60A 2IZOB 4TR6A 3GGRA 4YHRA 4RJFA 3V62B 2IX2A 1RXMA 1YYPA 3U61F 3G65B 2ZVKA 5CFKA 2IO4B 5DA7A 2ZVWA 3G65C 1U7BA 2IJXA 3V60B 3P87A 4ZTDA 4CS5A 5JNED 3G65A 2ZVMA 4HK1A 4D2GA 2NTIB 2IO4A 3U5ZF 3TBLA 3VKXA 1PLRA 1U76A 2HIIB 2NTIC 2AWAA 3V61B 3WGWA 3F1WA 1DMLA 2HIKB 2NTIA 5HACA 2HIIC 2ZVVA 3AIZC 3A2FB 3GPMA 3GPNA 1IZ4A 5A6DA 1VYMA 1B77A 3IFVA 3A1JB 1CZDA 1B8HA 3HI8A 2HIIA 2HIKC 5AUJA 1SXJF 1W60A 3AIZA 5B7OA 1AXCA 3A1JC 2HIKA 3I2MX 2OD8A
chains in the Genus database with same CATH superfamily
1RXZA 3P83A 1GE8A 3FDSC 3U60F 3A1JA 5IWDA 5IXAA 2Z0LA 3AIXB 5DAIA 2IX2C 3HSLX 3LX1A 5E0UA 3K4XA 1UL1A 1PLQA 5E0VA 1ISQA 1RWZA 2IZOC 1UD9A 1VYJA 2ZVLA 3AIXA 1IZ5A 3GGRB 3LX2A 5E0TA 2IX2B 3P91A 1T6LA 2AVTA 5IY4A 3FDSD 5H0TA 3GGRC 4L6PA 4L60A 2IZOB 4TR6A 3GGRA 4YHRA 4RJFA 3V62B 2IX2A 1RXMA 1YYPA 3U61F 3G65B 2ZVKA 5CFKA 2IO4B 5DA7A 2ZVWA 3G65C 1U7BA 2IJXA 3V60B 3P87A 4ZTDA 4CS5A 5JNED 3G65A 2ZVMA 4HK1A 4D2GA 2NTIB 2IO4A 3U5ZF 3TBLA 3VKXA 1PLRA 1U76A 2HIIB 2NTIC 2AWAA 3V61B 3WGWA 3F1WA 1DMLA 2HIKB 2NTIA 5HACA 2HIIC 2ZVVA 3AIZC 3A2FB 3GPMA 3GPNA 1IZ4A 5A6DA 1VYMA 1B77A 3IFVA 3A1JB 1CZDA 1B8HA 3HI8A 2HIIA 2HIKC 5AUJA 1SXJF 1W60A 3AIZA 5B7OA 1AXCA 3A1JC 2HIKA 3I2MX 2OD8A
chains in the Genus database with same CATH topology
1RXZA 3P83A 1GE8A 3FDSC 3U60F 3A1JA 5IWDA 5IXAA 2Z0LA 3AIXB 5DAIA 2IX2C 3HSLX 3LX1A 5E0UA 3K4XA 1UL1A 1PLQA 5E0VA 1ISQA 1RWZA 2IZOC 1UD9A 1VYJA 2ZVLA 3AIXA 1IZ5A 3GGRB 3LX2A 5E0TA 2IX2B 3P91A 1T6LA 2AVTA 5IY4A 3FDSD 5H0TA 3GGRC 4L6PA 4L60A 2IZOB 4TR6A 3GGRA 4YHRA 4RJFA 3V62B 2IX2A 1RXMA 1YYPA 3U61F 3G65B 2ZVKA 5CFKA 2IO4B 5DA7A 2ZVWA 3G65C 1U7BA 2IJXA 3V60B 3P87A 4ZTDA 4CS5A 5JNED 3G65A 2ZVMA 4HK1A 4D2GA 2NTIB 2IO4A 3U5ZF 3TBLA 3VKXA 1PLRA 1U76A 2HIIB 2NTIC 2AWAA 3V61B 3WGWA 3F1WA 1DMLA 2HIKB 2NTIA 5HACA 2HIIC 2ZVVA 3AIZC 3A2FB 3GPMA 3GPNA 1IZ4A 5A6DA 1VYMA 1B77A 3IFVA 3A1JB 1CZDA 1B8HA 3HI8A 2HIIA 2HIKC 5AUJA 1SXJF 1W60A 3AIZA 5B7OA 1AXCA 3A1JC 2HIKA 3I2MX 2OD8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RXZ A;  3P83 A;  1GE8 A;  3FDS C;  3U60 F;  3A1J A;  5IWD A;  5IXA A;  2Z0L A;  3AIX B;  5DAI A;  2IX2 C;  3HSL X;  3LX1 A;  5E0U A;  3K4X A;  1UL1 A;  1PLQ A;  5E0V A;  1ISQ A;  1RWZ A;  2IZO C;  1UD9 A;  1VYJ A;  2ZVL A;  3AIX A;  1IZ5 A;  3GGR B;  3LX2 A;  5E0T A;  2IX2 B;  3P91 A;  1T6L A;  2AVT A;  5IY4 A;  3FDS D;  5H0T A;  3GGR C;  4L6P A;  4L60 A;  2IZO B;  4TR6 A;  3GGR A;  4YHR A;  4RJF A;  3V62 B;  2IX2 A;  1RXM A;  1YYP A;  3U61 F;  3G65 B;  2ZVK A;  5CFK A;  2IO4 B;  5DA7 A;  2ZVW A;  3G65 C;  1U7B A;  2IJX A;  3V60 B;  3P87 A;  4ZTD A;  4CS5 A;  5JNE D;  3G65 A;  2ZVM A;  4HK1 A;  4D2G A;  2NTI B;  2IO4 A;  3U5Z F;  3TBL A;  3VKX A;  1PLR A;  1U76 A;  2HII B;  2NTI C;  2AWA A;  3V61 B;  3WGW A;  3F1W A;  1DML A;  2HIK B;  2NTI A;  5HAC A;  2HII C;  2ZVV A;  3AIZ C;  3A2F B;  3GPM A;  3GPN A;  1IZ4 A;  5A6D A;  1VYM A;  1B77 A;  3IFV A;  3A1J B;  1CZD A;  1B8H A;  3HI8 A;  2HII A;  2HIK C;  5AUJ A;  1SXJ F;  1W60 A;  3AIZ A;  5B7O A;  1AXC A;  3A1J C;  2HIK A;  3I2M X;  2OD8 A; 
#chains in the Genus database with same CATH topology
 1RXZ A;  3P83 A;  1GE8 A;  3FDS C;  3U60 F;  3A1J A;  5IWD A;  5IXA A;  2Z0L A;  3AIX B;  5DAI A;  2IX2 C;  3HSL X;  3LX1 A;  5E0U A;  3K4X A;  1UL1 A;  1PLQ A;  5E0V A;  1ISQ A;  1RWZ A;  2IZO C;  1UD9 A;  1VYJ A;  2ZVL A;  3AIX A;  1IZ5 A;  3GGR B;  3LX2 A;  5E0T A;  2IX2 B;  3P91 A;  1T6L A;  2AVT A;  5IY4 A;  3FDS D;  5H0T A;  3GGR C;  4L6P A;  4L60 A;  2IZO B;  4TR6 A;  3GGR A;  4YHR A;  4RJF A;  3V62 B;  2IX2 A;  1RXM A;  1YYP A;  3U61 F;  3G65 B;  2ZVK A;  5CFK A;  2IO4 B;  5DA7 A;  2ZVW A;  3G65 C;  1U7B A;  2IJX A;  3V60 B;  3P87 A;  4ZTD A;  4CS5 A;  5JNE D;  3G65 A;  2ZVM A;  4HK1 A;  4D2G A;  2NTI B;  2IO4 A;  3U5Z F;  3TBL A;  3VKX A;  1PLR A;  1U76 A;  2HII B;  2NTI C;  2AWA A;  3V61 B;  3WGW A;  3F1W A;  1DML A;  2HIK B;  2NTI A;  5HAC A;  2HII C;  2ZVV A;  3AIZ C;  3A2F B;  3GPM A;  3GPN A;  1IZ4 A;  5A6D A;  1VYM A;  1B77 A;  3IFV A;  3A1J B;  1CZD A;  1B8H A;  3HI8 A;  2HII A;  2HIK C;  5AUJ A;  1SXJ F;  1W60 A;  3AIZ A;  5B7O A;  1AXC A;  3A1J C;  2HIK A;  3I2M X;  2OD8 A; 
#chains in the Genus database with same CATH homology
 1RXZ A;  3P83 A;  1GE8 A;  3FDS C;  3U60 F;  3A1J A;  5IWD A;  5IXA A;  2Z0L A;  3AIX B;  5DAI A;  2IX2 C;  3HSL X;  3LX1 A;  5E0U A;  3K4X A;  1UL1 A;  1PLQ A;  5E0V A;  1ISQ A;  1RWZ A;  2IZO C;  1UD9 A;  1VYJ A;  2ZVL A;  3AIX A;  1IZ5 A;  3GGR B;  3LX2 A;  5E0T A;  2IX2 B;  3P91 A;  1T6L A;  2AVT A;  5IY4 A;  3FDS D;  5H0T A;  3GGR C;  4L6P A;  4L60 A;  2IZO B;  4TR6 A;  3GGR A;  4YHR A;  4RJF A;  3V62 B;  2IX2 A;  1RXM A;  1YYP A;  3U61 F;  3G65 B;  2ZVK A;  5CFK A;  2IO4 B;  5DA7 A;  2ZVW A;  3G65 C;  1U7B A;  2IJX A;  3V60 B;  3P87 A;  4ZTD A;  4CS5 A;  5JNE D;  3G65 A;  2ZVM A;  4HK1 A;  4D2G A;  2NTI B;  2IO4 A;  3U5Z F;  3TBL A;  3VKX A;  1PLR A;  1U76 A;  2HII B;  2NTI C;  2AWA A;  3V61 B;  3WGW A;  3F1W A;  1DML A;  2HIK B;  2NTI A;  5HAC A;  2HII C;  2ZVV A;  3AIZ C;  3A2F B;  3GPM A;  3GPN A;  1IZ4 A;  5A6D A;  1VYM A;  1B77 A;  3IFV A;  3A1J B;  1CZD A;  1B8H A;  3HI8 A;  2HII A;  2HIK C;  5AUJ A;  1SXJ F;  1W60 A;  3AIZ A;  5B7O A;  1AXC A;  3A1J C;  2HIK A;  3I2M X;  2OD8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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