1UF7A

Crystal structure of c171a/v236a mutant of n-carbamyl-d-amino acid amidohydrolase complexed with n-carbamyl-d-valine
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
303
structure length
303
Chain Sequence
TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords N-carbamyl-D-amino acid amidohydrolase
publication title Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase
rcsb
source organism Agrobacterium sp.
total genus 103
structure length 303
sequence length 303
chains with identical sequence B
ec nomenclature ec 3.5.1.77: N-carbamoyl-D-amino-acid hydrolase.
pdb deposition date 2003-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 1uf7A00
4GYNA 4HG5A 2VHIA 4HG3A 3KLCA 2VHHA 4GYLA 2E2LA 1F89A 3SDBA 2E11A 3SEZA 2E2KA 5H8JA 5H8LA 4IZWA 4H5UA 4IZUA 5H8IA 3SEQA 4LF0A 4CYYA 5JQNA 3WUYA 2GGLA 5KHAA 1UF7A 4CYFA 1EMSA 1FO6A 3P8KA 4KZFA 4IZSA 1ERZA 2UXYA 5H8KA 3HKXA 1UF5A 4CYGA 3N05A 4IZVA 3IW3A 3DLAA 4IZTA 2DYVA 3SZGA 2DYUA 3KI8A 3ILVA 2GGKA 2PLQA 1J31A 4HGDA 4F4HA 1UF4A 2W1VA 3IVZA 3SYTA 1UF8A
chains in the Genus database with same CATH superfamily
4GYNA 4HG5A 2VHIA 4HG3A 3KLCA 2VHHA 4GYLA 2E2LA 1F89A 3SDBA 2E11A 3SEZA 2E2KA 5H8JA 5H8LA 4IZWA 4H5UA 4IZUA 5H8IA 3SEQA 4LF0A 4CYYA 5JQNA 3WUYA 2GGLA 5KHAA 1UF7A 4CYFA 1EMSA 1FO6A 3P8KA 4KZFA 4IZSA 1ERZA 2UXYA 5H8KA 3HKXA 1UF5A 4CYGA 3N05A 4IZVA 3IW3A 3DLAA 4IZTA 2DYVA 3SZGA 2DYUA 3KI8A 3ILVA 2GGKA 2PLQA 1J31A 4HGDA 4F4HA 1UF4A 2W1VA 3IVZA 3SYTA 1UF8A
chains in the Genus database with same CATH topology
4GYNA 4HG5A 2VHIA 4HG3A 3KLCA 2VHHA 4GYLA 2E2LA 1F89A 3SDBA 2E11A 3SEZA 2E2KA 5H8JA 5H8LA 4IZWA 4H5UA 4IZUA 5H8IA 3SEQA 4LF0A 4CYYA 5JQNA 3WUYA 2GGLA 5KHAA 1UF7A 4CYFA 1EMSA 1FO6A 3P8KA 4KZFA 4IZSA 1ERZA 2UXYA 5H8KA 3HKXA 1UF5A 4CYGA 3N05A 4IZVA 3IW3A 3DLAA 4IZTA 2DYVA 3SZGA 2DYUA 3KI8A 3ILVA 2GGKA 2PLQA 1J31A 4HGDA 4F4HA 1UF4A 2W1VA 3IVZA 3SYTA 1UF8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GYN A;  4HG5 A;  2VHI A;  4HG3 A;  3KLC A;  2VHH A;  4GYL A;  2E2L A;  1F89 A;  3SDB A;  2E11 A;  3SEZ A;  2E2K A;  5H8J A;  5H8L A;  4IZW A;  4H5U A;  4IZU A;  5H8I A;  3SEQ A;  4LF0 A;  4CYY A;  5JQN A;  3WUY A;  2GGL A;  5KHA A;  1UF7 A;  4CYF A;  1EMS A;  1FO6 A;  3P8K A;  4KZF A;  4IZS A;  1ERZ A;  2UXY A;  5H8K A;  3HKX A;  1UF5 A;  4CYG A;  3N05 A;  4IZV A;  3IW3 A;  3DLA A;  4IZT A;  2DYV A;  3SZG A;  2DYU A;  3KI8 A;  3ILV A;  2GGK A;  2PLQ A;  1J31 A;  4HGD A;  4F4H A;  1UF4 A;  2W1V A;  3IVZ A;  3SYT A;  1UF8 A; 
#chains in the Genus database with same CATH topology
 4GYN A;  4HG5 A;  2VHI A;  4HG3 A;  3KLC A;  2VHH A;  4GYL A;  2E2L A;  1F89 A;  3SDB A;  2E11 A;  3SEZ A;  2E2K A;  5H8J A;  5H8L A;  4IZW A;  4H5U A;  4IZU A;  5H8I A;  3SEQ A;  4LF0 A;  4CYY A;  5JQN A;  3WUY A;  2GGL A;  5KHA A;  1UF7 A;  4CYF A;  1EMS A;  1FO6 A;  3P8K A;  4KZF A;  4IZS A;  1ERZ A;  2UXY A;  5H8K A;  3HKX A;  1UF5 A;  4CYG A;  3N05 A;  4IZV A;  3IW3 A;  3DLA A;  4IZT A;  2DYV A;  3SZG A;  2DYU A;  3KI8 A;  3ILV A;  2GGK A;  2PLQ A;  1J31 A;  4HGD A;  4F4H A;  1UF4 A;  2W1V A;  3IVZ A;  3SYT A;  1UF8 A; 
#chains in the Genus database with same CATH homology
 4GYN A;  4HG5 A;  2VHI A;  4HG3 A;  3KLC A;  2VHH A;  4GYL A;  2E2L A;  1F89 A;  3SDB A;  2E11 A;  3SEZ A;  2E2K A;  5H8J A;  5H8L A;  4IZW A;  4H5U A;  4IZU A;  5H8I A;  3SEQ A;  4LF0 A;  4CYY A;  5JQN A;  3WUY A;  2GGL A;  5KHA A;  1UF7 A;  4CYF A;  1EMS A;  1FO6 A;  3P8K A;  4KZF A;  4IZS A;  1ERZ A;  2UXY A;  5H8K A;  3HKX A;  1UF5 A;  4CYG A;  3N05 A;  4IZV A;  3IW3 A;  3DLA A;  4IZT A;  2DYV A;  3SZG A;  2DYU A;  3KI8 A;  3ILV A;  2GGK A;  2PLQ A;  1J31 A;  4HGD A;  4F4H A;  1UF4 A;  2W1V A;  3IVZ A;  3SYT A;  1UF8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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