1UGYC

Crystal structure of jacalin- mellibiose (gal-alpha(1-6)-glc) complex
Total Genus 31
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
publication title Structural Basis of the Carbohydrate Specificities of Jacalin: An X-ray and Modeling Study
pubmed doi rcsb
total genus 31
structure length 133
sequence length 133
chains with identical sequence E
ec nomenclature
pdb deposition date 2003-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1ugyC00
2NU5A 1UH0A 1TP8A 5EXGA 4R6RA 2GUDA 3AQGA 4AKDA 1WS4A 1J4TA 5JM1A 4PIKA 3LL1A 3LL2A 1ZGRA 3LL0A 2HYQA 3MIUA 4R6PA 2JZ4A 1C3KA 1UGYA 1UGWA 1JACA 3VY6A 4WOGA 1XEZA 2HYRA 4DDNA 4AK4A 1WS5A 2BMZA 3O44A 5J50A 3R52A 1OUWA 2GUXA 3LLYA 4PIFA 1XXQA 1KUJA 5J4TA 2GUEA 5BN6E 3WOBA 4AKBA 1UH1A 1JOTA 1X1VA 1ZGSA 1UGYC 1UGWC 1KU8A 1VBPA 4AKCA 3VY7A 1C3NA 2BMYA 1TOQA 2NUOA 3LKYA 2GTYA 4MQ0A 5J4XA 3VZEA 3VZGA 4R6QA 1WS4C 1J4UA 1M26A 5J51A 1J4SA 1WS5C 2GUCA 3LLZA 4R6OA 3MIVA 5AV7A 4PIUA 3MITA 3R50A 1C3MA 3LM1A 1PXDA 4PITA 3WOCA 2BN0A 1XXRA 1VBOA 3P8SA 3APAA 4GX7A 3VZFA 3R51A 1UGXA 4R6NA
chains in the Genus database with same CATH superfamily
2NU5A 1UH0A 1CIYA 1TP8A 2QP2A 5EXGA 4R6RA 2GUDA 3AQGA 4AKDA 1WS4A 1J4TA 5JM1A 4PIKA 3LL1A 4ARYA 4QX0A 3LL2A 1ZGRA 1I5PA 3LL0A 2HYQA 3MIUA 4R6PA 2JZ4A 1C3KA 4QX2A 1UGYA 1UGWA 1JACA 4D8MA 3VY6A 4WOGA 1JI6A 1XEZA 2HYRA 4DDNA 4AK4A 1VMOA 1WS5A 2BMZA 3O44A 1W99A 5J50A 3R52A 1OUWA 2GUXA 3LLYA 4PIFA 1XXQA 1KUJA 5J4TA 2GUEA 5BN6E 3WOBA 3EB7A 4AKBA 2C9KA 1UH1A 1JOTA 1X1VA 1ZGSA 1UGYC 1UGWC 1KU8A 1VBPA 4AKCA 3VY7A 1C3NA 2BMYA 1TOQA 2NUOA 4ARXA 3LKYA 2GTYA 4MQ0A 5J4XA 3VZEA 3VZGA 4R6QA 1WS4C 1J4UA 1M26A 5J51A 1J4SA 1WS5C 2GUCA 3LLZA 4R6OA 3MIVA 5AV7A 4PIUA 3MITA 4QX1A 3R50A 1C3MA 3LM1A 1PXDA 4PITA 3WOCA 1DLCA 2BN0A 1XXRA 1VBOA 3P8SA 3APAA 4GX7A 3VZFA 3TOWA 3R51A 4MOAA 1UGXA 4QX3A 4W8JA 4R6NA
chains in the Genus database with same CATH topology
2NU5A 1UH0A 1TP8A 5EXGA 4R6RA 2GUDA 3AQGA 4AKDA 1WS4A 1J4TA 5JM1A 4PIKA 3LL1A 3LL2A 1ZGRA 3LL0A 2HYQA 3MIUA 4R6PA 2JZ4A 1C3KA 1UGYA 1UGWA 1JACA 3VY6A 4WOGA 1XEZA 2HYRA 4DDNA 4AK4A 1WS5A 2BMZA 3O44A 5J50A 3R52A 1OUWA 2GUXA 3LLYA 4PIFA 1XXQA 1KUJA 5J4TA 2GUEA 5BN6E 3WOBA 4AKBA 1UH1A 1JOTA 1X1VA 1ZGSA 1UGYC 1UGWC 1KU8A 1VBPA 4AKCA 3VY7A 1C3NA 2BMYA 1TOQA 2NUOA 3LKYA 2GTYA 4MQ0A 5J4XA 3VZEA 3VZGA 4R6QA 1WS4C 1J4UA 1M26A 5J51A 1J4SA 1WS5C 2GUCA 3LLZA 4R6OA 3MIVA 5AV7A 4PIUA 3MITA 3R50A 1C3MA 3LM1A 1PXDA 4PITA 3WOCA 2BN0A 1XXRA 1VBOA 3P8SA 3APAA 4GX7A 3VZFA 3R51A 1UGXA 4R6NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NU5 A;  1UH0 A;  1TP8 A;  5EXG A;  4R6R A;  2GUD A;  3AQG A;  4AKD A;  1WS4 A;  1J4T A;  5JM1 A;  4PIK A;  3LL1 A;  3LL2 A;  1ZGR A;  3LL0 A;  2HYQ A;  3MIU A;  4R6P A;  2JZ4 A;  1C3K A;  1UGY A;  1UGW A;  1JAC A;  3VY6 A;  4WOG A;  1XEZ A;  2HYR A;  4DDN A;  4AK4 A;  1WS5 A;  2BMZ A;  3O44 A;  5J50 A;  3R52 A;  1OUW A;  2GUX A;  3LLY A;  4PIF A;  1XXQ A;  1KUJ A;  5J4T A;  2GUE A;  5BN6 E;  3WOB A;  4AKB A;  1UH1 A;  1JOT A;  1X1V A;  1ZGS A;  1UGY C;  1UGW C;  1KU8 A;  1VBP A;  4AKC A;  3VY7 A;  1C3N A;  2BMY A;  1TOQ A;  2NUO A;  3LKY A;  2GTY A;  4MQ0 A;  5J4X A;  3VZE A;  3VZG A;  4R6Q A;  1WS4 C;  1J4U A;  1M26 A;  5J51 A;  1J4S A;  1WS5 C;  2GUC A;  3LLZ A;  4R6O A;  3MIV A;  5AV7 A;  4PIU A;  3MIT A;  3R50 A;  1C3M A;  3LM1 A;  1PXD A;  4PIT A;  3WOC A;  2BN0 A;  1XXR A;  1VBO A;  3P8S A;  3APA A;  4GX7 A;  3VZF A;  3R51 A;  1UGX A;  4R6N A; 
#chains in the Genus database with same CATH topology
 2NU5 A;  1UH0 A;  1CIY A;  1TP8 A;  2QP2 A;  5EXG A;  4R6R A;  2GUD A;  3AQG A;  4AKD A;  1WS4 A;  1J4T A;  5JM1 A;  4PIK A;  3LL1 A;  4ARY A;  4QX0 A;  3LL2 A;  1ZGR A;  1I5P A;  3LL0 A;  2HYQ A;  3MIU A;  4R6P A;  2JZ4 A;  1C3K A;  4QX2 A;  1UGY A;  1UGW A;  1JAC A;  4D8M A;  3VY6 A;  4WOG A;  1JI6 A;  1XEZ A;  2HYR A;  4DDN A;  4AK4 A;  1VMO A;  1WS5 A;  2BMZ A;  3O44 A;  1W99 A;  5J50 A;  3R52 A;  1OUW A;  2GUX A;  3LLY A;  4PIF A;  1XXQ A;  1KUJ A;  5J4T A;  2GUE A;  5BN6 E;  3WOB A;  3EB7 A;  4AKB A;  2C9K A;  1UH1 A;  1JOT A;  1X1V A;  1ZGS A;  1UGY C;  1UGW C;  1KU8 A;  1VBP A;  4AKC A;  3VY7 A;  1C3N A;  2BMY A;  1TOQ A;  2NUO A;  4ARX A;  3LKY A;  2GTY A;  4MQ0 A;  5J4X A;  3VZE A;  3VZG A;  4R6Q A;  1WS4 C;  1J4U A;  1M26 A;  5J51 A;  1J4S A;  1WS5 C;  2GUC A;  3LLZ A;  4R6O A;  3MIV A;  5AV7 A;  4PIU A;  3MIT A;  4QX1 A;  3R50 A;  1C3M A;  3LM1 A;  1PXD A;  4PIT A;  3WOC A;  1DLC A;  2BN0 A;  1XXR A;  1VBO A;  3P8S A;  3APA A;  4GX7 A;  3VZF A;  3TOW A;  3R51 A;  4MOA A;  1UGX A;  4QX3 A;  4W8J A;  4R6N A; 
#chains in the Genus database with same CATH homology
 2NU5 A;  1UH0 A;  1TP8 A;  5EXG A;  4R6R A;  2GUD A;  3AQG A;  4AKD A;  1WS4 A;  1J4T A;  5JM1 A;  4PIK A;  3LL1 A;  3LL2 A;  1ZGR A;  3LL0 A;  2HYQ A;  3MIU A;  4R6P A;  2JZ4 A;  1C3K A;  1UGY A;  1UGW A;  1JAC A;  3VY6 A;  4WOG A;  1XEZ A;  2HYR A;  4DDN A;  4AK4 A;  1WS5 A;  2BMZ A;  3O44 A;  5J50 A;  3R52 A;  1OUW A;  2GUX A;  3LLY A;  4PIF A;  1XXQ A;  1KUJ A;  5J4T A;  2GUE A;  5BN6 E;  3WOB A;  4AKB A;  1UH1 A;  1JOT A;  1X1V A;  1ZGS A;  1UGY C;  1UGW C;  1KU8 A;  1VBP A;  4AKC A;  3VY7 A;  1C3N A;  2BMY A;  1TOQ A;  2NUO A;  3LKY A;  2GTY A;  4MQ0 A;  5J4X A;  3VZE A;  3VZG A;  4R6Q A;  1WS4 C;  1J4U A;  1M26 A;  5J51 A;  1J4S A;  1WS5 C;  2GUC A;  3LLZ A;  4R6O A;  3MIV A;  5AV7 A;  4PIU A;  3MIT A;  3R50 A;  1C3M A;  3LM1 A;  1PXD A;  4PIT A;  3WOC A;  2BN0 A;  1XXR A;  1VBO A;  3P8S A;  3APA A;  4GX7 A;  3VZF A;  3R51 A;  1UGX A;  4R6N A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...