1UJRA

Solution structure of wwe domain in bab28015
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
110
structure length
110
Chain Sequence
PSSGSSGFLDKPTLLSPEELKAASRGNGEYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein AK012080
publication title Solution structure of WWE domain in BAB28015
rcsb
source organism Mus musculus
total genus 13
structure length 110
sequence length 110
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2003-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02825 WWE WWE domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.720.50 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 1ujrA01
2RSFA 2DK6A 1UJRA 2A90A 1X4RA 3V3LA
chains in the Genus database with same CATH superfamily
4AKXB 2X5HA 2RSFA 4GZ6A 4GYWA 1X4RA 2FJBB 4N3CA 2FFGA 5AOXA 3PE4A 1E8OA 4UYKA 5AOXB 1E8OB 4UYKB 2DK6A 1JNZB 1JNRB 2KJZA 2W9JA 1914A 4AY5A 3VCXA 4UYJA 4GZ5A 2FJAB 3V3LA 4UYJB 1UJRA 3ITWA 3PE3A 4GZ3A 4AY6A 4XI9A 1U7IA 2FJDB 2X5TA 4N3AA 5BNWA 2X5GA 2FJEB 3OMSA 3BT3A 4CDRA 1QMOE 2A90A 4N39A 3TAXA 3TU3B 2K4NA 3SK1A 4XIFA 3GYXB 5C1DA 4GYYA 4N3BA
chains in the Genus database with same CATH topology
4AKXB 2X5HA 2RSFA 4GZ6A 4GYWA 1X4RA 2FJBB 4N3CA 2FFGA 5AOXA 3PE4A 1E8OA 4UYKA 5AOXB 1E8OB 4UYKB 2DK6A 1JNZB 1JNRB 2KJZA 2W9JA 1914A 4AY5A 3VCXA 4UYJA 4GZ5A 2FJAB 3V3LA 4UYJB 1UJRA 3ITWA 3PE3A 4GZ3A 4AY6A 4XI9A 1U7IA 2FJDB 2X5TA 4N3AA 5BNWA 2X5GA 2FJEB 3OMSA 3BT3A 4CDRA 1QMOE 2A90A 4N39A 3TAXA 3TU3B 2K4NA 3SK1A 4XIFA 3GYXB 5C1DA 4GYYA 4N3BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RSF A;  2DK6 A;  1UJR A;  2A90 A;  1X4R A;  3V3L A; 
#chains in the Genus database with same CATH topology
 4AKX B;  2X5H A;  2RSF A;  4GZ6 A;  4GYW A;  1X4R A;  2FJB B;  4N3C A;  2FFG A;  5AOX A;  3PE4 A;  1E8O A;  4UYK A;  5AOX B;  1E8O B;  4UYK B;  2DK6 A;  1JNZ B;  1JNR B;  2KJZ A;  2W9J A;  1914 A;  4AY5 A;  3VCX A;  4UYJ A;  4GZ5 A;  2FJA B;  3V3L A;  4UYJ B;  1UJR A;  3ITW A;  3PE3 A;  4GZ3 A;  4AY6 A;  4XI9 A;  1U7I A;  2FJD B;  2X5T A;  4N3A A;  5BNW A;  2X5G A;  2FJE B;  3OMS A;  3BT3 A;  4CDR A;  1QMO E;  2A90 A;  4N39 A;  3TAX A;  3TU3 B;  2K4N A;  3SK1 A;  4XIF A;  3GYX B;  5C1D A;  4GYY A;  4N3B A; 
#chains in the Genus database with same CATH homology
 4AKX B;  2X5H A;  2RSF A;  4GZ6 A;  4GYW A;  1X4R A;  2FJB B;  4N3C A;  2FFG A;  5AOX A;  3PE4 A;  1E8O A;  4UYK A;  5AOX B;  1E8O B;  4UYK B;  2DK6 A;  1JNZ B;  1JNR B;  2KJZ A;  2W9J A;  1914 A;  4AY5 A;  3VCX A;  4UYJ A;  4GZ5 A;  2FJA B;  3V3L A;  4UYJ B;  1UJR A;  3ITW A;  3PE3 A;  4GZ3 A;  4AY6 A;  4XI9 A;  1U7I A;  2FJD B;  2X5T A;  4N3A A;  5BNW A;  2X5G A;  2FJE B;  3OMS A;  3BT3 A;  4CDR A;  1QMO E;  2A90 A;  4N39 A;  3TAX A;  3TU3 B;  2K4N A;  3SK1 A;  4XIF A;  3GYX B;  5C1D A;  4GYY A;  4N3B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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