1ULIA

Biphenyl dioxygenase (bpha1a2) derived from rhodococcus sp. strain rha1
Total Genus 144
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
435
structure length
424
Chain Sequence
b'WADADIAELVDERTGRLDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAPDLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPTEGIQYRATWGGHGSGFYIGDPNLLLAIMGPKVTEYWTQGPAAEKASERLGSTERGQQLMAQHMTIFPTCSFLPGINTIRAWHPRGPNEIEVWAFTVVDADAPEEMKEEYRQQTLRTFSAGGVFEQDDGENWVEIQQVLRGHKARSRPFNAEMGLGQTDSDNPDYPGTISYVYSEEAARGLYTQWVRMMTSPDWAALDATR'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords biphenyl dioxygenase large subunit
publication title Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
pubmed doi rcsb
source organism Rhodococcus sp.
molecule tags Oxidoreductase
total genus 144
structure length 424
sequence length 435
chains with identical sequence C, E
ec nomenclature ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date 2003-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1uliA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1uliA01
4HM6A 4HM1A 1NU1E 1O7WA 2QJYC 3H1LE 4NBHD 3L70E 2YFLA 4H0LD 4NB9A 2DE6D 2GBXA 3CWBE 1BE3E 3VMGA 1JM1A 5KLIC 1L0NE 1ZRTE 1UUWA 2DE7D 2NVGA 2YIUC 4NBFA 1L0LE 4PD4E 2YVJB 4NBCA 2ZYLA 4NBBA 1PP9E 2I7FA 2HMMA 3GCEA 2XSOA 1FQTA 2E4PA 2E74D 4NBED 2BMQA 2XRXA 3AZCA 3VMHD 2A06E 3GKEA 2BMOA 1VM9A 1NYKA 4EMJB 1O7GA 2HMJA 2BCCE 2HMNA 2QJKC 1ULJA 2E4QA 4NBAD 4NB8A 1O7MA 1RIEA 4H13D 4P1BH 4HM7A 4QCKA 5AEUA 1Z03A 4HM8A 2YFJA 3CX5E 3L73E 4PV1D 3VMID 3GZYA 1ULIA 1SQVE 3CXHE 4HM3A 1Z01A 4U3FE 4HM0A 2BMRA 3GTSA 3L74E 1KYOE 1KB9E 5BOKA 5KKZC 2NWFA 3D89A 4QUQA 1G8KB 5AEWA 3GOBA 3BCCE 4NB9D 3VMGD 1VCKA 1SQPE 1SJGA 4NBGA 2JO6A 1WW9A 2NUMA 3H1HE 2DE5A 3GCFA 4NBCD 3L72E 3GL2A 5HL4A 3H1JE 3VMHA 2FYNC 4HJLA 4NBDA 3L71E 3EQQA 1O7PA 3GKQA 4OGQD 3EN1A 4NB8D 4HM2A 4AAYB 4NBHA 1BCCE 2XR8A 2QPZA 4HM5A 2ZT9D 1O7NA 2NUKA 4HKVA 1NTKE 2B24A 2D2CD 2HMOA 3VCPA 2DE6A 4HM4A 3H1KE 2DE7A 1VF5D 1RFSA 1SQBE 4QDCA 1UUVA 3TGUE 4QDFA 1EG9A 4NBFD 4AIVA 1SQXE 3H1IE 2Q3WA 3FOUA 4QUPA 2HMLA 4QDFB 2QJPC 3C0DA 1G8JB 4NBBD 4NBEA 2CKFA 3N0QA 3GZXA 1SQQE 2B1XA 3L75E 1Q90C 3GTEA 1WQLA 2FYUE 2GBWA 2NVFA 4NBGD 4NBAA 1PPJE 4QURA 2E76D 4H44D 2DE5D 3VCAA 1O7HA 2XSHA 2HMKA 2NVEA 1NTME 2YFIA 4NBDD 5CXMA 3VMIA 3DQYA 1EZVE 1P84E 4P1CH 5KLVE 2IBZE 3GB4A 3GL0A 2JZAA 1NTZE 1Z02A 2E75D 4QDDA 1NDOA
chains in the Genus database with same CATH superfamily
4HM6A 4HM1A 1NU1E 1O7WA 2QJYC 3H1LE 4NBHD 3L70E 2YFLA 4H0LD 4NB9A 2DE6D 2GBXA 3CWBE 1BE3E 3VMGA 1JM1A 5KLIC 1L0NE 1ZRTE 1UUWA 2DE7D 2NVGA 2YIUC 4NBFA 1L0LE 4PD4E 2YVJB 4NBCA 2ZYLA 4NBBA 1PP9E 2I7FA 2HMMA 3GCEA 2XSOA 1FQTA 2E4PA 2E74D 4NBED 2BMQA 2XRXA 3AZCA 3VMHD 2A06E 3GKEA 2BMOA 1VM9A 1NYKA 4EMJB 1O7GA 2HMJA 2BCCE 2HMNA 2QJKC 1ULJA 2E4QA 4NBAD 4NB8A 1O7MA 1RIEA 4H13D 4P1BH 4HM7A 4QCKA 5AEUA 1Z03A 4HM8A 2YFJA 3CX5E 3L73E 4PV1D 3VMID 3GZYA 1ULIA 1SQVE 3CXHE 4HM3A 1Z01A 4U3FE 4HM0A 2BMRA 3GTSA 3L74E 1KYOE 1KB9E 5BOKA 5KKZC 2NWFA 3D89A 4QUQA 1G8KB 5AEWA 3GOBA 3BCCE 4NB9D 3VMGD 1VCKA 1SQPE 1SJGA 4NBGA 2JO6A 1WW9A 2NUMA 3H1HE 2DE5A 3GCFA 4NBCD 3L72E 3GL2A 5HL4A 3H1JE 3VMHA 2FYNC 4HJLA 4NBDA 3L71E 3EQQA 1O7PA 3GKQA 4OGQD 3EN1A 4NB8D 4HM2A 4AAYB 4NBHA 1BCCE 2XR8A 2QPZA 4HM5A 2ZT9D 1O7NA 2NUKA 4HKVA 1NTKE 2B24A 2D2CD 2HMOA 3VCPA 2DE6A 4HM4A 3H1KE 2DE7A 1VF5D 1RFSA 1SQBE 4QDCA 1UUVA 3TGUE 4QDFA 1EG9A 4NBFD 4AIVA 1SQXE 3H1IE 2Q3WA 3FOUA 4QUPA 2HMLA 4QDFB 2QJPC 3C0DA 1G8JB 4NBBD 4NBEA 2CKFA 3N0QA 3GZXA 1SQQE 2B1XA 3L75E 1Q90C 3GTEA 1WQLA 2FYUE 2GBWA 2NVFA 4NBGD 4NBAA 1PPJE 4QURA 2E76D 4H44D 2DE5D 3VCAA 1O7HA 2XSHA 2HMKA 2NVEA 1NTME 2YFIA 4NBDD 5CXMA 3VMIA 3DQYA 1EZVE 1P84E 4P1CH 5KLVE 2IBZE 3GB4A 3GL0A 2JZAA 1NTZE 1Z02A 2E75D 4QDDA 1NDOA
chains in the Genus database with same CATH topology
4HM6A 4HM1A 1NU1E 1O7WA 2QJYC 3H1LE 4NBHD 3L70E 2YFLA 4H0LD 4NB9A 2DE6D 2GBXA 3CWBE 1BE3E 3VMGA 1JM1A 5KLIC 1L0NE 1ZRTE 1UUWA 2DE7D 2NVGA 2YIUC 4NBFA 1L0LE 4PD4E 2YVJB 4NBCA 2ZYLA 4NBBA 1PP9E 2I7FA 2HMMA 3GCEA 2XSOA 1FQTA 2E4PA 2E74D 4NBED 2BMQA 2XRXA 3AZCA 3VMHD 2A06E 3GKEA 2BMOA 1VM9A 1NYKA 4EMJB 1O7GA 2HMJA 2BCCE 2HMNA 2QJKC 1ULJA 2E4QA 4NBAD 4NB8A 1O7MA 1RIEA 4H13D 4P1BH 4HM7A 4QCKA 5AEUA 1Z03A 4HM8A 2YFJA 3CX5E 3L73E 4PV1D 3VMID 3GZYA 1ULIA 1SQVE 3CXHE 4HM3A 1Z01A 4U3FE 4HM0A 2BMRA 3GTSA 3L74E 1KYOE 1KB9E 5BOKA 5KKZC 2NWFA 3D89A 4QUQA 1G8KB 5AEWA 3GOBA 3BCCE 4NB9D 3VMGD 1VCKA 1SQPE 1SJGA 4NBGA 2JO6A 1WW9A 2NUMA 3H1HE 2DE5A 3GCFA 4NBCD 3L72E 3GL2A 5HL4A 3H1JE 3VMHA 2FYNC 4HJLA 4NBDA 3L71E 3EQQA 1O7PA 3GKQA 4OGQD 3EN1A 4NB8D 4HM2A 4AAYB 4NBHA 1BCCE 2XR8A 2QPZA 4HM5A 2ZT9D 1O7NA 2NUKA 4HKVA 1NTKE 2B24A 2D2CD 2HMOA 3VCPA 2DE6A 4HM4A 3H1KE 2DE7A 1VF5D 1RFSA 1SQBE 4QDCA 1UUVA 3TGUE 4QDFA 1EG9A 4NBFD 4AIVA 1SQXE 3H1IE 2Q3WA 3FOUA 4QUPA 2HMLA 4QDFB 2QJPC 3C0DA 1G8JB 4NBBD 4NBEA 2CKFA 3N0QA 3GZXA 1SQQE 2B1XA 3L75E 1Q90C 3GTEA 1WQLA 2FYUE 2GBWA 2NVFA 4NBGD 4NBAA 1PPJE 4QURA 2E76D 4H44D 2DE5D 3VCAA 1O7HA 2XSHA 2HMKA 2NVEA 1NTME 2YFIA 4NBDD 5CXMA 3VMIA 3DQYA 1EZVE 1P84E 4P1CH 5KLVE 2IBZE 3GB4A 3GL0A 2JZAA 1NTZE 1Z02A 2E75D 4QDDA 1NDOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HM6 A;  4HM1 A;  1NU1 E;  1O7W A;  2QJY C;  3H1L E;  4NBH D;  3L70 E;  2YFL A;  4H0L D;  4NB9 A;  2DE6 D;  2GBX A;  3CWB E;  1BE3 E;  3VMG A;  1JM1 A;  5KLI C;  1L0N E;  1ZRT E;  1UUW A;  2DE7 D;  2NVG A;  2YIU C;  4NBF A;  1L0L E;  4PD4 E;  2YVJ B;  4NBC A;  2ZYL A;  4NBB A;  1PP9 E;  2I7F A;  2HMM A;  3GCE A;  2XSO A;  1FQT A;  2E4P A;  2E74 D;  4NBE D;  2BMQ A;  2XRX A;  3AZC A;  3VMH D;  2A06 E;  3GKE A;  2BMO A;  1VM9 A;  1NYK A;  4EMJ B;  1O7G A;  2HMJ A;  2BCC E;  2HMN A;  2QJK C;  1ULJ A;  2E4Q A;  4NBA D;  4NB8 A;  1O7M A;  1RIE A;  4H13 D;  4P1B H;  4HM7 A;  4QCK A;  5AEU A;  1Z03 A;  4HM8 A;  2YFJ A;  3CX5 E;  3L73 E;  4PV1 D;  3VMI D;  3GZY A;  1ULI A;  1SQV E;  3CXH E;  4HM3 A;  1Z01 A;  4U3F E;  4HM0 A;  2BMR A;  3GTS A;  3L74 E;  1KYO E;  1KB9 E;  5BOK A;  5KKZ C;  2NWF A;  3D89 A;  4QUQ A;  1G8K B;  5AEW A;  3GOB A;  3BCC E;  4NB9 D;  3VMG D;  1VCK A;  1SQP E;  1SJG A;  4NBG A;  2JO6 A;  1WW9 A;  2NUM A;  3H1H E;  2DE5 A;  3GCF A;  4NBC D;  3L72 E;  3GL2 A;  5HL4 A;  3H1J E;  3VMH A;  2FYN C;  4HJL A;  4NBD A;  3L71 E;  3EQQ A;  1O7P A;  3GKQ A;  4OGQ D;  3EN1 A;  4NB8 D;  4HM2 A;  4AAY B;  4NBH A;  1BCC E;  2XR8 A;  2QPZ A;  4HM5 A;  2ZT9 D;  1O7N A;  2NUK A;  4HKV A;  1NTK E;  2B24 A;  2D2C D;  2HMO A;  3VCP A;  2DE6 A;  4HM4 A;  3H1K E;  2DE7 A;  1VF5 D;  1RFS A;  1SQB E;  4QDC A;  1UUV A;  3TGU E;  4QDF A;  1EG9 A;  4NBF D;  4AIV A;  1SQX E;  3H1I E;  2Q3W A;  3FOU A;  4QUP A;  2HML A;  4QDF B;  2QJP C;  3C0D A;  1G8J B;  4NBB D;  4NBE A;  2CKF A;  3N0Q A;  3GZX A;  1SQQ E;  2B1X A;  3L75 E;  1Q90 C;  3GTE A;  1WQL A;  2FYU E;  2GBW A;  2NVF A;  4NBG D;  4NBA A;  1PPJ E;  4QUR A;  2E76 D;  4H44 D;  2DE5 D;  3VCA A;  1O7H A;  2XSH A;  2HMK A;  2NVE A;  1NTM E;  2YFI A;  4NBD D;  5CXM A;  3VMI A;  3DQY A;  1EZV E;  1P84 E;  4P1C H;  5KLV E;  2IBZ E;  3GB4 A;  3GL0 A;  2JZA A;  1NTZ E;  1Z02 A;  2E75 D;  4QDD A;  1NDO A; 
#chains in the Genus database with same CATH topology
 4HM6 A;  4HM1 A;  1NU1 E;  1O7W A;  2QJY C;  3H1L E;  4NBH D;  3L70 E;  2YFL A;  4H0L D;  4NB9 A;  2DE6 D;  2GBX A;  3CWB E;  1BE3 E;  3VMG A;  1JM1 A;  5KLI C;  1L0N E;  1ZRT E;  1UUW A;  2DE7 D;  2NVG A;  2YIU C;  4NBF A;  1L0L E;  4PD4 E;  2YVJ B;  4NBC A;  2ZYL A;  4NBB A;  1PP9 E;  2I7F A;  2HMM A;  3GCE A;  2XSO A;  1FQT A;  2E4P A;  2E74 D;  4NBE D;  2BMQ A;  2XRX A;  3AZC A;  3VMH D;  2A06 E;  3GKE A;  2BMO A;  1VM9 A;  1NYK A;  4EMJ B;  1O7G A;  2HMJ A;  2BCC E;  2HMN A;  2QJK C;  1ULJ A;  2E4Q A;  4NBA D;  4NB8 A;  1O7M A;  1RIE A;  4H13 D;  4P1B H;  4HM7 A;  4QCK A;  5AEU A;  1Z03 A;  4HM8 A;  2YFJ A;  3CX5 E;  3L73 E;  4PV1 D;  3VMI D;  3GZY A;  1ULI A;  1SQV E;  3CXH E;  4HM3 A;  1Z01 A;  4U3F E;  4HM0 A;  2BMR A;  3GTS A;  3L74 E;  1KYO E;  1KB9 E;  5BOK A;  5KKZ C;  2NWF A;  3D89 A;  4QUQ A;  1G8K B;  5AEW A;  3GOB A;  3BCC E;  4NB9 D;  3VMG D;  1VCK A;  1SQP E;  1SJG A;  4NBG A;  2JO6 A;  1WW9 A;  2NUM A;  3H1H E;  2DE5 A;  3GCF A;  4NBC D;  3L72 E;  3GL2 A;  5HL4 A;  3H1J E;  3VMH A;  2FYN C;  4HJL A;  4NBD A;  3L71 E;  3EQQ A;  1O7P A;  3GKQ A;  4OGQ D;  3EN1 A;  4NB8 D;  4HM2 A;  4AAY B;  4NBH A;  1BCC E;  2XR8 A;  2QPZ A;  4HM5 A;  2ZT9 D;  1O7N A;  2NUK A;  4HKV A;  1NTK E;  2B24 A;  2D2C D;  2HMO A;  3VCP A;  2DE6 A;  4HM4 A;  3H1K E;  2DE7 A;  1VF5 D;  1RFS A;  1SQB E;  4QDC A;  1UUV A;  3TGU E;  4QDF A;  1EG9 A;  4NBF D;  4AIV A;  1SQX E;  3H1I E;  2Q3W A;  3FOU A;  4QUP A;  2HML A;  4QDF B;  2QJP C;  3C0D A;  1G8J B;  4NBB D;  4NBE A;  2CKF A;  3N0Q A;  3GZX A;  1SQQ E;  2B1X A;  3L75 E;  1Q90 C;  3GTE A;  1WQL A;  2FYU E;  2GBW A;  2NVF A;  4NBG D;  4NBA A;  1PPJ E;  4QUR A;  2E76 D;  4H44 D;  2DE5 D;  3VCA A;  1O7H A;  2XSH A;  2HMK A;  2NVE A;  1NTM E;  2YFI A;  4NBD D;  5CXM A;  3VMI A;  3DQY A;  1EZV E;  1P84 E;  4P1C H;  5KLV E;  2IBZ E;  3GB4 A;  3GL0 A;  2JZA A;  1NTZ E;  1Z02 A;  2E75 D;  4QDD A;  1NDO A; 
#chains in the Genus database with same CATH homology
 4HM6 A;  4HM1 A;  1NU1 E;  1O7W A;  2QJY C;  3H1L E;  4NBH D;  3L70 E;  2YFL A;  4H0L D;  4NB9 A;  2DE6 D;  2GBX A;  3CWB E;  1BE3 E;  3VMG A;  1JM1 A;  5KLI C;  1L0N E;  1ZRT E;  1UUW A;  2DE7 D;  2NVG A;  2YIU C;  4NBF A;  1L0L E;  4PD4 E;  2YVJ B;  4NBC A;  2ZYL A;  4NBB A;  1PP9 E;  2I7F A;  2HMM A;  3GCE A;  2XSO A;  1FQT A;  2E4P A;  2E74 D;  4NBE D;  2BMQ A;  2XRX A;  3AZC A;  3VMH D;  2A06 E;  3GKE A;  2BMO A;  1VM9 A;  1NYK A;  4EMJ B;  1O7G A;  2HMJ A;  2BCC E;  2HMN A;  2QJK C;  1ULJ A;  2E4Q A;  4NBA D;  4NB8 A;  1O7M A;  1RIE A;  4H13 D;  4P1B H;  4HM7 A;  4QCK A;  5AEU A;  1Z03 A;  4HM8 A;  2YFJ A;  3CX5 E;  3L73 E;  4PV1 D;  3VMI D;  3GZY A;  1ULI A;  1SQV E;  3CXH E;  4HM3 A;  1Z01 A;  4U3F E;  4HM0 A;  2BMR A;  3GTS A;  3L74 E;  1KYO E;  1KB9 E;  5BOK A;  5KKZ C;  2NWF A;  3D89 A;  4QUQ A;  1G8K B;  5AEW A;  3GOB A;  3BCC E;  4NB9 D;  3VMG D;  1VCK A;  1SQP E;  1SJG A;  4NBG A;  2JO6 A;  1WW9 A;  2NUM A;  3H1H E;  2DE5 A;  3GCF A;  4NBC D;  3L72 E;  3GL2 A;  5HL4 A;  3H1J E;  3VMH A;  2FYN C;  4HJL A;  4NBD A;  3L71 E;  3EQQ A;  1O7P A;  3GKQ A;  4OGQ D;  3EN1 A;  4NB8 D;  4HM2 A;  4AAY B;  4NBH A;  1BCC E;  2XR8 A;  2QPZ A;  4HM5 A;  2ZT9 D;  1O7N A;  2NUK A;  4HKV A;  1NTK E;  2B24 A;  2D2C D;  2HMO A;  3VCP A;  2DE6 A;  4HM4 A;  3H1K E;  2DE7 A;  1VF5 D;  1RFS A;  1SQB E;  4QDC A;  1UUV A;  3TGU E;  4QDF A;  1EG9 A;  4NBF D;  4AIV A;  1SQX E;  3H1I E;  2Q3W A;  3FOU A;  4QUP A;  2HML A;  4QDF B;  2QJP C;  3C0D A;  1G8J B;  4NBB D;  4NBE A;  2CKF A;  3N0Q A;  3GZX A;  1SQQ E;  2B1X A;  3L75 E;  1Q90 C;  3GTE A;  1WQL A;  2FYU E;  2GBW A;  2NVF A;  4NBG D;  4NBA A;  1PPJ E;  4QUR A;  2E76 D;  4H44 D;  2DE5 D;  3VCA A;  1O7H A;  2XSH A;  2HMK A;  2NVE A;  1NTM E;  2YFI A;  4NBD D;  5CXM A;  3VMI A;  3DQY A;  1EZV E;  1P84 E;  4P1C H;  5KLV E;  2IBZ E;  3GB4 A;  3GL0 A;  2JZA A;  1NTZ E;  1Z02 A;  2E75 D;  4QDD A;  1NDO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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