1ULMA

Crystal structure of pokeweed lectin-d2 complexed with tri-n-acetylchitotriose
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
82
structure length
82
Chain Sequence
APECGERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQCDYWRCGRDFGGRLCEEDMCCSKYGWCGYSDDHCEDGCQSQCD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords lectin-D2
publication title Similarity between protein-protein and protein-carbohydrate interactions, revealed by two crystal structures of lectins from the roots of pokeweed.
pubmed doi rcsb
total genus 26
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1ulmA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1ulmA01
1P9GA 1HEVA 2X3TA 4WP4A 2WGCA 1ULNA 2X52A 1WGTA 1P9ZA 1Q9BA 2CWGA 2DKVA 1K7VA 1ULKA 4MPIA 9WGAA 1WGCA 7WGAA 1ULMA 2UVOA 1K7UA 1K7TA 2LB7A 4AMLA 1UHAA 1WKXA
chains in the Genus database with same CATH superfamily
1CHOI 3GOXA 2QQDA 2ROWA 3FSYA 1M8BA 2X3TA 1NXUA 4B6DA 3CXLA 2Y0MA 1V1HA 5EX3A 4E1PA 3UGDA 1KBEA 2GKVA 1PTRA 1VDDA 1TBRR 2DB6A 1U5KA 1CGII 2P6AC 2ELIA 1X74A 5FUWA 2ODDA 1MJ9A 3VDPA 1TGSI 3UEYA 2WVJA 1XA6A 2WCYA 1MJBA 1P9ZA 2DKVA 2GKTI 3HH2C 1UVFA 3TO9A 2ARPF 1KBFA 1DS3I 1WGCA 2QQCA 5DAEA 1WTJA 1OMUA 1IY5A 2NU1I 2E5RA 3R5AA 2KCXA 4A24A 2SGFI 2QQ0A 3UGLA 1PJUA 2L8EA 1KMAA 2N17A 3FSXA 4FKDA 3E2IA 2J9RA 2UZ3A 3SGBI 5HQ8A 1FYBA 2B8TA 3UFFA 3OL0A 2V53A 2XRCA 1M8CA 2PQ8A 5HI7A 2WGCA 2LUYA 2KMQA 1UUCA 3R5CA 2JZMA 1DS2I 1CT4I 1FAQA 1OMTA 2OZUA 1Y8FA 1Z7KB 2X52A 2SGEI 1HDLA 1W3SA 3OVOA 2JXDA 2JW6A 1FY7A 2YQPA 1Y1BA 1PTQA 1X4SA 1RFHA 2VRWB 5J8CA 1K7VA 3SGQI 4AMLA 2JA1A 1Y1CA 3SEKC 1NUBA 5FUXA 4JCVE 1HPTA 2CJSC 2DIPA 1SGPI 2A20A 5CCLA 2J87A 2SGPI 4E1RA 3TO6A 1K7TA 1SGQI 1R79A 1TBNA 2ORVA 4UXJA 1UHAA 1WKXA 3OXFA 1CE3A 1S20A 2QQEA 2N71A 3FC3A 1H0ZA 2OU2A 1TBQR 2RIJA 1HEVA 4WP4A 3BJIA 1R0RI 1IY6A 2QPOA 2E73A 3QTLD 3TO7A 2SGDI 2N52A 1YTPA 1XBTA 2CWHA 2LEOA 1CGJI 1SGRI 1BMOA 1SGNI 1LR8A 2N1AB 3KY9A 3TJQA 1MT1A 1LR9A 2V1CA 4OVOA 2KMRA 3E59A 3R5BA 2FNFX 2B0UC 5FUVA 1Q9BA 1OVOA 2NU2I 2CWGA 2GKRI 4GI3C 1TOTA 1CT2I 5FUYA 2KMPA 9WGAA 2BUSA 2SGQI 3UEJA 7WGAA 1OYVI 3TOBA 2UVOA 3D00A 5E3PA 1SGDI 2RC4A 4SGBI 1TUSA 1SGYI 3UOEA 4HGUA 1V1IA 3B4VC 2ENNA 2NU4I 1N13A 1P9GA 1CT0I 1TURA 1PCEA 2M5XA 5E3RA 3QWPA 5E3QA 2OVOA 2GVIA 3MEKA 1FARA 1ULNA 3QAHA 3OXGA 5J8FA 3TOAA 1WGTA 1Z2IA 1LR7A 2JYYA 2L7XA 1MJAA 1AN1I 1HJAI 2K9HA 2YUUA 1W4RA 2ENZA 3PDNA 5JHWC 3UGIA 2NU0I 2ORWA 2CWFA 5CCMA 1SGEI 4UXIA 5EX0A 2KMOA 1YU6C 1IW4A 3VDUA 1TIHA 1ULKA 1UVGA 2GIVA 2V1CC 4MPIA 2W0TA 4DNCA 2NU3I 1BUSA 4UXHA 3VE5A 1XX6A 1ULMA 2OD1A 3OXLA 1K7UA 3R5DA 1PPFI 4L9MA 3RU0A 1CSOI 2LB7A 1TBOA 2F3CI 2ERWA
chains in the Genus database with same CATH topology
1P9GA 1HEVA 2X3TA 4WP4A 2WGCA 1ULNA 2X52A 1WGTA 1P9ZA 1Q9BA 2CWGA 2DKVA 1K7VA 1ULKA 4MPIA 9WGAA 1WGCA 7WGAA 1ULMA 2UVOA 1K7UA 1K7TA 2LB7A 4AMLA 1UHAA 1WKXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P9G A;  1HEV A;  2X3T A;  4WP4 A;  2WGC A;  1ULN A;  2X52 A;  1WGT A;  1P9Z A;  1Q9B A;  2CWG A;  2DKV A;  1K7V A;  1ULK A;  4MPI A;  9WGA A;  1WGC A;  7WGA A;  1ULM A;  2UVO A;  1K7U A;  1K7T A;  2LB7 A;  4AML A;  1UHA A;  1WKX A; 
#chains in the Genus database with same CATH topology
 1CHO I;  3GOX A;  2QQD A;  2ROW A;  3FSY A;  1M8B A;  2X3T A;  1NXU A;  4B6D A;  3CXL A;  2Y0M A;  1V1H A;  5EX3 A;  4E1P A;  3UGD A;  1KBE A;  2GKV A;  1PTR A;  1VDD A;  1TBR R;  2DB6 A;  1U5K A;  1CGI I;  2P6A C;  2ELI A;  1X74 A;  5FUW A;  2ODD A;  1MJ9 A;  3VDP A;  1TGS I;  3UEY A;  2WVJ A;  1XA6 A;  2WCY A;  1MJB A;  1P9Z A;  2DKV A;  2GKT I;  3HH2 C;  1UVF A;  3TO9 A;  2ARP F;  1KBF A;  1DS3 I;  1WGC A;  2QQC A;  5DAE A;  1WTJ A;  1OMU A;  1IY5 A;  2NU1 I;  2E5R A;  3R5A A;  2KCX A;  4A24 A;  2SGF I;  2QQ0 A;  3UGL A;  1PJU A;  2L8E A;  1KMA A;  2N17 A;  3FSX A;  4FKD A;  3E2I A;  2J9R A;  2UZ3 A;  3SGB I;  5HQ8 A;  1FYB A;  2B8T A;  3UFF A;  3OL0 A;  2V53 A;  2XRC A;  1M8C A;  2PQ8 A;  5HI7 A;  2WGC A;  2LUY A;  2KMQ A;  1UUC A;  3R5C A;  2JZM A;  1DS2 I;  1CT4 I;  1FAQ A;  1OMT A;  2OZU A;  1Y8F A;  1Z7K B;  2X52 A;  2SGE I;  1HDL A;  1W3S A;  3OVO A;  2JXD A;  2JW6 A;  1FY7 A;  2YQP A;  1Y1B A;  1PTQ A;  1X4S A;  1RFH A;  2VRW B;  5J8C A;  1K7V A;  3SGQ I;  4AML A;  2JA1 A;  1Y1C A;  3SEK C;  1NUB A;  5FUX A;  4JCV E;  1HPT A;  2CJS C;  2DIP A;  1SGP I;  2A20 A;  5CCL A;  2J87 A;  2SGP I;  4E1R A;  3TO6 A;  1K7T A;  1SGQ I;  1R79 A;  1TBN A;  2ORV A;  4UXJ A;  1UHA A;  1WKX A;  3OXF A;  1CE3 A;  1S20 A;  2QQE A;  2N71 A;  3FC3 A;  1H0Z A;  2OU2 A;  1TBQ R;  2RIJ A;  1HEV A;  4WP4 A;  3BJI A;  1R0R I;  1IY6 A;  2QPO A;  2E73 A;  3QTL D;  3TO7 A;  2SGD I;  2N52 A;  1YTP A;  1XBT A;  2CWH A;  2LEO A;  1CGJ I;  1SGR I;  1BMO A;  1SGN I;  1LR8 A;  2N1A B;  3KY9 A;  3TJQ A;  1MT1 A;  1LR9 A;  2V1C A;  4OVO A;  2KMR A;  3E59 A;  3R5B A;  2FNF X;  2B0U C;  5FUV A;  1Q9B A;  1OVO A;  2NU2 I;  2CWG A;  2GKR I;  4GI3 C;  1TOT A;  1CT2 I;  5FUY A;  2KMP A;  9WGA A;  2BUS A;  2SGQ I;  3UEJ A;  7WGA A;  1OYV I;  3TOB A;  2UVO A;  3D00 A;  5E3P A;  1SGD I;  2RC4 A;  4SGB I;  1TUS A;  1SGY I;  3UOE A;  4HGU A;  1V1I A;  3B4V C;  2ENN A;  2NU4 I;  1N13 A;  1P9G A;  1CT0 I;  1TUR A;  1PCE A;  2M5X A;  5E3R A;  3QWP A;  5E3Q A;  2OVO A;  2GVI A;  3MEK A;  1FAR A;  1ULN A;  3QAH A;  3OXG A;  5J8F A;  3TOA A;  1WGT A;  1Z2I A;  1LR7 A;  2JYY A;  2L7X A;  1MJA A;  1AN1 I;  1HJA I;  2K9H A;  2YUU A;  1W4R A;  2ENZ A;  3PDN A;  5JHW C;  3UGI A;  2NU0 I;  2ORW A;  2CWF A;  5CCM A;  1SGE I;  4UXI A;  5EX0 A;  2KMO A;  1YU6 C;  1IW4 A;  3VDU A;  1TIH A;  1ULK A;  1UVG A;  2GIV A;  2V1C C;  4MPI A;  2W0T A;  4DNC A;  2NU3 I;  1BUS A;  4UXH A;  3VE5 A;  1XX6 A;  1ULM A;  2OD1 A;  3OXL A;  1K7U A;  3R5D A;  1PPF I;  4L9M A;  3RU0 A;  1CSO I;  2LB7 A;  1TBO A;  2F3C I;  2ERW A; 
#chains in the Genus database with same CATH homology
 1P9G A;  1HEV A;  2X3T A;  4WP4 A;  2WGC A;  1ULN A;  2X52 A;  1WGT A;  1P9Z A;  1Q9B A;  2CWG A;  2DKV A;  1K7V A;  1ULK A;  4MPI A;  9WGA A;  1WGC A;  7WGA A;  1ULM A;  2UVO A;  1K7U A;  1K7T A;  2LB7 A;  4AML A;  1UHA A;  1WKX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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