1ULNA

Crystal structure of pokeweed lectin-d1
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
82
structure length
82
Chain Sequence
APECGERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQCDYWRCGRDFGGRLCEEDMCCSKYGWCGYSDDHCEDGCQSQCD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
publication title Structures of two lectins from the roots of pokeweed (Phytolacca americana).
pubmed doi rcsb
molecule keywords lectin-D
total genus 25
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2003-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1ulnA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1ulnA01
2LB7A 1K7TA 1P9ZA 4MPIA 4AMLA 2CWGA 1ULNA 2X52A 7WGAA 1Q9BA 2X3TA 2UVOA 2WGCA 1K7UA 1K7VA 1ULKA 9WGAA 2DKVA 1WGCA 1HEVA 1UHAA 1WKXA 1ULMA 1WGTA 1P9GA 4WP4A
chains in the Genus database with same CATH superfamily
2YUUA 2CWFA 2NU2I 4HGUA 1K7TA 1WTJA 2CJSC 2NU4I 1BUSA 2N17A 2RIJA 2WCYA 1KMAA 3UEYA 3UFFA 3VE5A 1TBQR 3OXLA 1MJBA 1KBEA 1X4SA 2JZMA 1YU6C 2QQCA 1SGRI 1ULNA 2NU3I 1Z2IA 2SGEI 1OVOA 1PTQA 3VDUA 1NUBA 2X3TA 1IW4A 4JCVE 1M8BA 2WGCA 3CXLA 2JA1A 3TOBA 1LR7A 4OVOA 2JXDA 1K7VA 1ULKA 3HH2C 2KMPA 1Y8FA 2Y0MA 2A20A 1CT0I 2J87A 5HQ8A 2SGDI 5CCMA 5EX3A 2YQPA 1V1IA 2QQEA 3R5BA 2J9RA 2PQ8A 1TOTA 4DNCA 1SGDI 3SGBI 1IY5A 5FUVA 1W4RA 3SEKC 2V53A 1AN1I 3TJQA 2DB6A 2WVJA 1CGJI 2XRCA 3FSYA 1UVFA 5CCLA 1U5KA 2QQDA 3R5CA 2SGPI 5E3PA 1TURA 1TGSI 2N52A 3TO7A 2GIVA 4AMLA 4E1PA 2L8EA 2QQ0A 2SGFI 1X74A 1CT4I 2LEOA 3E2IA 1M8CA 1XBTA 2UVOA 2NU0I 1CSOI 3SGQI 3UGIA 2OVOA 1HPTA 2GKTI 2V1CA 1R0RI 5EX0A 1K7UA 3R5AA 5JHWC 3FC3A 2GKRI 2SGQI 5HI7A 9WGAA 1LR9A 1SGPI 1S20A 1Y1CA 3BJIA 1DS3I 2ROWA 1SGYI 1FARA 1OYVI 1TBOA 1SGQI 3D00A 2OU2A 3E59A 4UXJA 2V1CC 4SGBI 2NU1I 4UXHA 3UEJA 1SGNI 1XX6A 1ULMA 1DS2I 2QPOA 4L9MA 3RU0A 1FY7A 3OVOA 5FUXA 1MT1A 1VDDA 2DIPA 2LB7A 1HDLA 2RC4A 2CWHA 3GOXA 1CT2I 2K9HA 3TO6A 2ERWA 2OD1A 1LR8A 2X52A 2L7XA 4B6DA 2B8TA 1KBFA 3PDNA 2M5XA 1R79A 3OL0A 1PCEA 2KCXA 3FSXA 3QTLD 3R5DA 1CGII 5E3QA 1UVGA 3OXFA 4E1RA 2LUYA 2GKVA 2N1AB 1CHOI 1TIHA 3QWPA 2DKVA 2ENZA 1SGEI 1WGCA 5DAEA 2E73A 2KMQA 1H0ZA 1CE3A 5E3RA 2ELIA 2KMOA 2VRWB 3B4VC 5J8CA 1FYBA 2UZ3A 1P9GA 4WP4A 1TUSA 1TBNA 2KMRA 1P9ZA 3UGLA 3UGDA 4MPIA 2F3CI 3KY9A 2OZUA 3UOEA 2ODDA 1UUCA 2JW6A 1PJUA 1HJAI 4GI3C 1V1HA 2ENNA 4A24A 2CWGA 3TOAA 1IY6A 2B0UC 1PTRA 1W3SA 1HEVA 7WGAA 5J8FA 2BUSA 5FUWA 1Q9BA 1OMUA 2N71A 1YTPA 3MEKA 4FKDA 2ORVA 1RFHA 2ARPF 2E5RA 1MJ9A 2GVIA 2ORWA 1Y1BA 1MJAA 2JYYA 3TO9A 4UXIA 3QAHA 1UHAA 1WKXA 2FNFX 3VDPA 1BMOA 1XA6A 3OXGA 2P6AC 1Z7KB 2W0TA 5FUYA 1NXUA 1PPFI 1TBRR 1WGTA 1FAQA 1OMTA 1N13A
chains in the Genus database with same CATH topology
2LB7A 1K7TA 1P9ZA 4MPIA 4AMLA 2CWGA 1ULNA 2X52A 7WGAA 1Q9BA 2X3TA 2UVOA 2WGCA 1K7UA 1K7VA 1ULKA 9WGAA 2DKVA 1WGCA 1HEVA 1UHAA 1WKXA 1ULMA 1WGTA 1P9GA 4WP4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LB7 A;  1K7T A;  1P9Z A;  4MPI A;  4AML A;  2CWG A;  1ULN A;  2X52 A;  7WGA A;  1Q9B A;  2X3T A;  2UVO A;  2WGC A;  1K7U A;  1K7V A;  1ULK A;  9WGA A;  2DKV A;  1WGC A;  1HEV A;  1UHA A;  1WKX A;  1ULM A;  1WGT A;  1P9G A;  4WP4 A; 
#chains in the Genus database with same CATH topology
 2YUU A;  2CWF A;  2NU2 I;  4HGU A;  1K7T A;  1WTJ A;  2CJS C;  2NU4 I;  1BUS A;  2N17 A;  2RIJ A;  2WCY A;  1KMA A;  3UEY A;  3UFF A;  3VE5 A;  1TBQ R;  3OXL A;  1MJB A;  1KBE A;  1X4S A;  2JZM A;  1YU6 C;  2QQC A;  1SGR I;  1ULN A;  2NU3 I;  1Z2I A;  2SGE I;  1OVO A;  1PTQ A;  3VDU A;  1NUB A;  2X3T A;  1IW4 A;  4JCV E;  1M8B A;  2WGC A;  3CXL A;  2JA1 A;  3TOB A;  1LR7 A;  4OVO A;  2JXD A;  1K7V A;  1ULK A;  3HH2 C;  2KMP A;  1Y8F A;  2Y0M A;  2A20 A;  1CT0 I;  2J87 A;  5HQ8 A;  2SGD I;  5CCM A;  5EX3 A;  2YQP A;  1V1I A;  2QQE A;  3R5B A;  2J9R A;  2PQ8 A;  1TOT A;  4DNC A;  1SGD I;  3SGB I;  1IY5 A;  5FUV A;  1W4R A;  3SEK C;  2V53 A;  1AN1 I;  3TJQ A;  2DB6 A;  2WVJ A;  1CGJ I;  2XRC A;  3FSY A;  1UVF A;  5CCL A;  1U5K A;  2QQD A;  3R5C A;  2SGP I;  5E3P A;  1TUR A;  1TGS I;  2N52 A;  3TO7 A;  2GIV A;  4AML A;  4E1P A;  2L8E A;  2QQ0 A;  2SGF I;  1X74 A;  1CT4 I;  2LEO A;  3E2I A;  1M8C A;  1XBT A;  2UVO A;  2NU0 I;  1CSO I;  3SGQ I;  3UGI A;  2OVO A;  1HPT A;  2GKT I;  2V1C A;  1R0R I;  5EX0 A;  1K7U A;  3R5A A;  5JHW C;  3FC3 A;  2GKR I;  2SGQ I;  5HI7 A;  9WGA A;  1LR9 A;  1SGP I;  1S20 A;  1Y1C A;  3BJI A;  1DS3 I;  2ROW A;  1SGY I;  1FAR A;  1OYV I;  1TBO A;  1SGQ I;  3D00 A;  2OU2 A;  3E59 A;  4UXJ A;  2V1C C;  4SGB I;  2NU1 I;  4UXH A;  3UEJ A;  1SGN I;  1XX6 A;  1ULM A;  1DS2 I;  2QPO A;  4L9M A;  3RU0 A;  1FY7 A;  3OVO A;  5FUX A;  1MT1 A;  1VDD A;  2DIP A;  2LB7 A;  1HDL A;  2RC4 A;  2CWH A;  3GOX A;  1CT2 I;  2K9H A;  3TO6 A;  2ERW A;  2OD1 A;  1LR8 A;  2X52 A;  2L7X A;  4B6D A;  2B8T A;  1KBF A;  3PDN A;  2M5X A;  1R79 A;  3OL0 A;  1PCE A;  2KCX A;  3FSX A;  3QTL D;  3R5D A;  1CGI I;  5E3Q A;  1UVG A;  3OXF A;  4E1R A;  2LUY A;  2GKV A;  2N1A B;  1CHO I;  1TIH A;  3QWP A;  2DKV A;  2ENZ A;  1SGE I;  1WGC A;  5DAE A;  2E73 A;  2KMQ A;  1H0Z A;  1CE3 A;  5E3R A;  2ELI A;  2KMO A;  2VRW B;  3B4V C;  5J8C A;  1FYB A;  2UZ3 A;  1P9G A;  4WP4 A;  1TUS A;  1TBN A;  2KMR A;  1P9Z A;  3UGL A;  3UGD A;  4MPI A;  2F3C I;  3KY9 A;  2OZU A;  3UOE A;  2ODD A;  1UUC A;  2JW6 A;  1PJU A;  1HJA I;  4GI3 C;  1V1H A;  2ENN A;  4A24 A;  2CWG A;  3TOA A;  1IY6 A;  2B0U C;  1PTR A;  1W3S A;  1HEV A;  7WGA A;  5J8F A;  2BUS A;  5FUW A;  1Q9B A;  1OMU A;  2N71 A;  1YTP A;  3MEK A;  4FKD A;  2ORV A;  1RFH A;  2ARP F;  2E5R A;  1MJ9 A;  2GVI A;  2ORW A;  1Y1B A;  1MJA A;  2JYY A;  3TO9 A;  4UXI A;  3QAH A;  1UHA A;  1WKX A;  2FNF X;  3VDP A;  1BMO A;  1XA6 A;  3OXG A;  2P6A C;  1Z7K B;  2W0T A;  5FUY A;  1NXU A;  1PPF I;  1TBR R;  1WGT A;  1FAQ A;  1OMT A;  1N13 A; 
#chains in the Genus database with same CATH homology
 2LB7 A;  1K7T A;  1P9Z A;  4MPI A;  4AML A;  2CWG A;  1ULN A;  2X52 A;  7WGA A;  1Q9B A;  2X3T A;  2UVO A;  2WGC A;  1K7U A;  1K7V A;  1ULK A;  9WGA A;  2DKV A;  1WGC A;  1HEV A;  1UHA A;  1WKX A;  1ULM A;  1WGT A;  1P9G A;  4WP4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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