1ULNA

Crystal structure of pokeweed lectin-d1
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
82
structure length
82
Chain Sequence
b'APECGERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQCDYWRCGRDFGGRLCEEDMCCSKYGWCGYSDDHCEDGCQSQCD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of two lectins from the roots of pokeweed (Phytolacca americana).
pubmed doi rcsb
molecule keywords lectin-D
molecule tags Sugar binding protein
total genus 25
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2003-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1ulnA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1ulnA01
4MPIA 1K7VA 2LB7A 1K7UA 7WGAA 1K7TA 2WGCA 9WGAA 2X3TA 1P9ZA 2X52A 1ULKA 2DKVA 4WP4A 1WGTA 1Q9BA 2CWGA 1ULNA 1WKXA 1HEVA 1WGCA 1P9GA 1ULMA 4AMLA 1UHAA 2UVOA
chains in the Genus database with same CATH superfamily
1TIHA 3B4VC 1PCEA 1TBOA 2LUYA 3QWPA 1LR7A 2SGDI 2PQ8A 1K7TA 1LR9A 1WTJA 1YU6C 1UVGA 1MJAA 1KBEA 1UVFA 3OXGA 5FUVA 5CCMA 2BUSA 2ARPF 3UEJA 2A20A 2NU1I 1X74A 2SGFI 3R5BA 3OXFA 3TOBA 2KMOA 2X52A 3VDPA 5EX0A 2DKVA 1TBQR 4WP4A 1CT4I 1BMOA 1R79A 2N1AB 3PDNA 2XRCA 1FY7A 2L7XA 1TUSA 2NU3I 2CWGA 3R5DA 3SGQI 1SGEI 1KMAA 1SGYI 2W0TA 2E73A 2J9RA 5FUYA 1KBFA 3VDUA 2N17A 2CWHA 3QTLD 3UOEA 3FSXA 2SGQI 2OZUA 2UZ3A 2N71A 2GIVA 5E3PA 4GI3C 4A24A 2GKRI 3UGIA 4UXJA 2QPOA 1CHOI 1AN1I 4UXIA 1K7VA 2LB7A 3HH2C 4DNCA 1CGII 1Y1CA 4B6DA 1OVOA 7WGAA 2FNFX 5J8FA 1HDLA 2QQEA 1CGJI 2JXDA 2WGCA 9WGAA 1FARA 2X3TA 2YQPA 1OYVI 2F3CI 2ODDA 2JW6A 4E1PA 1HJAI 2OU2A 3TO6A 2V53A 1SGDI 1M8CA 2YUUA 3KY9A 3TOAA 2JYYA 1MJ9A 5EX3A 1UUCA 3OXLA 1Q9BA 2DB6A 1ULNA 1WKXA 1PPFI 1XA6A 1PTQA 2N52A 3SGBI 1ULMA 2LEOA 3FSYA 4UXHA 5JHWC 1X4SA 2ENNA 1S20A 2V1CA 3OVOA 3VE5A 3UEYA 2UVOA 1Y8FA 1TBRR 3TJQA 1IY6A 5FUXA 1Y1BA 2L8EA 5E3RA 1U5KA 3SEKC 3CXLA 2CWFA 1BUSA 1SGNI 2SGPI 2B0UC 5E3QA 1NUBA 3OL0A 2ORWA 2ORVA 5CCLA 1MT1A 3GOXA 3D00A 4E1RA 1R0RI 3BJIA 1P9ZA 2NU2I 1DS2I 1TOTA 1XBTA 2B8TA 2DIPA 2KMQA 2NU0I 1WGTA 5HI7A 2Y0MA 3R5CA 1NXUA 1TGSI 2NU4I 1HEVA 2CJSC 2ERWA 2JA1A 1P9GA 3E2IA 5HQ8A 2WVJA 3UGLA 1V1IA 2P6AC 5J8CA 1MJBA 2K9HA 1H0ZA 2WCYA 1FAQA 1HPTA 5FUWA 4SGBI 1DS3I 3E59A 1IW4A 1N13A 4MPIA 4OVOA 1IY5A 1OMUA 2OD1A 2ROWA 1K7UA 1M8BA 2SGEI 1CE3A 1W3SA 2V1CC 1SGQI 4L9MA 1Z7KB 5DAEA 3TO9A 4FKDA 1PJUA 2ELIA 3QAHA 1VDDA 2KMPA 1CT2I 2VRWB 1PTRA 4JCVE 1YTPA 1ULKA 3UGDA 2JZMA 4HGUA 1FYBA 3TO7A 1SGRI 1XX6A 2J87A 1W4RA 2KCXA 2KMRA 2GKTI 2QQ0A 2QQCA 2RC4A 2ENZA 1WGCA 1OMTA 1RFHA 2GKVA 2M5XA 1LR8A 1TBNA 3UFFA 4AMLA 3FC3A 1TURA 1UHAA 2GVIA 3RU0A 2RIJA 1CT0I 1SGPI 1V1HA 1CSOI 2QQDA 2OVOA 2E5RA 3R5AA 1Z2IA 3MEKA
chains in the Genus database with same CATH topology
4MPIA 1K7VA 2LB7A 1K7UA 7WGAA 1K7TA 2WGCA 9WGAA 2X3TA 1P9ZA 2X52A 1ULKA 2DKVA 4WP4A 1WGTA 1Q9BA 2CWGA 1ULNA 1WKXA 1HEVA 1WGCA 1P9GA 1ULMA 4AMLA 1UHAA 2UVOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MPI A;  1K7V A;  2LB7 A;  1K7U A;  7WGA A;  1K7T A;  2WGC A;  9WGA A;  2X3T A;  1P9Z A;  2X52 A;  1ULK A;  2DKV A;  4WP4 A;  1WGT A;  1Q9B A;  2CWG A;  1ULN A;  1WKX A;  1HEV A;  1WGC A;  1P9G A;  1ULM A;  4AML A;  1UHA A;  2UVO A; 
#chains in the Genus database with same CATH topology
 1TIH A;  3B4V C;  1PCE A;  1TBO A;  2LUY A;  3QWP A;  1LR7 A;  2SGD I;  2PQ8 A;  1K7T A;  1LR9 A;  1WTJ A;  1YU6 C;  1UVG A;  1MJA A;  1KBE A;  1UVF A;  3OXG A;  5FUV A;  5CCM A;  2BUS A;  2ARP F;  3UEJ A;  2A20 A;  2NU1 I;  1X74 A;  2SGF I;  3R5B A;  3OXF A;  3TOB A;  2KMO A;  2X52 A;  3VDP A;  5EX0 A;  2DKV A;  1TBQ R;  4WP4 A;  1CT4 I;  1BMO A;  1R79 A;  2N1A B;  3PDN A;  2XRC A;  1FY7 A;  2L7X A;  1TUS A;  2NU3 I;  2CWG A;  3R5D A;  3SGQ I;  1SGE I;  1KMA A;  1SGY I;  2W0T A;  2E73 A;  2J9R A;  5FUY A;  1KBF A;  3VDU A;  2N17 A;  2CWH A;  3QTL D;  3UOE A;  3FSX A;  2SGQ I;  2OZU A;  2UZ3 A;  2N71 A;  2GIV A;  5E3P A;  4GI3 C;  4A24 A;  2GKR I;  3UGI A;  4UXJ A;  2QPO A;  1CHO I;  1AN1 I;  4UXI A;  1K7V A;  2LB7 A;  3HH2 C;  4DNC A;  1CGI I;  1Y1C A;  4B6D A;  1OVO A;  7WGA A;  2FNF X;  5J8F A;  1HDL A;  2QQE A;  1CGJ I;  2JXD A;  2WGC A;  9WGA A;  1FAR A;  2X3T A;  2YQP A;  1OYV I;  2F3C I;  2ODD A;  2JW6 A;  4E1P A;  1HJA I;  2OU2 A;  3TO6 A;  2V53 A;  1SGD I;  1M8C A;  2YUU A;  3KY9 A;  3TOA A;  2JYY A;  1MJ9 A;  5EX3 A;  1UUC A;  3OXL A;  1Q9B A;  2DB6 A;  1ULN A;  1WKX A;  1PPF I;  1XA6 A;  1PTQ A;  2N52 A;  3SGB I;  1ULM A;  2LEO A;  3FSY A;  4UXH A;  5JHW C;  1X4S A;  2ENN A;  1S20 A;  2V1C A;  3OVO A;  3VE5 A;  3UEY A;  2UVO A;  1Y8F A;  1TBR R;  3TJQ A;  1IY6 A;  5FUX A;  1Y1B A;  2L8E A;  5E3R A;  1U5K A;  3SEK C;  3CXL A;  2CWF A;  1BUS A;  1SGN I;  2SGP I;  2B0U C;  5E3Q A;  1NUB A;  3OL0 A;  2ORW A;  2ORV A;  5CCL A;  1MT1 A;  3GOX A;  3D00 A;  4E1R A;  1R0R I;  3BJI A;  1P9Z A;  2NU2 I;  1DS2 I;  1TOT A;  1XBT A;  2B8T A;  2DIP A;  2KMQ A;  2NU0 I;  1WGT A;  5HI7 A;  2Y0M A;  3R5C A;  1NXU A;  1TGS I;  2NU4 I;  1HEV A;  2CJS C;  2ERW A;  2JA1 A;  1P9G A;  3E2I A;  5HQ8 A;  2WVJ A;  3UGL A;  1V1I A;  2P6A C;  5J8C A;  1MJB A;  2K9H A;  1H0Z A;  2WCY A;  1FAQ A;  1HPT A;  5FUW A;  4SGB I;  1DS3 I;  3E59 A;  1IW4 A;  1N13 A;  4MPI A;  4OVO A;  1IY5 A;  1OMU A;  2OD1 A;  2ROW A;  1K7U A;  1M8B A;  2SGE I;  1CE3 A;  1W3S A;  2V1C C;  1SGQ I;  4L9M A;  1Z7K B;  5DAE A;  3TO9 A;  4FKD A;  1PJU A;  2ELI A;  3QAH A;  1VDD A;  2KMP A;  1CT2 I;  2VRW B;  1PTR A;  4JCV E;  1YTP A;  1ULK A;  3UGD A;  2JZM A;  4HGU A;  1FYB A;  3TO7 A;  1SGR I;  1XX6 A;  2J87 A;  1W4R A;  2KCX A;  2KMR A;  2GKT I;  2QQ0 A;  2QQC A;  2RC4 A;  2ENZ A;  1WGC A;  1OMT A;  1RFH A;  2GKV A;  2M5X A;  1LR8 A;  1TBN A;  3UFF A;  4AML A;  3FC3 A;  1TUR A;  1UHA A;  2GVI A;  3RU0 A;  2RIJ A;  1CT0 I;  1SGP I;  1V1H A;  1CSO I;  2QQD A;  2OVO A;  2E5R A;  3R5A A;  1Z2I A;  3MEK A; 
#chains in the Genus database with same CATH homology
 4MPI A;  1K7V A;  2LB7 A;  1K7U A;  7WGA A;  1K7T A;  2WGC A;  9WGA A;  2X3T A;  1P9Z A;  2X52 A;  1ULK A;  2DKV A;  4WP4 A;  1WGT A;  1Q9B A;  2CWG A;  1ULN A;  1WKX A;  1HEV A;  1WGC A;  1P9G A;  1ULM A;  4AML A;  1UHA A;  2UVO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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