1ULNA

Crystal structure of pokeweed lectin-d1
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
82
structure length
82
Chain Sequence
APECGERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQCDYWRCGRDFGGRLCEEDMCCSKYGWCGYSDDHCEDGCQSQCD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords lectin-D
publication title Structures of two lectins from the roots of pokeweed (Phytolacca americana).
pubmed doi rcsb
total genus 25
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2003-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1ulnA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1ulnA01
1ULMA 1K7VA 1ULNA 4AMLA 1P9GA 2LB7A 9WGAA 2UVOA 7WGAA 1K7TA 1UHAA 2CWGA 1HEVA 1WKXA 1ULKA 1WGCA 4WP4A 2X52A 1WGTA 1P9ZA 2WGCA 1Q9BA 1K7UA 2DKVA 4MPIA 2X3TA
chains in the Genus database with same CATH superfamily
2QQ0A 3TJQA 3R5AA 4HGUA 3OXGA 1ULMA 3FSXA 4E1RA 2J9RA 1TUSA 1XX6A 4AMLA 1P9GA 5EX0A 3VDPA 1SGYI 4L9MA 4A24A 1WTJA 2L7XA 9WGAA 1OMTA 7WGAA 1X74A 1PTRA 2V1CA 3GOXA 2QQCA 1OMUA 2GKVA 1HEVA 1LR8A 2SGPI 5CCLA 1Z2IA 2ELIA 2OZUA 2N17A 1KBEA 2E5RA 1DS2I 2L8EA 2NU1I 2VRWB 1YU6C 3OVOA 4WP4A 1IY6A 2X52A 1P9ZA 2N71A 3KY9A 2NU0I 1SGQI 1HPTA 2GKRI 2OU2A 1MJBA 1Q9BA 3CXLA 3R5BA 1UUCA 3UGDA 1XBTA 2BUSA 2JA1A 1TBQR 2V1CC 1HDLA 2NU3I 2ORWA 1CHOI 3OL0A 4FKDA 3E2IA 1PJUA 1BUSA 1K7VA 1PTQA 1DS3I 5FUXA 5J8FA 1BMOA 2B0UC 2NU4I 2KMRA 2KMOA 1R79A 2JXDA 1YTPA 3R5CA 1Z7KB 1N13A 3TO9A 1TIHA 5HQ8A 1ULKA 1Y8FA 1OVOA 2LEOA 2ENZA 5EX3A 1MJAA 4UXIA 2CWFA 3RU0A 1CT0I 1CE3A 1FYBA 5E3PA 2PQ8A 2DB6A 1KMAA 2YUUA 1NUBA 2E73A 2WCYA 1V1IA 4UXHA 2JW6A 2JZMA 1IY5A 1V1HA 1PCEA 1SGEI 2LUYA 3MEKA 1X4SA 1TURA 2SGEI 1TBNA 2B8TA 1IW4A 1M8BA 1FARA 2SGQI 2RC4A 1AN1I 5JHWC 3FC3A 3FSYA 5FUYA 1CT2I 2N52A 1TGSI 5E3QA 3UGIA 4SGBI 2FNFX 2OD1A 1NXUA 2M5XA 3D00A 3HH2C 3QAHA 5CCMA 3TO7A 1K7TA 1W4RA 2P6AC 4E1PA 2NU2I 1CGII 2ARPF 1SGRI 4DNCA 1SGNI 2WVJA 3TO6A 2A20A 1M8CA 1U5KA 2K9HA 3TOBA 1LR7A 1W3SA 2YQPA 1CSOI 1HJAI 5FUVA 5FUWA 5HI7A 2QQEA 1LR9A 2QPOA 2N1AB 2V53A 2WGCA 2SGDI 2W0TA 5E3RA 2CWHA 3PDNA 1H0ZA 2DKVA 2ROWA 2XRCA 2X3TA 2F3CI 3SGQI 1UVFA 1FY7A 1R0RI 2ENNA 4UXJA 2ORVA 3UEJA 1SGPI 1Y1CA 2QQDA 3SEKC 1SGDI 1ULNA 1UVGA 3E59A 2DIPA 2ERWA 1MT1A 3B4VC 1TBRR 2ODDA 2GVIA 2LB7A 2OVOA 2UVOA 2Y0MA 2J87A 2CJSC 2KMPA 1UHAA 2CWGA 2RIJA 1VDDA 2JYYA 3R5DA 3UEYA 3UGLA 2GKTI 3QTLD 3VE5A 1PPFI 2KMQA 3OXLA 3UOEA 1MJ9A 1WKXA 1XA6A 4JCVE 2SGFI 3TOAA 1CT4I 1OYVI 1TBOA 2UZ3A 3BJIA 3OXFA 3UFFA 4B6DA 5J8CA 2GIVA 1WGCA 1RFHA 1WGTA 1Y1BA 5DAEA 2KCXA 4GI3C 1FAQA 1CGJI 4OVOA 1K7UA 1TOTA 3QWPA 3VDUA 4MPIA 3SGBI 1S20A 1KBFA
chains in the Genus database with same CATH topology
1ULMA 1K7VA 1ULNA 4AMLA 1P9GA 2LB7A 9WGAA 2UVOA 7WGAA 1K7TA 1UHAA 2CWGA 1HEVA 1WKXA 1ULKA 1WGCA 4WP4A 2X52A 1WGTA 1P9ZA 2WGCA 1Q9BA 1K7UA 2DKVA 4MPIA 2X3TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ULM A;  1K7V A;  1ULN A;  4AML A;  1P9G A;  2LB7 A;  9WGA A;  2UVO A;  7WGA A;  1K7T A;  1UHA A;  2CWG A;  1HEV A;  1WKX A;  1ULK A;  1WGC A;  4WP4 A;  2X52 A;  1WGT A;  1P9Z A;  2WGC A;  1Q9B A;  1K7U A;  2DKV A;  4MPI A;  2X3T A; 
#chains in the Genus database with same CATH topology
 2QQ0 A;  3TJQ A;  3R5A A;  4HGU A;  3OXG A;  1ULM A;  3FSX A;  4E1R A;  2J9R A;  1TUS A;  1XX6 A;  4AML A;  1P9G A;  5EX0 A;  3VDP A;  1SGY I;  4L9M A;  4A24 A;  1WTJ A;  2L7X A;  9WGA A;  1OMT A;  7WGA A;  1X74 A;  1PTR A;  2V1C A;  3GOX A;  2QQC A;  1OMU A;  2GKV A;  1HEV A;  1LR8 A;  2SGP I;  5CCL A;  1Z2I A;  2ELI A;  2OZU A;  2N17 A;  1KBE A;  2E5R A;  1DS2 I;  2L8E A;  2NU1 I;  2VRW B;  1YU6 C;  3OVO A;  4WP4 A;  1IY6 A;  2X52 A;  1P9Z A;  2N71 A;  3KY9 A;  2NU0 I;  1SGQ I;  1HPT A;  2GKR I;  2OU2 A;  1MJB A;  1Q9B A;  3CXL A;  3R5B A;  1UUC A;  3UGD A;  1XBT A;  2BUS A;  2JA1 A;  1TBQ R;  2V1C C;  1HDL A;  2NU3 I;  2ORW A;  1CHO I;  3OL0 A;  4FKD A;  3E2I A;  1PJU A;  1BUS A;  1K7V A;  1PTQ A;  1DS3 I;  5FUX A;  5J8F A;  1BMO A;  2B0U C;  2NU4 I;  2KMR A;  2KMO A;  1R79 A;  2JXD A;  1YTP A;  3R5C A;  1Z7K B;  1N13 A;  3TO9 A;  1TIH A;  5HQ8 A;  1ULK A;  1Y8F A;  1OVO A;  2LEO A;  2ENZ A;  5EX3 A;  1MJA A;  4UXI A;  2CWF A;  3RU0 A;  1CT0 I;  1CE3 A;  1FYB A;  5E3P A;  2PQ8 A;  2DB6 A;  1KMA A;  2YUU A;  1NUB A;  2E73 A;  2WCY A;  1V1I A;  4UXH A;  2JW6 A;  2JZM A;  1IY5 A;  1V1H A;  1PCE A;  1SGE I;  2LUY A;  3MEK A;  1X4S A;  1TUR A;  2SGE I;  1TBN A;  2B8T A;  1IW4 A;  1M8B A;  1FAR A;  2SGQ I;  2RC4 A;  1AN1 I;  5JHW C;  3FC3 A;  3FSY A;  5FUY A;  1CT2 I;  2N52 A;  1TGS I;  5E3Q A;  3UGI A;  4SGB I;  2FNF X;  2OD1 A;  1NXU A;  2M5X A;  3D00 A;  3HH2 C;  3QAH A;  5CCM A;  3TO7 A;  1K7T A;  1W4R A;  2P6A C;  4E1P A;  2NU2 I;  1CGI I;  2ARP F;  1SGR I;  4DNC A;  1SGN I;  2WVJ A;  3TO6 A;  2A20 A;  1M8C A;  1U5K A;  2K9H A;  3TOB A;  1LR7 A;  1W3S A;  2YQP A;  1CSO I;  1HJA I;  5FUV A;  5FUW A;  5HI7 A;  2QQE A;  1LR9 A;  2QPO A;  2N1A B;  2V53 A;  2WGC A;  2SGD I;  2W0T A;  5E3R A;  2CWH A;  3PDN A;  1H0Z A;  2DKV A;  2ROW A;  2XRC A;  2X3T A;  2F3C I;  3SGQ I;  1UVF A;  1FY7 A;  1R0R I;  2ENN A;  4UXJ A;  2ORV A;  3UEJ A;  1SGP I;  1Y1C A;  2QQD A;  3SEK C;  1SGD I;  1ULN A;  1UVG A;  3E59 A;  2DIP A;  2ERW A;  1MT1 A;  3B4V C;  1TBR R;  2ODD A;  2GVI A;  2LB7 A;  2OVO A;  2UVO A;  2Y0M A;  2J87 A;  2CJS C;  2KMP A;  1UHA A;  2CWG A;  2RIJ A;  1VDD A;  2JYY A;  3R5D A;  3UEY A;  3UGL A;  2GKT I;  3QTL D;  3VE5 A;  1PPF I;  2KMQ A;  3OXL A;  3UOE A;  1MJ9 A;  1WKX A;  1XA6 A;  4JCV E;  2SGF I;  3TOA A;  1CT4 I;  1OYV I;  1TBO A;  2UZ3 A;  3BJI A;  3OXF A;  3UFF A;  4B6D A;  5J8C A;  2GIV A;  1WGC A;  1RFH A;  1WGT A;  1Y1B A;  5DAE A;  2KCX A;  4GI3 C;  1FAQ A;  1CGJ I;  4OVO A;  1K7U A;  1TOT A;  3QWP A;  3VDU A;  4MPI A;  3SGB I;  1S20 A;  1KBF A; 
#chains in the Genus database with same CATH homology
 1ULM A;  1K7V A;  1ULN A;  4AML A;  1P9G A;  2LB7 A;  9WGA A;  2UVO A;  7WGA A;  1K7T A;  1UHA A;  2CWG A;  1HEV A;  1WKX A;  1ULK A;  1WGC A;  4WP4 A;  2X52 A;  1WGT A;  1P9Z A;  2WGC A;  1Q9B A;  1K7U A;  2DKV A;  4MPI A;  2X3T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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