1ULXA

Partially photolyzed structure of co-bound heme-heme oxygenase complex
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
212
structure length
212
Chain Sequence
QDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Heme oxygenase 1
publication title CO-trapping site in heme oxygenase revealed by photolysis of its co-bound heme complex: mechanism of escaping from product inhibition
pubmed doi rcsb
source organism Rattus norvegicus
total genus 88
structure length 212
sequence length 212
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2003-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 1ulxA00
1N45A 1IX4A 1S8CA 4G8WA 2GM8A 4WX0A 1XK2A 2RGZA 3MOOA 3CZYA 4WMHA 3HNHA 1WNWA 1P3UA 1J02A 1OYKA 1TYHA 1OTWA 3I9UA 1WZFA 4WWZA 1WWMA 2DY5A 2QZCA 4G7TA 1WE1A 1WNXA 1TWRA 2F2GA 1XJZA 1OZRA 1VGIA 1DVGA 1OZLA 1WOWA 4GPCA 1WZGA 1IVJA 1IW1A 2E7EA 3B5OA 1XK0A 2A2OA 1XK1A 4WD4A 1OTVA 1WOVA 2QCXA 1XK3A 1TO9B 2RD3A 4G7LA 1J2CA 4G8PA 2Z68A 1P3VA 3K4FA 2GM7A 3TGMA 4NY7A 1V8XA 1RCWA 1SK7A 1S13A 2Q4XA 1IRMA 2Q32A 3HMLA 3HOKA 4G7PA 4GPHA 4G98A 1OZEA 1TO9A 2ZVUA 1T5PA 3NO6A 1Z72A 3IBXA 1YAFA 3MVUA 2QPPA 1YAKA 3OQLA 4G99A 1RTWA 4G8UA 1DVEA 3HLXA 2A2MA 1OYLA 1IX3A 3DDEA 3I9TA 1N3UA 4LQXA 4GPFA 3I8RA 4RAJA 4GOHA 1NI6A 1ULXA 3BJDA 4MECA 1J77A 1UDDA 1WOXA 1P3TA 4WWJA 5BTQA 2A6BA 3RM5A 1WNVA 1UBBA 1OZWA 1TWNA 1WZDA 4G7UA 1IW0A 3B5PA 4FN6A
chains in the Genus database with same CATH superfamily
1N45A 1IX4A 1S8CA 4G8WA 2GM8A 4WX0A 1XK2A 2RGZA 3MOOA 3CZYA 4WMHA 3HNHA 1WNWA 1P3UA 1J02A 1OYKA 1TYHA 1OTWA 2LCUA 3I9UA 1WZFA 4WWZA 1WWMA 2DY5A 2QZCA 4G7TA 1WE1A 1WNXA 1TWRA 2F2GA 1XJZA 1OZRA 1VGIA 1DVGA 1OZLA 1WOWA 4GPCA 1WZGA 1IVJA 1IW1A 2E7EA 3B5OA 1XK0A 2A2OA 1XK1A 4WD4A 1OTVA 1WOVA 2QCXA 1XK3A 1TO9B 2RD3A 4G7LA 1J2CA 4G8PA 2Z68A 1P3VA 3K4FA 2GM7A 3TGMA 4NY7A 1V8XA 1RCWA 1SK7A 1S13A 2Q4XA 1IRMA 2Q32A 3HMLA 3HOKA 4G7PA 4GPHA 4G98A 1OZEA 1TO9A 2ZVUA 1T5PA 3NO6A 1Z72A 3IBXA 1YAFA 3MVUA 2QPPA 1YAKA 3OQLA 4G99A 1RTWA 4G8UA 1DVEA 3HLXA 2A2MA 1OYLA 1IX3A 3DDEA 3I9TA 1N3UA 4LQXA 4GPFA 3I8RA 4RAJA 4GOHA 1NI6A 1ULXA 3BJDA 4MECA 1J77A 1UDDA 1WOXA 1P3TA 4WWJA 5BTQA 2A6BA 3RM5A 1WNVA 1UBBA 1OZWA 1TWNA 1WZDA 4G7UA 1IW0A 3B5PA 4FN6A
chains in the Genus database with same CATH topology
1N45A 1IX4A 1S8CA 4G8WA 2GM8A 4WX0A 1XK2A 2RGZA 3MOOA 3CZYA 4WMHA 3HNHA 1WNWA 1P3UA 1J02A 1OYKA 1TYHA 1OTWA 3I9UA 1WZFA 4WWZA 1WWMA 2DY5A 2QZCA 4G7TA 1WE1A 1WNXA 1TWRA 2F2GA 1XJZA 1OZRA 1VGIA 1DVGA 1OZLA 1WOWA 4GPCA 1WZGA 1IVJA 1IW1A 2E7EA 3B5OA 1XK0A 2A2OA 1XK1A 4WD4A 1OTVA 1WOVA 2QCXA 1XK3A 1TO9B 2RD3A 4G7LA 1J2CA 4G8PA 2Z68A 1P3VA 3K4FA 2GM7A 3TGMA 4NY7A 1V8XA 1RCWA 1SK7A 1S13A 2Q4XA 1IRMA 2Q32A 3HMLA 3HOKA 4G7PA 4GPHA 4G98A 1OZEA 1TO9A 2ZVUA 1T5PA 3NO6A 1Z72A 3IBXA 1YAFA 3MVUA 2QPPA 1YAKA 3OQLA 4G99A 1RTWA 4G8UA 1DVEA 3HLXA 2A2MA 1OYLA 1IX3A 3DDEA 3I9TA 1N3UA 4LQXA 4GPFA 3I8RA 4RAJA 4GOHA 1NI6A 1ULXA 3BJDA 4MECA 1J77A 1UDDA 1WOXA 1P3TA 4WWJA 5BTQA 2A6BA 3RM5A 1WNVA 1UBBA 1OZWA 1TWNA 1WZDA 4G7UA 1IW0A 3B5PA 4FN6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N45 A;  1IX4 A;  1S8C A;  4G8W A;  2GM8 A;  4WX0 A;  1XK2 A;  2RGZ A;  3MOO A;  3CZY A;  4WMH A;  3HNH A;  1WNW A;  1P3U A;  1J02 A;  1OYK A;  1TYH A;  1OTW A;  3I9U A;  1WZF A;  4WWZ A;  1WWM A;  2DY5 A;  2QZC A;  4G7T A;  1WE1 A;  1WNX A;  1TWR A;  2F2G A;  1XJZ A;  1OZR A;  1VGI A;  1DVG A;  1OZL A;  1WOW A;  4GPC A;  1WZG A;  1IVJ A;  1IW1 A;  2E7E A;  3B5O A;  1XK0 A;  2A2O A;  1XK1 A;  4WD4 A;  1OTV A;  1WOV A;  2QCX A;  1XK3 A;  1TO9 B;  2RD3 A;  4G7L A;  1J2C A;  4G8P A;  2Z68 A;  1P3V A;  3K4F A;  2GM7 A;  3TGM A;  4NY7 A;  1V8X A;  1RCW A;  1SK7 A;  1S13 A;  2Q4X A;  1IRM A;  2Q32 A;  3HML A;  3HOK A;  4G7P A;  4GPH A;  4G98 A;  1OZE A;  1TO9 A;  2ZVU A;  1T5P A;  3NO6 A;  1Z72 A;  3IBX A;  1YAF A;  3MVU A;  2QPP A;  1YAK A;  3OQL A;  4G99 A;  1RTW A;  4G8U A;  1DVE A;  3HLX A;  2A2M A;  1OYL A;  1IX3 A;  3DDE A;  3I9T A;  1N3U A;  4LQX A;  4GPF A;  3I8R A;  4RAJ A;  4GOH A;  1NI6 A;  1ULX A;  3BJD A;  4MEC A;  1J77 A;  1UDD A;  1WOX A;  1P3T A;  4WWJ A;  5BTQ A;  2A6B A;  3RM5 A;  1WNV A;  1UBB A;  1OZW A;  1TWN A;  1WZD A;  4G7U A;  1IW0 A;  3B5P A;  4FN6 A; 
#chains in the Genus database with same CATH topology
 1N45 A;  1IX4 A;  1S8C A;  4G8W A;  2GM8 A;  4WX0 A;  1XK2 A;  2RGZ A;  3MOO A;  3CZY A;  4WMH A;  3HNH A;  1WNW A;  1P3U A;  1J02 A;  1OYK A;  1TYH A;  1OTW A;  2LCU A;  3I9U A;  1WZF A;  4WWZ A;  1WWM A;  2DY5 A;  2QZC A;  4G7T A;  1WE1 A;  1WNX A;  1TWR A;  2F2G A;  1XJZ A;  1OZR A;  1VGI A;  1DVG A;  1OZL A;  1WOW A;  4GPC A;  1WZG A;  1IVJ A;  1IW1 A;  2E7E A;  3B5O A;  1XK0 A;  2A2O A;  1XK1 A;  4WD4 A;  1OTV A;  1WOV A;  2QCX A;  1XK3 A;  1TO9 B;  2RD3 A;  4G7L A;  1J2C A;  4G8P A;  2Z68 A;  1P3V A;  3K4F A;  2GM7 A;  3TGM A;  4NY7 A;  1V8X A;  1RCW A;  1SK7 A;  1S13 A;  2Q4X A;  1IRM A;  2Q32 A;  3HML A;  3HOK A;  4G7P A;  4GPH A;  4G98 A;  1OZE A;  1TO9 A;  2ZVU A;  1T5P A;  3NO6 A;  1Z72 A;  3IBX A;  1YAF A;  3MVU A;  2QPP A;  1YAK A;  3OQL A;  4G99 A;  1RTW A;  4G8U A;  1DVE A;  3HLX A;  2A2M A;  1OYL A;  1IX3 A;  3DDE A;  3I9T A;  1N3U A;  4LQX A;  4GPF A;  3I8R A;  4RAJ A;  4GOH A;  1NI6 A;  1ULX A;  3BJD A;  4MEC A;  1J77 A;  1UDD A;  1WOX A;  1P3T A;  4WWJ A;  5BTQ A;  2A6B A;  3RM5 A;  1WNV A;  1UBB A;  1OZW A;  1TWN A;  1WZD A;  4G7U A;  1IW0 A;  3B5P A;  4FN6 A; 
#chains in the Genus database with same CATH homology
 1N45 A;  1IX4 A;  1S8C A;  4G8W A;  2GM8 A;  4WX0 A;  1XK2 A;  2RGZ A;  3MOO A;  3CZY A;  4WMH A;  3HNH A;  1WNW A;  1P3U A;  1J02 A;  1OYK A;  1TYH A;  1OTW A;  3I9U A;  1WZF A;  4WWZ A;  1WWM A;  2DY5 A;  2QZC A;  4G7T A;  1WE1 A;  1WNX A;  1TWR A;  2F2G A;  1XJZ A;  1OZR A;  1VGI A;  1DVG A;  1OZL A;  1WOW A;  4GPC A;  1WZG A;  1IVJ A;  1IW1 A;  2E7E A;  3B5O A;  1XK0 A;  2A2O A;  1XK1 A;  4WD4 A;  1OTV A;  1WOV A;  2QCX A;  1XK3 A;  1TO9 B;  2RD3 A;  4G7L A;  1J2C A;  4G8P A;  2Z68 A;  1P3V A;  3K4F A;  2GM7 A;  3TGM A;  4NY7 A;  1V8X A;  1RCW A;  1SK7 A;  1S13 A;  2Q4X A;  1IRM A;  2Q32 A;  3HML A;  3HOK A;  4G7P A;  4GPH A;  4G98 A;  1OZE A;  1TO9 A;  2ZVU A;  1T5P A;  3NO6 A;  1Z72 A;  3IBX A;  1YAF A;  3MVU A;  2QPP A;  1YAK A;  3OQL A;  4G99 A;  1RTW A;  4G8U A;  1DVE A;  3HLX A;  2A2M A;  1OYL A;  1IX3 A;  3DDE A;  3I9T A;  1N3U A;  4LQX A;  4GPF A;  3I8R A;  4RAJ A;  4GOH A;  1NI6 A;  1ULX A;  3BJD A;  4MEC A;  1J77 A;  1UDD A;  1WOX A;  1P3T A;  4WWJ A;  5BTQ A;  2A6B A;  3RM5 A;  1WNV A;  1UBB A;  1OZW A;  1TWN A;  1WZD A;  4G7U A;  1IW0 A;  3B5P A;  4FN6 A; 
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