1UOTP

Human cd55 domains 3 & 4
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
125
structure length
125
Chain Sequence
KSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Regulator of complement pathway
molecule keywords COMPLEMENT DECAY-ACCELERATING FACTOR
publication title Mapping Cd55 Function. The Structure of Two Pathogen-Binding Domains at 1.7 A
pubmed doi rcsb
source organism Homo sapiens
total genus 16
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2003-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1uotP02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1uotP01
1QGBA 4IGDA 1MD8A 5FO8C 4C16A 1CKLA 3ZRZA 3ZD2A 1U5MA 1GKNA 1H04P 1OJWA 4AYMA 4FXGG 2BZMA 2XQWC 5HYPA 4YNXA 2RKYA 4AYIA 2MCYA 4ONTD 1SRZA 3OEDC 3OP8A 5HYUB 3ZD1A 3M7PA 1E8BA 2KRIA 2RKZA 4B2RA 4F4OC 1PPQA 1OK3A 4JHSA 3KXVA 4LOTA 5JPMG 4MUCA 2IZ3A 1FBRA 4KKDA 5I0QB 1OK1A 4ZH1D 1OK9A 2JGXA 2ERJA 3EJHA 3O8EB 1ELVA 1H03P 2XRDA 2EHFA 2RL0A 2V8EA 2YBYA 1GKGA 4AYEA 2EC3A 5HZPB 1GHQB 3GOVA 2MCZA 4K12A 3SW0X 2CG7A 4WJG2 2B5ID 1Z92B 1H2QP 3L89M 3TVJA 4CSYA 2W80A 3KZJA 1E88A 3INBC 4PZ5A 3T5OA 2A55A 2CKUA 1G4FA 2O39C 3IX0A 1TPMA 1NWVA 1HFHA 1OK2A 3NFPI 4A5WB 1UOTP 2W81A 2QY0A 1HFIA 2JRAA 2JGWA 1Q3XA 3IU3I 1VVDA 1G4GA 2XWJI 1TPGA 2RLQA 1LY2A 1C1ZA 2G7IA 4AYDA 2RLPA 2LOJA 2UWNA 3MQLA 2IZ4A 1OJYA 1HCCA 4J38B 4B2SA 1H2PP 2XWBF 3RJ3D 3OXUD 1MD7A 3CALA 1SS2A 3GXEA 2CG6A 1O9AA 1GPZA 2KMSA 2YRAA 1OJVA 1VVCA 2XRBA 3ERBA 3R62A 5HYTB 2WIIC 1QO6A 4DJZA 1QUBA 4LOSA 1ZJKA 1E5GA 1TPNA
chains in the Genus database with same CATH superfamily
1QGBA 4IGDA 1MD8A 5FO8C 4PO7A 4C16A 1CKLA 3ZRZA 3ZD2A 1U5MA 1GKNA 1H04P 1OJWA 4AYMA 4FXGG 2BZMA 2XQWC 5HYPA 4MSLA 4YNXA 2RKYA 4AYIA 5DN5A 2MCYA 4ONTD 1SRZA 3OEDC 3OP8A 5HYUB 3ZLDA 3ZD1A 3M7PA 2X2ZA 1E8BA 2KRIA 2RKZA 4B2RA 4F4OC 1PPQA 1OK3A 4JHSA 3KXVA 4LOTA 5JPMG 4MUCA 2IZ3A 1FBRA 4KKDA 5I0QB 1OK1A 4ZH1D 1OK9A 2JGXA 2ERJA 3EJHA 3O8EB 1ELVA 1H03P 2XRDA 2EHFA 2RL0A 2V8EA 2YBYA 1GKGA 3FGTA 4AYEA 2EC3A 5HZPB 1GHQB 3GOVA 2MCZA 4K12A 3SW0X 3WSXA 2CG7A 3K3TA 2B5ID 4N7EA 4WJG2 1Z92B 1H2QP 3L89M 3NJAA 3TVJA 4CSYA 2W80A 3KZJA 1E88A 3INBC 4PZ5A 3T5OA 2A55A 2CKUA 1G4FA 2O39C 3IX0A 1TPMA 1NWVA 1RLHA 2Y8RA 1HFHA 1OK2A 3NFPI 4A5WB 1UOTP 2I2LA 2W81A 2QY0A 1HFIA 3ZLEA 2JRAA 2JGWA 1Q3XA 3IU3I 1VVDA 1G4GA 2XWJI 4BWCA 1TPGA 2RLQA 1LY2A 1C1ZA 2G7IA 4AYDA 2RLPA 2LOJA 2Y8TA 2UWNA 3MQLA 2IZ4A 1OJYA 1HCCA 4J38B 3WSYA 4B2SA 1H2PP 2XWBF 3RJ3D 3OXUD 4YIZA 1MD7A 3CALA 1SS2A 4APLA 3GXEA 3VWOA 2CG6A 1O9AA 1GPZA 2KMSA 2YRAA 1OJVA 1VVCA 2Y8SA 2XRBA 3ERBA 3R62A 5HYTB 2WIIC 1QO6A 4DJZA 1QUBA 4LOSA 1ZJKA 1E5GA 3CI0J 3F6KA 5DN4A 1TPNA 2ZYCA 3FGRA
chains in the Genus database with same CATH topology
1QGBA 4IGDA 1MD8A 5FO8C 4C16A 1CKLA 3ZRZA 3ZD2A 1U5MA 1GKNA 1H04P 1OJWA 4AYMA 4FXGG 2BZMA 2XQWC 5HYPA 4YNXA 2RKYA 4AYIA 2MCYA 4ONTD 1SRZA 3OEDC 3OP8A 5HYUB 3ZD1A 3M7PA 1E8BA 2KRIA 2RKZA 4B2RA 4F4OC 1PPQA 1OK3A 4JHSA 3KXVA 4LOTA 5JPMG 4MUCA 2IZ3A 1FBRA 4KKDA 5I0QB 1OK1A 4ZH1D 1OK9A 2JGXA 2ERJA 3EJHA 3O8EB 1ELVA 1H03P 2XRDA 2EHFA 2RL0A 2V8EA 2YBYA 1GKGA 4AYEA 2EC3A 5HZPB 1GHQB 3GOVA 2MCZA 4K12A 3SW0X 2CG7A 4WJG2 2B5ID 1Z92B 1H2QP 3L89M 3TVJA 4CSYA 2W80A 3KZJA 1E88A 3INBC 4PZ5A 3T5OA 2A55A 2CKUA 1G4FA 2O39C 3IX0A 1TPMA 1NWVA 1HFHA 1OK2A 3NFPI 4A5WB 1UOTP 2W81A 2QY0A 1HFIA 2JRAA 2JGWA 1Q3XA 3IU3I 1VVDA 1G4GA 2XWJI 1TPGA 2RLQA 1LY2A 1C1ZA 2G7IA 4AYDA 2RLPA 2LOJA 2UWNA 3MQLA 2IZ4A 1OJYA 1HCCA 4J38B 4B2SA 1H2PP 2XWBF 3RJ3D 3OXUD 1MD7A 3CALA 1SS2A 3GXEA 2CG6A 1O9AA 1GPZA 2KMSA 2YRAA 1OJVA 1VVCA 2XRBA 3ERBA 3R62A 5HYTB 2WIIC 1QO6A 4DJZA 1QUBA 4LOSA 1ZJKA 1E5GA 1TPNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QGB A;  4IGD A;  1MD8 A;  5FO8 C;  4C16 A;  1CKL A;  3ZRZ A;  3ZD2 A;  1U5M A;  1GKN A;  1H04 P;  1OJW A;  4AYM A;  4FXG G;  2BZM A;  2XQW C;  5HYP A;  4YNX A;  2RKY A;  4AYI A;  2MCY A;  4ONT D;  1SRZ A;  3OED C;  3OP8 A;  5HYU B;  3ZD1 A;  3M7P A;  1E8B A;  2KRI A;  2RKZ A;  4B2R A;  4F4O C;  1PPQ A;  1OK3 A;  4JHS A;  3KXV A;  4LOT A;  5JPM G;  4MUC A;  2IZ3 A;  1FBR A;  4KKD A;  5I0Q B;  1OK1 A;  4ZH1 D;  1OK9 A;  2JGX A;  2ERJ A;  3EJH A;  3O8E B;  1ELV A;  1H03 P;  2XRD A;  2EHF A;  2RL0 A;  2V8E A;  2YBY A;  1GKG A;  4AYE A;  2EC3 A;  5HZP B;  1GHQ B;  3GOV A;  2MCZ A;  4K12 A;  3SW0 X;  2CG7 A;  4WJG 2;  2B5I D;  1Z92 B;  1H2Q P;  3L89 M;  3TVJ A;  4CSY A;  2W80 A;  3KZJ A;  1E88 A;  3INB C;  4PZ5 A;  3T5O A;  2A55 A;  2CKU A;  1G4F A;  2O39 C;  3IX0 A;  1TPM A;  1NWV A;  1HFH A;  1OK2 A;  3NFP I;  4A5W B;  1UOT P;  2W81 A;  2QY0 A;  1HFI A;  2JRA A;  2JGW A;  1Q3X A;  3IU3 I;  1VVD A;  1G4G A;  2XWJ I;  1TPG A;  2RLQ A;  1LY2 A;  1C1Z A;  2G7I A;  4AYD A;  2RLP A;  2LOJ A;  2UWN A;  3MQL A;  2IZ4 A;  1OJY A;  1HCC A;  4J38 B;  4B2S A;  1H2P P;  2XWB F;  3RJ3 D;  3OXU D;  1MD7 A;  3CAL A;  1SS2 A;  3GXE A;  2CG6 A;  1O9A A;  1GPZ A;  2KMS A;  2YRA A;  1OJV A;  1VVC A;  2XRB A;  3ERB A;  3R62 A;  5HYT B;  2WII C;  1QO6 A;  4DJZ A;  1QUB A;  4LOS A;  1ZJK A;  1E5G A;  1TPN A; 
#chains in the Genus database with same CATH topology
 1QGB A;  4IGD A;  1MD8 A;  5FO8 C;  4PO7 A;  4C16 A;  1CKL A;  3ZRZ A;  3ZD2 A;  1U5M A;  1GKN A;  1H04 P;  1OJW A;  4AYM A;  4FXG G;  2BZM A;  2XQW C;  5HYP A;  4MSL A;  4YNX A;  2RKY A;  4AYI A;  5DN5 A;  2MCY A;  4ONT D;  1SRZ A;  3OED C;  3OP8 A;  5HYU B;  3ZLD A;  3ZD1 A;  3M7P A;  2X2Z A;  1E8B A;  2KRI A;  2RKZ A;  4B2R A;  4F4O C;  1PPQ A;  1OK3 A;  4JHS A;  3KXV A;  4LOT A;  5JPM G;  4MUC A;  2IZ3 A;  1FBR A;  4KKD A;  5I0Q B;  1OK1 A;  4ZH1 D;  1OK9 A;  2JGX A;  2ERJ A;  3EJH A;  3O8E B;  1ELV A;  1H03 P;  2XRD A;  2EHF A;  2RL0 A;  2V8E A;  2YBY A;  1GKG A;  3FGT A;  4AYE A;  2EC3 A;  5HZP B;  1GHQ B;  3GOV A;  2MCZ A;  4K12 A;  3SW0 X;  3WSX A;  2CG7 A;  3K3T A;  2B5I D;  4N7E A;  4WJG 2;  1Z92 B;  1H2Q P;  3L89 M;  3NJA A;  3TVJ A;  4CSY A;  2W80 A;  3KZJ A;  1E88 A;  3INB C;  4PZ5 A;  3T5O A;  2A55 A;  2CKU A;  1G4F A;  2O39 C;  3IX0 A;  1TPM A;  1NWV A;  1RLH A;  2Y8R A;  1HFH A;  1OK2 A;  3NFP I;  4A5W B;  1UOT P;  2I2L A;  2W81 A;  2QY0 A;  1HFI A;  3ZLE A;  2JRA A;  2JGW A;  1Q3X A;  3IU3 I;  1VVD A;  1G4G A;  2XWJ I;  4BWC A;  1TPG A;  2RLQ A;  1LY2 A;  1C1Z A;  2G7I A;  4AYD A;  2RLP A;  2LOJ A;  2Y8T A;  2UWN A;  3MQL A;  2IZ4 A;  1OJY A;  1HCC A;  4J38 B;  3WSY A;  4B2S A;  1H2P P;  2XWB F;  3RJ3 D;  3OXU D;  4YIZ A;  1MD7 A;  3CAL A;  1SS2 A;  4APL A;  3GXE A;  3VWO A;  2CG6 A;  1O9A A;  1GPZ A;  2KMS A;  2YRA A;  1OJV A;  1VVC A;  2Y8S A;  2XRB A;  3ERB A;  3R62 A;  5HYT B;  2WII C;  1QO6 A;  4DJZ A;  1QUB A;  4LOS A;  1ZJK A;  1E5G A;  3CI0 J;  3F6K A;  5DN4 A;  1TPN A;  2ZYC A;  3FGR A; 
#chains in the Genus database with same CATH homology
 1QGB A;  4IGD A;  1MD8 A;  5FO8 C;  4C16 A;  1CKL A;  3ZRZ A;  3ZD2 A;  1U5M A;  1GKN A;  1H04 P;  1OJW A;  4AYM A;  4FXG G;  2BZM A;  2XQW C;  5HYP A;  4YNX A;  2RKY A;  4AYI A;  2MCY A;  4ONT D;  1SRZ A;  3OED C;  3OP8 A;  5HYU B;  3ZD1 A;  3M7P A;  1E8B A;  2KRI A;  2RKZ A;  4B2R A;  4F4O C;  1PPQ A;  1OK3 A;  4JHS A;  3KXV A;  4LOT A;  5JPM G;  4MUC A;  2IZ3 A;  1FBR A;  4KKD A;  5I0Q B;  1OK1 A;  4ZH1 D;  1OK9 A;  2JGX A;  2ERJ A;  3EJH A;  3O8E B;  1ELV A;  1H03 P;  2XRD A;  2EHF A;  2RL0 A;  2V8E A;  2YBY A;  1GKG A;  4AYE A;  2EC3 A;  5HZP B;  1GHQ B;  3GOV A;  2MCZ A;  4K12 A;  3SW0 X;  2CG7 A;  4WJG 2;  2B5I D;  1Z92 B;  1H2Q P;  3L89 M;  3TVJ A;  4CSY A;  2W80 A;  3KZJ A;  1E88 A;  3INB C;  4PZ5 A;  3T5O A;  2A55 A;  2CKU A;  1G4F A;  2O39 C;  3IX0 A;  1TPM A;  1NWV A;  1HFH A;  1OK2 A;  3NFP I;  4A5W B;  1UOT P;  2W81 A;  2QY0 A;  1HFI A;  2JRA A;  2JGW A;  1Q3X A;  3IU3 I;  1VVD A;  1G4G A;  2XWJ I;  1TPG A;  2RLQ A;  1LY2 A;  1C1Z A;  2G7I A;  4AYD A;  2RLP A;  2LOJ A;  2UWN A;  3MQL A;  2IZ4 A;  1OJY A;  1HCC A;  4J38 B;  4B2S A;  1H2P P;  2XWB F;  3RJ3 D;  3OXU D;  1MD7 A;  3CAL A;  1SS2 A;  3GXE A;  2CG6 A;  1O9A A;  1GPZ A;  2KMS A;  2YRA A;  1OJV A;  1VVC A;  2XRB A;  3ERB A;  3R62 A;  5HYT B;  2WII C;  1QO6 A;  4DJZ A;  1QUB A;  4LOS A;  1ZJK A;  1E5G A;  1TPN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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