1UPPI

Spinach rubisco in complex with 2-carboxyarabinitol 2 bisphosphate and calcium.
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
123
structure length
123
Chain Sequence
MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKPAGY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
publication title Calcium Supports Loop Closure But not Catalysis in Rubisco
pubmed doi rcsb
total genus 25
structure length 123
sequence length 123
chains with identical sequence J, K, L
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2003-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 1uppI00
3RUBS 1UZHC 1RSCI 1RBOC 2V6AI 1UPPI 1RLCS 3AXKS 1EJ7S 2V67I 1BWVS 1AUSS 3AXMS 3ZXWB 2VDII 1UPMC 1RXOC 4HHHS 2VDHI 1UW9C 1BXNI 1IR21 4F0KB 4RUBS 1UWAC 1IWAB 1UZDC 1IR1S 1WDDS 1RCOC 2V63I 8RUCI 1AA1C 2V68I 4F0MB 4MKVS 1RCXC 1RBLI 1GK8I 2YBVB 4F0HB 1RLDS 2V69I 1SVDM
chains in the Genus database with same CATH superfamily
3RUBS 2FHZA 1UZHC 5DM60 5DM70 1I2AA 1RSCI 1RBOC 2V6AI 4QGBA 1UPPI 1RLCS 1AD2A 3AXKS 4DFCB 4LQ4A 1EJ7S 2V67I 3QOYA 3TG8A 1BWVS 1AUSS 3AXMS 3ZXWB 4QVIA 1MZPA 3FPNA 3ZQJA 2VDII 1UPMC 1RXOC 4HHHS 2VDHI 1UW9C 4QG3A 1BXNI 1IR21 4F0KB 4RUBS 3U56A 1UWAC 1IWAB 1DWUA 1UZDC 1IR1S 1WDDS 1RCOC 4REOA 2DFXI 3U4MA 2V63I 8RUCI 1ZHOA 1AA1C 2HW8A 2V68I 4F0MB 4MKVS 1RCXC 1RBLI 3UMYA 1GK8I 2YBVB 1U63A 1CJSA 4F0HB 4F9TA 1RLDS 2V69I 1SVDM
chains in the Genus database with same CATH topology
3RUBS 1UZHC 1RSCI 1RBOC 2V6AI 1UPPI 1RLCS 3AXKS 1EJ7S 2V67I 1BWVS 1AUSS 3AXMS 3ZXWB 2VDII 1UPMC 1RXOC 4HHHS 2VDHI 1UW9C 1BXNI 1IR21 4F0KB 4RUBS 1UWAC 1IWAB 1UZDC 1IR1S 1WDDS 1RCOC 2V63I 8RUCI 1AA1C 2V68I 4F0MB 4MKVS 1RCXC 1RBLI 1GK8I 2YBVB 4F0HB 1RLDS 2V69I 1SVDM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RUB S;  1UZH C;  1RSC I;  1RBO C;  2V6A I;  1UPP I;  1RLC S;  3AXK S;  1EJ7 S;  2V67 I;  1BWV S;  1AUS S;  3AXM S;  3ZXW B;  2VDI I;  1UPM C;  1RXO C;  4HHH S;  2VDH I;  1UW9 C;  1BXN I;  1IR2 1;  4F0K B;  4RUB S;  1UWA C;  1IWA B;  1UZD C;  1IR1 S;  1WDD S;  1RCO C;  2V63 I;  8RUC I;  1AA1 C;  2V68 I;  4F0M B;  4MKV S;  1RCX C;  1RBL I;  1GK8 I;  2YBV B;  4F0H B;  1RLD S;  2V69 I;  1SVD M; 
#chains in the Genus database with same CATH topology
 3RUB S;  2FHZ A;  1UZH C;  5DM6 0;  5DM7 0;  1I2A A;  1RSC I;  1RBO C;  2V6A I;  4QGB A;  1UPP I;  1RLC S;  1AD2 A;  3AXK S;  4DFC B;  4LQ4 A;  1EJ7 S;  2V67 I;  3QOY A;  3TG8 A;  1BWV S;  1AUS S;  3AXM S;  3ZXW B;  4QVI A;  1MZP A;  3FPN A;  3ZQJ A;  2VDI I;  1UPM C;  1RXO C;  4HHH S;  2VDH I;  1UW9 C;  4QG3 A;  1BXN I;  1IR2 1;  4F0K B;  4RUB S;  3U56 A;  1UWA C;  1IWA B;  1DWU A;  1UZD C;  1IR1 S;  1WDD S;  1RCO C;  4REO A;  2DFX I;  3U4M A;  2V63 I;  8RUC I;  1ZHO A;  1AA1 C;  2HW8 A;  2V68 I;  4F0M B;  4MKV S;  1RCX C;  1RBL I;  3UMY A;  1GK8 I;  2YBV B;  1U63 A;  1CJS A;  4F0H B;  4F9T A;  1RLD S;  2V69 I;  1SVD M; 
#chains in the Genus database with same CATH homology
 3RUB S;  1UZH C;  1RSC I;  1RBO C;  2V6A I;  1UPP I;  1RLC S;  3AXK S;  1EJ7 S;  2V67 I;  1BWV S;  1AUS S;  3AXM S;  3ZXW B;  2VDI I;  1UPM C;  1RXO C;  4HHH S;  2VDH I;  1UW9 C;  1BXN I;  1IR2 1;  4F0K B;  4RUB S;  1UWA C;  1IWA B;  1UZD C;  1IR1 S;  1WDD S;  1RCO C;  2V63 I;  8RUC I;  1AA1 C;  2V68 I;  4F0M B;  4MKV S;  1RCX C;  1RBL I;  1GK8 I;  2YBV B;  4F0H B;  1RLD S;  2V69 I;  1SVD M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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