1URBA

Alkaline phosphatase (n51mg)
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
446
structure length
446
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGNGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Alkaline phosphatase
source organism Escherichia coli
publication title Kinetic and structural consequences of replacing the aspartate bridge by asparagine in the catalytic metal triad of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
total genus 163
structure length 446
sequence length 446
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1996-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1urbA00
1E2SP 3MK1A 4UPHA 3UN3A 5TJ3A 3TX0A 1KHJA 2ZKTA 4UPIA 1ELYA 2GSOA 1O98A 5GRRA 2IUCB 1O99A 3OT9A 3WBHA 5LQQA 1URBA 2W5TA 4B56A 5L0BA 2W5SA 1URAA 3BDGB 1ALIA 5DLWA 3WAVA 1EW2A 3BDHA 2G9YA 4KJGA 3M8ZA 1AJBA 3UO0A 3UNYA 3MK2A 4GTYA 1HDHA 2ANHA 3TG0A 2GLQA 3MK0A 3BDFA 1N2LA 3NKNA 4NWJA 3UN5A 5L0KA 2W5RA 1ZEFA 5LIAA 4LRFA 3M8YA 1SHNA 1AJAA 3CMRA 3NKMA 4MHXA 1EW9A 1ALHA 2W8SA 5IJSA 1B8JA 1EI6A 4LRBA 5K4PA 4CXSA 4MY4A 2GSNA 3IGZB 4LR2A 4LRAA 4CXKA 2IFYA 4UPKA 4ZG9A 1Y7AA 4KAVA 1P49A 1ALJA 2W5QA 1ELZA 3DYCA 2IUCA 1ED8A 4CYRA 4KAYA 3NKQA 5AJ9A 5DLVA 4GTXA 3BDGA 2W5XA 2X98A 1HJKA 2XR9A 3M7VA 2GSUA 4UPLA 2QZUA 1ZEDA 1KH5A 3B5QA 1KHLA 3A52A 5HRTA 3KD8A 3NKRA 4LR7A 4LQYA 5GOVA 3M8WA 3NKPA 3Q3QA 1EW8A 1KH7A 1ALKA 1K7HA 3IGYB 3T00A 4LRDA 2D1GA 3IDDA 5IJQA 3DPCA 4LR8A 3WAWA 1E3CP 3T01A 4KJDA 3LXQA 4LREA 3T02A 1ANIA 3NVLA 5L0EA 5C66A 2GA3A 1FSUA 4ZG7A 4KM4A 1Y6VA 2W8DA 5KXAA 4CXUA 1ED9A 4GTWA 1AJDA 4TN0A 1ANJA 1KHKA 2XRGA 1AJCA 2W5WA 4LR9A 4LRCA 5DLTA 2RH6A 5LRMA 1KHNA 1EJJA 3ED4A 5INHA 4CYSA 4ZGAA 1HQAA 3SZYA 3SZZA 1E1ZP 4GTZA 1E33P 1SHQA 4ZG6A 4UOOA 2VQRA 1KH4A 3UN2A 4UORA 1AUKA 1ZEBA 4N7TA 5LRNA 1N2KA 1EQJA 3WAYA 3TWZA 1ELXA 4NWXA 4UOPA 5EGHA 3WAXA 4QAXA 4MIVA 4FDJA 3NKOA 3E2DA 5EGEA 2W5VA 4YR1A 1KH9A 4FDIA
chains in the Genus database with same CATH superfamily
1E2SP 3MK1A 4UPHA 3UN3A 5TJ3A 3TX0A 1KHJA 2ZKTA 4UPIA 1ELYA 2GSOA 1O98A 5GRRA 2IUCB 1O99A 3OT9A 3WBHA 5LQQA 1URBA 2W5TA 4B56A 5L0BA 2W5SA 1URAA 3BDGB 1ALIA 5DLWA 3WAVA 1EW2A 3BDHA 2G9YA 4KJGA 3M8ZA 1AJBA 3UO0A 3UNYA 3MK2A 4GTYA 1HDHA 2ANHA 3TG0A 2GLQA 3MK0A 3BDFA 1N2LA 3NKNA 4NWJA 3UN5A 5L0KA 2W5RA 1ZEFA 5LIAA 4LRFA 3M8YA 1SHNA 1AJAA 3CMRA 3NKMA 4MHXA 1EW9A 1ALHA 2W8SA 5IJSA 1B8JA 1EI6A 4LRBA 5K4PA 4CXSA 4MY4A 2GSNA 3IGZB 4LR2A 4LRAA 4CXKA 2IFYA 4UPKA 4ZG9A 1Y7AA 4KAVA 1P49A 1ALJA 2W5QA 1ELZA 3DYCA 2IUCA 1ED8A 4CYRA 4KAYA 3NKQA 5AJ9A 5DLVA 4GTXA 3BDGA 2W5XA 2X98A 1HJKA 2XR9A 3M7VA 2GSUA 4UPLA 2QZUA 1ZEDA 1KH5A 3B5QA 1KHLA 3A52A 5HRTA 3KD8A 3NKRA 4LR7A 4LQYA 5GOVA 3M8WA 3NKPA 3Q3QA 1EW8A 1KH7A 1ALKA 1K7HA 3IGYB 3T00A 4LRDA 2D1GA 3IDDA 5IJQA 3DPCA 4LR8A 3WAWA 1E3CP 3T01A 4KJDA 3LXQA 4LREA 3T02A 1ANIA 3NVLA 5L0EA 5C66A 2GA3A 1FSUA 4ZG7A 4KM4A 1Y6VA 2W8DA 5KXAA 4CXUA 1ED9A 4GTWA 1AJDA 4TN0A 1ANJA 1KHKA 2XRGA 1AJCA 2W5WA 4LR9A 4LRCA 5DLTA 2RH6A 5LRMA 1KHNA 1EJJA 3ED4A 5INHA 4CYSA 4ZGAA 1HQAA 3SZYA 3SZZA 1E1ZP 4GTZA 1E33P 1SHQA 4ZG6A 4UOOA 2VQRA 1KH4A 3UN2A 4UORA 1AUKA 1ZEBA 4N7TA 5LRNA 1N2KA 1EQJA 3WAYA 3TWZA 1ELXA 4NWXA 4UOPA 5EGHA 3WAXA 4QAXA 4MIVA 4FDJA 3NKOA 3E2DA 5EGEA 2W5VA 4YR1A 1KH9A 4FDIA
chains in the Genus database with same CATH topology
1E2SP 3MK1A 4UPHA 3UN3A 5TJ3A 3TX0A 1KHJA 2ZKTA 4UPIA 1ELYA 2GSOA 1O98A 5GRRA 2IUCB 1O99A 3OT9A 3WBHA 5LQQA 1URBA 2W5TA 4B56A 5L0BA 2W5SA 1URAA 3BDGB 1ALIA 5DLWA 3WAVA 1EW2A 3BDHA 2G9YA 4KJGA 3M8ZA 1AJBA 3UO0A 3UNYA 3MK2A 4GTYA 1HDHA 2ANHA 3TG0A 2GLQA 3MK0A 3BDFA 1N2LA 3NKNA 4NWJA 3UN5A 5L0KA 2W5RA 1ZEFA 5LIAA 4LRFA 3M8YA 1SHNA 1AJAA 3CMRA 3NKMA 4MHXA 1EW9A 1ALHA 2W8SA 5IJSA 1B8JA 1EI6A 4LRBA 5K4PA 4CXSA 4MY4A 2GSNA 3IGZB 4LR2A 4LRAA 4CXKA 2IFYA 4UPKA 4ZG9A 1Y7AA 4KAVA 1P49A 1ALJA 2W5QA 1ELZA 3DYCA 2IUCA 1ED8A 4CYRA 4KAYA 3NKQA 5AJ9A 5DLVA 4GTXA 3BDGA 2W5XA 2X98A 1HJKA 2XR9A 3M7VA 2GSUA 4UPLA 2QZUA 1ZEDA 1KH5A 3B5QA 1KHLA 3A52A 5HRTA 3KD8A 3NKRA 4LR7A 4LQYA 5GOVA 3M8WA 3NKPA 3Q3QA 1EW8A 1KH7A 1ALKA 1K7HA 3IGYB 3T00A 4LRDA 2D1GA 3IDDA 5IJQA 3DPCA 4LR8A 3WAWA 1E3CP 3T01A 4KJDA 3LXQA 4LREA 3T02A 1ANIA 3NVLA 5L0EA 5C66A 2GA3A 1FSUA 4ZG7A 4KM4A 1Y6VA 2W8DA 5KXAA 4CXUA 1ED9A 4GTWA 1AJDA 4TN0A 1ANJA 1KHKA 2XRGA 1AJCA 2W5WA 4LR9A 4LRCA 5DLTA 2RH6A 5LRMA 1KHNA 1EJJA 3ED4A 5INHA 4CYSA 4ZGAA 1HQAA 3SZYA 3SZZA 1E1ZP 4GTZA 1E33P 1SHQA 4ZG6A 4UOOA 2VQRA 1KH4A 3UN2A 4UORA 1AUKA 1ZEBA 4N7TA 5LRNA 1N2KA 1EQJA 3WAYA 3TWZA 1ELXA 4NWXA 4UOPA 5EGHA 3WAXA 4QAXA 4MIVA 4FDJA 3NKOA 3E2DA 5EGEA 2W5VA 4YR1A 1KH9A 4FDIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E2S P;  3MK1 A;  4UPH A;  3UN3 A;  5TJ3 A;  3TX0 A;  1KHJ A;  2ZKT A;  4UPI A;  1ELY A;  2GSO A;  1O98 A;  5GRR A;  2IUC B;  1O99 A;  3OT9 A;  3WBH A;  5LQQ A;  1URB A;  2W5T A;  4B56 A;  5L0B A;  2W5S A;  1URA A;  3BDG B;  1ALI A;  5DLW A;  3WAV A;  1EW2 A;  3BDH A;  2G9Y A;  4KJG A;  3M8Z A;  1AJB A;  3UO0 A;  3UNY A;  3MK2 A;  4GTY A;  1HDH A;  2ANH A;  3TG0 A;  2GLQ A;  3MK0 A;  3BDF A;  1N2L A;  3NKN A;  4NWJ A;  3UN5 A;  5L0K A;  2W5R A;  1ZEF A;  5LIA A;  4LRF A;  3M8Y A;  1SHN A;  1AJA A;  3CMR A;  3NKM A;  4MHX A;  1EW9 A;  1ALH A;  2W8S A;  5IJS A;  1B8J A;  1EI6 A;  4LRB A;  5K4P A;  4CXS A;  4MY4 A;  2GSN A;  3IGZ B;  4LR2 A;  4LRA A;  4CXK A;  2IFY A;  4UPK A;  4ZG9 A;  1Y7A A;  4KAV A;  1P49 A;  1ALJ A;  2W5Q A;  1ELZ A;  3DYC A;  2IUC A;  1ED8 A;  4CYR A;  4KAY A;  3NKQ A;  5AJ9 A;  5DLV A;  4GTX A;  3BDG A;  2W5X A;  2X98 A;  1HJK A;  2XR9 A;  3M7V A;  2GSU A;  4UPL A;  2QZU A;  1ZED A;  1KH5 A;  3B5Q A;  1KHL A;  3A52 A;  5HRT A;  3KD8 A;  3NKR A;  4LR7 A;  4LQY A;  5GOV A;  3M8W A;  3NKP A;  3Q3Q A;  1EW8 A;  1KH7 A;  1ALK A;  1K7H A;  3IGY B;  3T00 A;  4LRD A;  2D1G A;  3IDD A;  5IJQ A;  3DPC A;  4LR8 A;  3WAW A;  1E3C P;  3T01 A;  4KJD A;  3LXQ A;  4LRE A;  3T02 A;  1ANI A;  3NVL A;  5L0E A;  5C66 A;  2GA3 A;  1FSU A;  4ZG7 A;  4KM4 A;  1Y6V A;  2W8D A;  5KXA A;  4CXU A;  1ED9 A;  4GTW A;  1AJD A;  4TN0 A;  1ANJ A;  1KHK A;  2XRG A;  1AJC A;  2W5W A;  4LR9 A;  4LRC A;  5DLT A;  2RH6 A;  5LRM A;  1KHN A;  1EJJ A;  3ED4 A;  5INH A;  4CYS A;  4ZGA A;  1HQA A;  3SZY A;  3SZZ A;  1E1Z P;  4GTZ A;  1E33 P;  1SHQ A;  4ZG6 A;  4UOO A;  2VQR A;  1KH4 A;  3UN2 A;  4UOR A;  1AUK A;  1ZEB A;  4N7T A;  5LRN A;  1N2K A;  1EQJ A;  3WAY A;  3TWZ A;  1ELX A;  4NWX A;  4UOP A;  5EGH A;  3WAX A;  4QAX A;  4MIV A;  4FDJ A;  3NKO A;  3E2D A;  5EGE A;  2W5V A;  4YR1 A;  1KH9 A;  4FDI A; 
#chains in the Genus database with same CATH topology
 1E2S P;  3MK1 A;  4UPH A;  3UN3 A;  5TJ3 A;  3TX0 A;  1KHJ A;  2ZKT A;  4UPI A;  1ELY A;  2GSO A;  1O98 A;  5GRR A;  2IUC B;  1O99 A;  3OT9 A;  3WBH A;  5LQQ A;  1URB A;  2W5T A;  4B56 A;  5L0B A;  2W5S A;  1URA A;  3BDG B;  1ALI A;  5DLW A;  3WAV A;  1EW2 A;  3BDH A;  2G9Y A;  4KJG A;  3M8Z A;  1AJB A;  3UO0 A;  3UNY A;  3MK2 A;  4GTY A;  1HDH A;  2ANH A;  3TG0 A;  2GLQ A;  3MK0 A;  3BDF A;  1N2L A;  3NKN A;  4NWJ A;  3UN5 A;  5L0K A;  2W5R A;  1ZEF A;  5LIA A;  4LRF A;  3M8Y A;  1SHN A;  1AJA A;  3CMR A;  3NKM A;  4MHX A;  1EW9 A;  1ALH A;  2W8S A;  5IJS A;  1B8J A;  1EI6 A;  4LRB A;  5K4P A;  4CXS A;  4MY4 A;  2GSN A;  3IGZ B;  4LR2 A;  4LRA A;  4CXK A;  2IFY A;  4UPK A;  4ZG9 A;  1Y7A A;  4KAV A;  1P49 A;  1ALJ A;  2W5Q A;  1ELZ A;  3DYC A;  2IUC A;  1ED8 A;  4CYR A;  4KAY A;  3NKQ A;  5AJ9 A;  5DLV A;  4GTX A;  3BDG A;  2W5X A;  2X98 A;  1HJK A;  2XR9 A;  3M7V A;  2GSU A;  4UPL A;  2QZU A;  1ZED A;  1KH5 A;  3B5Q A;  1KHL A;  3A52 A;  5HRT A;  3KD8 A;  3NKR A;  4LR7 A;  4LQY A;  5GOV A;  3M8W A;  3NKP A;  3Q3Q A;  1EW8 A;  1KH7 A;  1ALK A;  1K7H A;  3IGY B;  3T00 A;  4LRD A;  2D1G A;  3IDD A;  5IJQ A;  3DPC A;  4LR8 A;  3WAW A;  1E3C P;  3T01 A;  4KJD A;  3LXQ A;  4LRE A;  3T02 A;  1ANI A;  3NVL A;  5L0E A;  5C66 A;  2GA3 A;  1FSU A;  4ZG7 A;  4KM4 A;  1Y6V A;  2W8D A;  5KXA A;  4CXU A;  1ED9 A;  4GTW A;  1AJD A;  4TN0 A;  1ANJ A;  1KHK A;  2XRG A;  1AJC A;  2W5W A;  4LR9 A;  4LRC A;  5DLT A;  2RH6 A;  5LRM A;  1KHN A;  1EJJ A;  3ED4 A;  5INH A;  4CYS A;  4ZGA A;  1HQA A;  3SZY A;  3SZZ A;  1E1Z P;  4GTZ A;  1E33 P;  1SHQ A;  4ZG6 A;  4UOO A;  2VQR A;  1KH4 A;  3UN2 A;  4UOR A;  1AUK A;  1ZEB A;  4N7T A;  5LRN A;  1N2K A;  1EQJ A;  3WAY A;  3TWZ A;  1ELX A;  4NWX A;  4UOP A;  5EGH A;  3WAX A;  4QAX A;  4MIV A;  4FDJ A;  3NKO A;  3E2D A;  5EGE A;  2W5V A;  4YR1 A;  1KH9 A;  4FDI A; 
#chains in the Genus database with same CATH homology
 1E2S P;  3MK1 A;  4UPH A;  3UN3 A;  5TJ3 A;  3TX0 A;  1KHJ A;  2ZKT A;  4UPI A;  1ELY A;  2GSO A;  1O98 A;  5GRR A;  2IUC B;  1O99 A;  3OT9 A;  3WBH A;  5LQQ A;  1URB A;  2W5T A;  4B56 A;  5L0B A;  2W5S A;  1URA A;  3BDG B;  1ALI A;  5DLW A;  3WAV A;  1EW2 A;  3BDH A;  2G9Y A;  4KJG A;  3M8Z A;  1AJB A;  3UO0 A;  3UNY A;  3MK2 A;  4GTY A;  1HDH A;  2ANH A;  3TG0 A;  2GLQ A;  3MK0 A;  3BDF A;  1N2L A;  3NKN A;  4NWJ A;  3UN5 A;  5L0K A;  2W5R A;  1ZEF A;  5LIA A;  4LRF A;  3M8Y A;  1SHN A;  1AJA A;  3CMR A;  3NKM A;  4MHX A;  1EW9 A;  1ALH A;  2W8S A;  5IJS A;  1B8J A;  1EI6 A;  4LRB A;  5K4P A;  4CXS A;  4MY4 A;  2GSN A;  3IGZ B;  4LR2 A;  4LRA A;  4CXK A;  2IFY A;  4UPK A;  4ZG9 A;  1Y7A A;  4KAV A;  1P49 A;  1ALJ A;  2W5Q A;  1ELZ A;  3DYC A;  2IUC A;  1ED8 A;  4CYR A;  4KAY A;  3NKQ A;  5AJ9 A;  5DLV A;  4GTX A;  3BDG A;  2W5X A;  2X98 A;  1HJK A;  2XR9 A;  3M7V A;  2GSU A;  4UPL A;  2QZU A;  1ZED A;  1KH5 A;  3B5Q A;  1KHL A;  3A52 A;  5HRT A;  3KD8 A;  3NKR A;  4LR7 A;  4LQY A;  5GOV A;  3M8W A;  3NKP A;  3Q3Q A;  1EW8 A;  1KH7 A;  1ALK A;  1K7H A;  3IGY B;  3T00 A;  4LRD A;  2D1G A;  3IDD A;  5IJQ A;  3DPC A;  4LR8 A;  3WAW A;  1E3C P;  3T01 A;  4KJD A;  3LXQ A;  4LRE A;  3T02 A;  1ANI A;  3NVL A;  5L0E A;  5C66 A;  2GA3 A;  1FSU A;  4ZG7 A;  4KM4 A;  1Y6V A;  2W8D A;  5KXA A;  4CXU A;  1ED9 A;  4GTW A;  1AJD A;  4TN0 A;  1ANJ A;  1KHK A;  2XRG A;  1AJC A;  2W5W A;  4LR9 A;  4LRC A;  5DLT A;  2RH6 A;  5LRM A;  1KHN A;  1EJJ A;  3ED4 A;  5INH A;  4CYS A;  4ZGA A;  1HQA A;  3SZY A;  3SZZ A;  1E1Z P;  4GTZ A;  1E33 P;  1SHQ A;  4ZG6 A;  4UOO A;  2VQR A;  1KH4 A;  3UN2 A;  4UOR A;  1AUK A;  1ZEB A;  4N7T A;  5LRN A;  1N2K A;  1EQJ A;  3WAY A;  3TWZ A;  1ELX A;  4NWX A;  4UOP A;  5EGH A;  3WAX A;  4QAX A;  4MIV A;  4FDJ A;  3NKO A;  3E2D A;  5EGE A;  2W5V A;  4YR1 A;  1KH9 A;  4FDI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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