1URBA

Alkaline phosphatase (n51mg)
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
446
structure length
446
Chain Sequence
b'MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGNGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Kinetic and structural consequences of replacing the aspartate bridge by asparagine in the catalytic metal triad of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
source organism Escherichia coli
molecule tags Alkaline phosphatase
total genus 163
structure length 446
sequence length 446
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1996-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1urbA00
1N2KA 1O99A 1EW9A 1ELZA 2W8SA 3BDGA 4LR2A 4NWXA 1EI6A 3E2DA 2W5VA 1SHQA 2W5RA 3B5QA 3WBHA 1E2SP 4LRAA 2W5QA 3A52A 3SZZA 1KH5A 1KH9A 2W5XA 4UOPA 2X98A 4LRDA 5GRRA 3ED4A 2GSOA 2W8DA 2XR9A 4LREA 4QAXA 3OT9A 4TN0A 4ZG9A 2W5TA 3NVLA 1Y7AA 4FDJA 1KHJA 3M8ZA 4ZG7A 1EJJA 2GSUA 4MIVA 1AJDA 4CXSA 1ED9A 2GSNA 4UPHA 4UOOA 1EW2A 5LIAA 5L0KA 1ELYA 3BDGB 1ALJA 1KH4A 3TWZA 3NKPA 1AJAA 3CMRA 1N2LA 5L0BA 4CYRA 4ZGAA 2XRGA 2GLQA 1ALHA 1ALKA 2IUCA 4UORA 3UN5A 1B8JA 4MY4A 3WAVA 5LQQA 3NKMA 5EGEA 1EQJA 4KJDA 1E33P 1HQAA 3UN3A 5KXAA 3TG0A 5AJ9A 3T02A 1URAA 4LR8A 1O98A 5DLWA 4LR7A 5DLTA 3IDDA 3MK2A 1ZEFA 4LRBA 4NWJA 1E3CP 3Q3QA 1HDHA 4LQYA 3TX0A 5TJ3A 3NKNA 1K7HA 4B56A 4CXKA 3DPCA 1ALIA 3UN2A 4YR1A 3MK0A 2IUCB 3IGYB 4UPKA 4KAYA 4LRFA 3T00A 1FSUA 5LRMA 1ZEDA 3KD8A 4GTYA 3NKRA 3M8YA 2RH6A 4GTZA 5IJSA 1KHKA 1ZEBA 2QZUA 2W5SA 3MK1A 2G9YA 1URBA 4KJGA 3IGZB 3UNYA 5GOVA 2IFYA 4MHXA 4UPIA 4GTWA 3SZYA 4CXUA 1AUKA 3WAXA 1Y6VA 2VQRA 2ZKTA 3M8WA 4UPLA 5DLVA 3LXQA 5L0EA 1KHLA 2D1GA 4ZG6A 3WAWA 1KH7A 5INHA 3T01A 1E1ZP 1KHNA 4KAVA 1HJKA 3NKOA 2ANHA 1ELXA 1P49A 3M7VA 5C66A 3DYCA 1ANJA 3NKQA 5HRTA 1SHNA 1ANIA 4N7TA 1AJCA 2W5WA 1EW8A 5K4PA 5LRNA 3UO0A 4LR9A 4KM4A 3WAYA 2GA3A 4FDIA 4LRCA 5EGHA 4GTXA 1ED8A 3BDHA 3BDFA 1AJBA 4CYSA 5IJQA
chains in the Genus database with same CATH superfamily
1N2KA 1O99A 1EW9A 1ELZA 2W8SA 3BDGA 4LR2A 4NWXA 1EI6A 3E2DA 2W5VA 1SHQA 2W5RA 3B5QA 3WBHA 1E2SP 4LRAA 2W5QA 3A52A 3SZZA 1KH5A 1KH9A 2W5XA 4UOPA 2X98A 4LRDA 5GRRA 3ED4A 2GSOA 2W8DA 2XR9A 4LREA 4QAXA 3OT9A 4TN0A 4ZG9A 2W5TA 3NVLA 1Y7AA 4FDJA 1KHJA 3M8ZA 4ZG7A 1EJJA 2GSUA 4MIVA 1AJDA 4CXSA 1ED9A 2GSNA 4UPHA 4UOOA 1EW2A 5LIAA 5L0KA 1ELYA 3BDGB 1ALJA 1KH4A 3TWZA 3NKPA 1AJAA 3CMRA 1N2LA 5L0BA 4CYRA 4ZGAA 2XRGA 2GLQA 1ALHA 1ALKA 2IUCA 4UORA 3UN5A 1B8JA 4MY4A 3WAVA 5LQQA 3NKMA 5EGEA 1EQJA 4KJDA 1E33P 1HQAA 3UN3A 5KXAA 3TG0A 5AJ9A 3T02A 1URAA 4LR8A 1O98A 5DLWA 4LR7A 5DLTA 3IDDA 3MK2A 1ZEFA 4LRBA 4NWJA 1E3CP 3Q3QA 1HDHA 4LQYA 3TX0A 5TJ3A 3NKNA 1K7HA 4B56A 4CXKA 3DPCA 1ALIA 3UN2A 4YR1A 3MK0A 2IUCB 3IGYB 4UPKA 4KAYA 4LRFA 3T00A 1FSUA 5LRMA 1ZEDA 3KD8A 4GTYA 3NKRA 3M8YA 2RH6A 4GTZA 5IJSA 1KHKA 1ZEBA 2QZUA 2W5SA 3MK1A 2G9YA 1URBA 4KJGA 3IGZB 3UNYA 5GOVA 2IFYA 4MHXA 4UPIA 4GTWA 3SZYA 4CXUA 1AUKA 3WAXA 1Y6VA 2VQRA 2ZKTA 3M8WA 4UPLA 5DLVA 3LXQA 5L0EA 1KHLA 2D1GA 4ZG6A 3WAWA 1KH7A 5INHA 3T01A 1E1ZP 1KHNA 4KAVA 1HJKA 3NKOA 2ANHA 1ELXA 1P49A 3M7VA 5C66A 3DYCA 1ANJA 3NKQA 5HRTA 1SHNA 1ANIA 4N7TA 1AJCA 2W5WA 1EW8A 5K4PA 5LRNA 3UO0A 4LR9A 4KM4A 3WAYA 2GA3A 4FDIA 4LRCA 5EGHA 4GTXA 1ED8A 3BDHA 3BDFA 1AJBA 4CYSA 5IJQA
chains in the Genus database with same CATH topology
1N2KA 1O99A 1EW9A 1ELZA 2W8SA 3BDGA 4LR2A 4NWXA 1EI6A 3E2DA 2W5VA 1SHQA 2W5RA 3B5QA 3WBHA 1E2SP 4LRAA 2W5QA 3A52A 3SZZA 1KH5A 1KH9A 2W5XA 4UOPA 2X98A 4LRDA 5GRRA 3ED4A 2GSOA 2W8DA 2XR9A 4LREA 4QAXA 3OT9A 4TN0A 4ZG9A 2W5TA 3NVLA 1Y7AA 4FDJA 1KHJA 3M8ZA 4ZG7A 1EJJA 2GSUA 4MIVA 1AJDA 4CXSA 1ED9A 2GSNA 4UPHA 4UOOA 1EW2A 5LIAA 5L0KA 1ELYA 3BDGB 1ALJA 1KH4A 3TWZA 3NKPA 1AJAA 3CMRA 1N2LA 5L0BA 4CYRA 4ZGAA 2XRGA 2GLQA 1ALHA 1ALKA 2IUCA 4UORA 3UN5A 1B8JA 4MY4A 3WAVA 5LQQA 3NKMA 5EGEA 1EQJA 4KJDA 1E33P 1HQAA 3UN3A 5KXAA 3TG0A 5AJ9A 3T02A 1URAA 4LR8A 1O98A 5DLWA 4LR7A 5DLTA 3IDDA 3MK2A 1ZEFA 4LRBA 4NWJA 1E3CP 3Q3QA 1HDHA 4LQYA 3TX0A 5TJ3A 3NKNA 1K7HA 4B56A 4CXKA 3DPCA 1ALIA 3UN2A 4YR1A 3MK0A 2IUCB 3IGYB 4UPKA 4KAYA 4LRFA 3T00A 1FSUA 5LRMA 1ZEDA 3KD8A 4GTYA 3NKRA 3M8YA 2RH6A 4GTZA 5IJSA 1KHKA 1ZEBA 2QZUA 2W5SA 3MK1A 2G9YA 1URBA 4KJGA 3IGZB 3UNYA 5GOVA 2IFYA 4MHXA 4UPIA 4GTWA 3SZYA 4CXUA 1AUKA 3WAXA 1Y6VA 2VQRA 2ZKTA 3M8WA 4UPLA 5DLVA 3LXQA 5L0EA 1KHLA 2D1GA 4ZG6A 3WAWA 1KH7A 5INHA 3T01A 1E1ZP 1KHNA 4KAVA 1HJKA 3NKOA 2ANHA 1ELXA 1P49A 3M7VA 5C66A 3DYCA 1ANJA 3NKQA 5HRTA 1SHNA 1ANIA 4N7TA 1AJCA 2W5WA 1EW8A 5K4PA 5LRNA 3UO0A 4LR9A 4KM4A 3WAYA 2GA3A 4FDIA 4LRCA 5EGHA 4GTXA 1ED8A 3BDHA 3BDFA 1AJBA 4CYSA 5IJQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N2K A;  1O99 A;  1EW9 A;  1ELZ A;  2W8S A;  3BDG A;  4LR2 A;  4NWX A;  1EI6 A;  3E2D A;  2W5V A;  1SHQ A;  2W5R A;  3B5Q A;  3WBH A;  1E2S P;  4LRA A;  2W5Q A;  3A52 A;  3SZZ A;  1KH5 A;  1KH9 A;  2W5X A;  4UOP A;  2X98 A;  4LRD A;  5GRR A;  3ED4 A;  2GSO A;  2W8D A;  2XR9 A;  4LRE A;  4QAX A;  3OT9 A;  4TN0 A;  4ZG9 A;  2W5T A;  3NVL A;  1Y7A A;  4FDJ A;  1KHJ A;  3M8Z A;  4ZG7 A;  1EJJ A;  2GSU A;  4MIV A;  1AJD A;  4CXS A;  1ED9 A;  2GSN A;  4UPH A;  4UOO A;  1EW2 A;  5LIA A;  5L0K A;  1ELY A;  3BDG B;  1ALJ A;  1KH4 A;  3TWZ A;  3NKP A;  1AJA A;  3CMR A;  1N2L A;  5L0B A;  4CYR A;  4ZGA A;  2XRG A;  2GLQ A;  1ALH A;  1ALK A;  2IUC A;  4UOR A;  3UN5 A;  1B8J A;  4MY4 A;  3WAV A;  5LQQ A;  3NKM A;  5EGE A;  1EQJ A;  4KJD A;  1E33 P;  1HQA A;  3UN3 A;  5KXA A;  3TG0 A;  5AJ9 A;  3T02 A;  1URA A;  4LR8 A;  1O98 A;  5DLW A;  4LR7 A;  5DLT A;  3IDD A;  3MK2 A;  1ZEF A;  4LRB A;  4NWJ A;  1E3C P;  3Q3Q A;  1HDH A;  4LQY A;  3TX0 A;  5TJ3 A;  3NKN A;  1K7H A;  4B56 A;  4CXK A;  3DPC A;  1ALI A;  3UN2 A;  4YR1 A;  3MK0 A;  2IUC B;  3IGY B;  4UPK A;  4KAY A;  4LRF A;  3T00 A;  1FSU A;  5LRM A;  1ZED A;  3KD8 A;  4GTY A;  3NKR A;  3M8Y A;  2RH6 A;  4GTZ A;  5IJS A;  1KHK A;  1ZEB A;  2QZU A;  2W5S A;  3MK1 A;  2G9Y A;  1URB A;  4KJG A;  3IGZ B;  3UNY A;  5GOV A;  2IFY A;  4MHX A;  4UPI A;  4GTW A;  3SZY A;  4CXU A;  1AUK A;  3WAX A;  1Y6V A;  2VQR A;  2ZKT A;  3M8W A;  4UPL A;  5DLV A;  3LXQ A;  5L0E A;  1KHL A;  2D1G A;  4ZG6 A;  3WAW A;  1KH7 A;  5INH A;  3T01 A;  1E1Z P;  1KHN A;  4KAV A;  1HJK A;  3NKO A;  2ANH A;  1ELX A;  1P49 A;  3M7V A;  5C66 A;  3DYC A;  1ANJ A;  3NKQ A;  5HRT A;  1SHN A;  1ANI A;  4N7T A;  1AJC A;  2W5W A;  1EW8 A;  5K4P A;  5LRN A;  3UO0 A;  4LR9 A;  4KM4 A;  3WAY A;  2GA3 A;  4FDI A;  4LRC A;  5EGH A;  4GTX A;  1ED8 A;  3BDH A;  3BDF A;  1AJB A;  4CYS A;  5IJQ A; 
#chains in the Genus database with same CATH topology
 1N2K A;  1O99 A;  1EW9 A;  1ELZ A;  2W8S A;  3BDG A;  4LR2 A;  4NWX A;  1EI6 A;  3E2D A;  2W5V A;  1SHQ A;  2W5R A;  3B5Q A;  3WBH A;  1E2S P;  4LRA A;  2W5Q A;  3A52 A;  3SZZ A;  1KH5 A;  1KH9 A;  2W5X A;  4UOP A;  2X98 A;  4LRD A;  5GRR A;  3ED4 A;  2GSO A;  2W8D A;  2XR9 A;  4LRE A;  4QAX A;  3OT9 A;  4TN0 A;  4ZG9 A;  2W5T A;  3NVL A;  1Y7A A;  4FDJ A;  1KHJ A;  3M8Z A;  4ZG7 A;  1EJJ A;  2GSU A;  4MIV A;  1AJD A;  4CXS A;  1ED9 A;  2GSN A;  4UPH A;  4UOO A;  1EW2 A;  5LIA A;  5L0K A;  1ELY A;  3BDG B;  1ALJ A;  1KH4 A;  3TWZ A;  3NKP A;  1AJA A;  3CMR A;  1N2L A;  5L0B A;  4CYR A;  4ZGA A;  2XRG A;  2GLQ A;  1ALH A;  1ALK A;  2IUC A;  4UOR A;  3UN5 A;  1B8J A;  4MY4 A;  3WAV A;  5LQQ A;  3NKM A;  5EGE A;  1EQJ A;  4KJD A;  1E33 P;  1HQA A;  3UN3 A;  5KXA A;  3TG0 A;  5AJ9 A;  3T02 A;  1URA A;  4LR8 A;  1O98 A;  5DLW A;  4LR7 A;  5DLT A;  3IDD A;  3MK2 A;  1ZEF A;  4LRB A;  4NWJ A;  1E3C P;  3Q3Q A;  1HDH A;  4LQY A;  3TX0 A;  5TJ3 A;  3NKN A;  1K7H A;  4B56 A;  4CXK A;  3DPC A;  1ALI A;  3UN2 A;  4YR1 A;  3MK0 A;  2IUC B;  3IGY B;  4UPK A;  4KAY A;  4LRF A;  3T00 A;  1FSU A;  5LRM A;  1ZED A;  3KD8 A;  4GTY A;  3NKR A;  3M8Y A;  2RH6 A;  4GTZ A;  5IJS A;  1KHK A;  1ZEB A;  2QZU A;  2W5S A;  3MK1 A;  2G9Y A;  1URB A;  4KJG A;  3IGZ B;  3UNY A;  5GOV A;  2IFY A;  4MHX A;  4UPI A;  4GTW A;  3SZY A;  4CXU A;  1AUK A;  3WAX A;  1Y6V A;  2VQR A;  2ZKT A;  3M8W A;  4UPL A;  5DLV A;  3LXQ A;  5L0E A;  1KHL A;  2D1G A;  4ZG6 A;  3WAW A;  1KH7 A;  5INH A;  3T01 A;  1E1Z P;  1KHN A;  4KAV A;  1HJK A;  3NKO A;  2ANH A;  1ELX A;  1P49 A;  3M7V A;  5C66 A;  3DYC A;  1ANJ A;  3NKQ A;  5HRT A;  1SHN A;  1ANI A;  4N7T A;  1AJC A;  2W5W A;  1EW8 A;  5K4P A;  5LRN A;  3UO0 A;  4LR9 A;  4KM4 A;  3WAY A;  2GA3 A;  4FDI A;  4LRC A;  5EGH A;  4GTX A;  1ED8 A;  3BDH A;  3BDF A;  1AJB A;  4CYS A;  5IJQ A; 
#chains in the Genus database with same CATH homology
 1N2K A;  1O99 A;  1EW9 A;  1ELZ A;  2W8S A;  3BDG A;  4LR2 A;  4NWX A;  1EI6 A;  3E2D A;  2W5V A;  1SHQ A;  2W5R A;  3B5Q A;  3WBH A;  1E2S P;  4LRA A;  2W5Q A;  3A52 A;  3SZZ A;  1KH5 A;  1KH9 A;  2W5X A;  4UOP A;  2X98 A;  4LRD A;  5GRR A;  3ED4 A;  2GSO A;  2W8D A;  2XR9 A;  4LRE A;  4QAX A;  3OT9 A;  4TN0 A;  4ZG9 A;  2W5T A;  3NVL A;  1Y7A A;  4FDJ A;  1KHJ A;  3M8Z A;  4ZG7 A;  1EJJ A;  2GSU A;  4MIV A;  1AJD A;  4CXS A;  1ED9 A;  2GSN A;  4UPH A;  4UOO A;  1EW2 A;  5LIA A;  5L0K A;  1ELY A;  3BDG B;  1ALJ A;  1KH4 A;  3TWZ A;  3NKP A;  1AJA A;  3CMR A;  1N2L A;  5L0B A;  4CYR A;  4ZGA A;  2XRG A;  2GLQ A;  1ALH A;  1ALK A;  2IUC A;  4UOR A;  3UN5 A;  1B8J A;  4MY4 A;  3WAV A;  5LQQ A;  3NKM A;  5EGE A;  1EQJ A;  4KJD A;  1E33 P;  1HQA A;  3UN3 A;  5KXA A;  3TG0 A;  5AJ9 A;  3T02 A;  1URA A;  4LR8 A;  1O98 A;  5DLW A;  4LR7 A;  5DLT A;  3IDD A;  3MK2 A;  1ZEF A;  4LRB A;  4NWJ A;  1E3C P;  3Q3Q A;  1HDH A;  4LQY A;  3TX0 A;  5TJ3 A;  3NKN A;  1K7H A;  4B56 A;  4CXK A;  3DPC A;  1ALI A;  3UN2 A;  4YR1 A;  3MK0 A;  2IUC B;  3IGY B;  4UPK A;  4KAY A;  4LRF A;  3T00 A;  1FSU A;  5LRM A;  1ZED A;  3KD8 A;  4GTY A;  3NKR A;  3M8Y A;  2RH6 A;  4GTZ A;  5IJS A;  1KHK A;  1ZEB A;  2QZU A;  2W5S A;  3MK1 A;  2G9Y A;  1URB A;  4KJG A;  3IGZ B;  3UNY A;  5GOV A;  2IFY A;  4MHX A;  4UPI A;  4GTW A;  3SZY A;  4CXU A;  1AUK A;  3WAX A;  1Y6V A;  2VQR A;  2ZKT A;  3M8W A;  4UPL A;  5DLV A;  3LXQ A;  5L0E A;  1KHL A;  2D1G A;  4ZG6 A;  3WAW A;  1KH7 A;  5INH A;  3T01 A;  1E1Z P;  1KHN A;  4KAV A;  1HJK A;  3NKO A;  2ANH A;  1ELX A;  1P49 A;  3M7V A;  5C66 A;  3DYC A;  1ANJ A;  3NKQ A;  5HRT A;  1SHN A;  1ANI A;  4N7T A;  1AJC A;  2W5W A;  1EW8 A;  5K4P A;  5LRN A;  3UO0 A;  4LR9 A;  4KM4 A;  3WAY A;  2GA3 A;  4FDI A;  4LRC A;  5EGH A;  4GTX A;  1ED8 A;  3BDH A;  3BDF A;  1AJB A;  4CYS A;  5IJQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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