1UUTA

The nuclease domain of adeno-associated virus rep complexed with the rbe' stemloop of the viral inverted terminal repeat
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
195
structure length
195
Chain Sequence
MATFYEVIVRVPFDVEEHLPGISDSFVDWVTGQIWELPPESDLNLTLVEQPQLTVADRIRRVFLYEWNKFSKQESKFFVQFEKGSEYFHLHTLVETSGISSMVLGRYVSQIRAQLVKVVFQGIEPQINDWVAITKVKKGGANKVVDSGYIPAYLLPKVQPELQWAWTNLDEYKLAALNLEERKRLVAQFLAESSQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords REP PROTEIN
publication title The Nuclease Domain of Adeno-Associated Virus Rep Coordinates Replication Initiation Using Two Distinct DNA Recognition Interfaces
pubmed doi rcsb
source organism Adeno-associated virus 5
total genus 65
structure length 195
sequence length 195
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-01-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08724 Rep_N Rep protein catalytic domain like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1310.20 Alpha Beta 3-Layer(aba) Sandwich Replication Protein E1; Chain: A, Replication Protein E1; Chain: A, 1uutA00
2IPRA 4FGNA 1RZ9A 5D9IA 2ITLA 1L2MA 1Z1DB 3QN2A 1TBDA 4LIFA 5DCXA 1M55A 2NTCA 4ZO0A 1UUTA 5CYNA 4ZQ9A 2ITJA 3QK2A 2NL8A 2HW0A 4GDFA 4LMDA 2IF9A 2FUFA 3QFQA 2TBDA 5BYGA 4FB3A 1L5IA 4NBPA
chains in the Genus database with same CATH superfamily
2IPRA 3DKXA 4FGNA 1RZ9A 5D9IA 2ITLA 1L2MA 1Z1DB 3QN2A 1TBDA 1F08A 4LIFA 4U87A 5DCXA 1M55A 2NTCA 4ZO0A 1UUTA 1R9WA 5CYNA 4ZQ9A 2ITJA 3QK2A 2NL8A 4KW3A 2HW0A 4GDFA 2IF9A 2FUFA 1KSXA 4NBPA 3QFQA 2TBDA 5BYGA 3DKYA 4FB3A 1L5IA 4LMDA 1KSYA
chains in the Genus database with same CATH topology
2IPRA 3DKXA 4FGNA 1RZ9A 5D9IA 2ITLA 1L2MA 1Z1DB 3QN2A 1TBDA 1F08A 4LIFA 4U87A 5DCXA 1M55A 2NTCA 4ZO0A 1UUTA 1R9WA 5CYNA 4ZQ9A 2ITJA 3QK2A 2NL8A 4KW3A 2HW0A 4GDFA 2IF9A 2FUFA 1KSXA 4NBPA 3QFQA 2TBDA 5BYGA 3DKYA 4FB3A 1L5IA 4LMDA 1KSYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IPR A;  4FGN A;  1RZ9 A;  5D9I A;  2ITL A;  1L2M A;  1Z1D B;  3QN2 A;  1TBD A;  4LIF A;  5DCX A;  1M55 A;  2NTC A;  4ZO0 A;  1UUT A;  5CYN A;  4ZQ9 A;  2ITJ A;  3QK2 A;  2NL8 A;  2HW0 A;  4GDF A;  4LMD A;  2IF9 A;  2FUF A;  3QFQ A;  2TBD A;  5BYG A;  4FB3 A;  1L5I A;  4NBP A; 
#chains in the Genus database with same CATH topology
 2IPR A;  3DKX A;  4FGN A;  1RZ9 A;  5D9I A;  2ITL A;  1L2M A;  1Z1D B;  3QN2 A;  1TBD A;  1F08 A;  4LIF A;  4U87 A;  5DCX A;  1M55 A;  2NTC A;  4ZO0 A;  1UUT A;  1R9W A;  5CYN A;  4ZQ9 A;  2ITJ A;  3QK2 A;  2NL8 A;  4KW3 A;  2HW0 A;  4GDF A;  2IF9 A;  2FUF A;  1KSX A;  4NBP A;  3QFQ A;  2TBD A;  5BYG A;  3DKY A;  4FB3 A;  1L5I A;  4LMD A;  1KSY A; 
#chains in the Genus database with same CATH homology
 2IPR A;  3DKX A;  4FGN A;  1RZ9 A;  5D9I A;  2ITL A;  1L2M A;  1Z1D B;  3QN2 A;  1TBD A;  1F08 A;  4LIF A;  4U87 A;  5DCX A;  1M55 A;  2NTC A;  4ZO0 A;  1UUT A;  1R9W A;  5CYN A;  4ZQ9 A;  2ITJ A;  3QK2 A;  2NL8 A;  4KW3 A;  2HW0 A;  4GDF A;  2IF9 A;  2FUF A;  1KSX A;  4NBP A;  3QFQ A;  2TBD A;  5BYG A;  3DKY A;  4FB3 A;  1L5I A;  4LMD A;  1KSY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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