1UUVA

Naphthalene 1,2-dioxygenase with nitric oxide and indole bound in the active site.
Total Genus 164
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title No Binding to Naphthalene Dioxygenase.
pubmed doi rcsb
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
molecule tags Oxidoreductase
source organism Pseudomonas putida
total genus 164
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2004-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1uuvA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1uuvA01
2QJYC 1WQLA 2JO6A 2BMOA 2NVEA 2YFIA 4NBAD 2XRXA 3CXHE 3GKEA 3GL0A 1SQXE 4NBBA 1UUWA 2NWFA 4QCKA 1SQVE 4P1CH 3FOUA 3GB4A 3GCEA 4HM8A 5KKZC 2HMKA 1Z01A 2DE6A 2BMQA 3L73E 1SQQE 3H1JE 3GTSA 1Z02A 1RIEA 2QJPC 2IBZE 4H0LD 4NBDD 2NUKA 3EQQA 3L72E 1O7WA 1VCKA 2DE7D 2NUMA 1PPJE 3EN1A 2CKFA 3H1HE 3VMHA 1L0NE 3DQYA 4NBFD 3N0QA 4H44D 1EZVE 1Z03A 1SJGA 4AAYB 5CXMA 1EG9A 4HM1A 3L75E 4QDCA 4NBEA 1G8JB 2B1XA 3VCAA 2E4PA 3GZXA 4QDFA 4NBCA 2DE5D 4NBGA 2XSOA 2GBWA 4NB9D 4NB8A 5AEWA 3GOBA 4PV1D 1O7NA 2ZT9D 3VCPA 4OGQD 4U3FE 2YIUC 3GL2A 1O7GA 2A06E 1KYOE 1KB9E 5AEUA 4HM0A 2HMLA 4HM3A 5KLIC 4P1BH 4NBBD 4NBHA 4NB8D 1NTZE 5HL4A 4HM7A 1G8KB 3GTEA 1SQPE 3VMGA 1SQBE 1WW9A 1FQTA 2DE6D 1ULIA 3C0DA 3CX5E 3VMIA 2E76D 1Q90C 3H1KE 3GZYA 3CWBE 3GKQA 2QJKC 4HM2A 1NU1E 4QDDA 2HMJA 1ZRTE 1BCCE 3H1IE 3VMHD 4QURA 2HMNA 4QUQA 1VM9A 4NBAA 5KLVE 4NBED 1RFSA 1PP9E 3AZCA 4QUPA 1VF5D 4NBCD 4QDFB 3D89A 2HMOA 2QPZA 4NBGD 1BE3E 3L71E 4HKVA 4H13D 2Q3WA 2E4QA 3L70E 4EMJB 2JZAA 1JM1A 2D2CD 3L74E 4HM6A 1NDOA 4HJLA 5BOKA 4NBDA 1O7PA 2XSHA 1O7HA 2YFLA 2DE7A 2YFJA 4NBHD 3H1LE 1NTKE 1NTME 4NBFA 2BCCE 2BMRA 2E74D 2ZYLA 2XR8A 2B24A 2E75D 2NVFA 3VMGD 1NYKA 2DE5A 4HM5A 3VMID 2YVJB 1O7MA 4NB9A 2FYNC 1L0LE 1UUVA 2HMMA 2NVGA 3TGUE 2GBXA 3BCCE 1P84E 4AIVA 4HM4A 2FYUE 3GCFA 2I7FA 4PD4E 1ULJA
chains in the Genus database with same CATH superfamily
2QJYC 1WQLA 2JO6A 2BMOA 2NVEA 2YFIA 4NBAD 2XRXA 3CXHE 3GKEA 3GL0A 1SQXE 4NBBA 1UUWA 2NWFA 4QCKA 1SQVE 4P1CH 3FOUA 3GB4A 3GCEA 4HM8A 5KKZC 2HMKA 1Z01A 2DE6A 2BMQA 3L73E 1SQQE 3H1JE 3GTSA 1Z02A 1RIEA 2QJPC 2IBZE 4H0LD 4NBDD 2NUKA 3EQQA 3L72E 1O7WA 1VCKA 2DE7D 2NUMA 1PPJE 3EN1A 2CKFA 3H1HE 3VMHA 1L0NE 3DQYA 4NBFD 3N0QA 4H44D 1EZVE 1Z03A 1SJGA 4AAYB 5CXMA 1EG9A 4HM1A 3L75E 4QDCA 4NBEA 1G8JB 2B1XA 3VCAA 2E4PA 3GZXA 4QDFA 4NBCA 2DE5D 4NBGA 2XSOA 2GBWA 4NB9D 4NB8A 5AEWA 3GOBA 4PV1D 1O7NA 2ZT9D 3VCPA 4OGQD 4U3FE 2YIUC 3GL2A 1O7GA 2A06E 1KYOE 1KB9E 5AEUA 4HM0A 2HMLA 4HM3A 5KLIC 4P1BH 4NBBD 4NBHA 4NB8D 1NTZE 5HL4A 4HM7A 1G8KB 3GTEA 1SQPE 3VMGA 1SQBE 1WW9A 1FQTA 2DE6D 1ULIA 3C0DA 3CX5E 3VMIA 2E76D 1Q90C 3H1KE 3GZYA 3CWBE 3GKQA 2QJKC 4HM2A 1NU1E 4QDDA 2HMJA 1ZRTE 1BCCE 3H1IE 3VMHD 4QURA 2HMNA 4QUQA 1VM9A 4NBAA 5KLVE 4NBED 1RFSA 1PP9E 3AZCA 4QUPA 1VF5D 4NBCD 4QDFB 3D89A 2HMOA 2QPZA 4NBGD 1BE3E 3L71E 4HKVA 4H13D 2Q3WA 2E4QA 3L70E 4EMJB 2JZAA 1JM1A 2D2CD 3L74E 4HM6A 1NDOA 4HJLA 5BOKA 4NBDA 1O7PA 2XSHA 1O7HA 2YFLA 2DE7A 2YFJA 4NBHD 3H1LE 1NTKE 1NTME 4NBFA 2BCCE 2BMRA 2E74D 2ZYLA 2XR8A 2B24A 2E75D 2NVFA 3VMGD 1NYKA 2DE5A 4HM5A 3VMID 2YVJB 1O7MA 4NB9A 2FYNC 1L0LE 1UUVA 2HMMA 2NVGA 3TGUE 2GBXA 3BCCE 1P84E 4AIVA 4HM4A 2FYUE 3GCFA 2I7FA 4PD4E 1ULJA
chains in the Genus database with same CATH topology
2QJYC 1WQLA 2JO6A 2BMOA 2NVEA 2YFIA 4NBAD 2XRXA 3CXHE 3GKEA 3GL0A 1SQXE 4NBBA 1UUWA 2NWFA 4QCKA 1SQVE 4P1CH 3FOUA 3GB4A 3GCEA 4HM8A 5KKZC 2HMKA 1Z01A 2DE6A 2BMQA 3L73E 1SQQE 3H1JE 3GTSA 1Z02A 1RIEA 2QJPC 2IBZE 4H0LD 4NBDD 2NUKA 3EQQA 3L72E 1O7WA 1VCKA 2DE7D 2NUMA 1PPJE 3EN1A 2CKFA 3H1HE 3VMHA 1L0NE 3DQYA 4NBFD 3N0QA 4H44D 1EZVE 1Z03A 1SJGA 4AAYB 5CXMA 1EG9A 4HM1A 3L75E 4QDCA 4NBEA 1G8JB 2B1XA 3VCAA 2E4PA 3GZXA 4QDFA 4NBCA 2DE5D 4NBGA 2XSOA 2GBWA 4NB9D 4NB8A 5AEWA 3GOBA 4PV1D 1O7NA 2ZT9D 3VCPA 4OGQD 4U3FE 2YIUC 3GL2A 1O7GA 2A06E 1KYOE 1KB9E 5AEUA 4HM0A 2HMLA 4HM3A 5KLIC 4P1BH 4NBBD 4NBHA 4NB8D 1NTZE 5HL4A 4HM7A 1G8KB 3GTEA 1SQPE 3VMGA 1SQBE 1WW9A 1FQTA 2DE6D 1ULIA 3C0DA 3CX5E 3VMIA 2E76D 1Q90C 3H1KE 3GZYA 3CWBE 3GKQA 2QJKC 4HM2A 1NU1E 4QDDA 2HMJA 1ZRTE 1BCCE 3H1IE 3VMHD 4QURA 2HMNA 4QUQA 1VM9A 4NBAA 5KLVE 4NBED 1RFSA 1PP9E 3AZCA 4QUPA 1VF5D 4NBCD 4QDFB 3D89A 2HMOA 2QPZA 4NBGD 1BE3E 3L71E 4HKVA 4H13D 2Q3WA 2E4QA 3L70E 4EMJB 2JZAA 1JM1A 2D2CD 3L74E 4HM6A 1NDOA 4HJLA 5BOKA 4NBDA 1O7PA 2XSHA 1O7HA 2YFLA 2DE7A 2YFJA 4NBHD 3H1LE 1NTKE 1NTME 4NBFA 2BCCE 2BMRA 2E74D 2ZYLA 2XR8A 2B24A 2E75D 2NVFA 3VMGD 1NYKA 2DE5A 4HM5A 3VMID 2YVJB 1O7MA 4NB9A 2FYNC 1L0LE 1UUVA 2HMMA 2NVGA 3TGUE 2GBXA 3BCCE 1P84E 4AIVA 4HM4A 2FYUE 3GCFA 2I7FA 4PD4E 1ULJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJY C;  1WQL A;  2JO6 A;  2BMO A;  2NVE A;  2YFI A;  4NBA D;  2XRX A;  3CXH E;  3GKE A;  3GL0 A;  1SQX E;  4NBB A;  1UUW A;  2NWF A;  4QCK A;  1SQV E;  4P1C H;  3FOU A;  3GB4 A;  3GCE A;  4HM8 A;  5KKZ C;  2HMK A;  1Z01 A;  2DE6 A;  2BMQ A;  3L73 E;  1SQQ E;  3H1J E;  3GTS A;  1Z02 A;  1RIE A;  2QJP C;  2IBZ E;  4H0L D;  4NBD D;  2NUK A;  3EQQ A;  3L72 E;  1O7W A;  1VCK A;  2DE7 D;  2NUM A;  1PPJ E;  3EN1 A;  2CKF A;  3H1H E;  3VMH A;  1L0N E;  3DQY A;  4NBF D;  3N0Q A;  4H44 D;  1EZV E;  1Z03 A;  1SJG A;  4AAY B;  5CXM A;  1EG9 A;  4HM1 A;  3L75 E;  4QDC A;  4NBE A;  1G8J B;  2B1X A;  3VCA A;  2E4P A;  3GZX A;  4QDF A;  4NBC A;  2DE5 D;  4NBG A;  2XSO A;  2GBW A;  4NB9 D;  4NB8 A;  5AEW A;  3GOB A;  4PV1 D;  1O7N A;  2ZT9 D;  3VCP A;  4OGQ D;  4U3F E;  2YIU C;  3GL2 A;  1O7G A;  2A06 E;  1KYO E;  1KB9 E;  5AEU A;  4HM0 A;  2HML A;  4HM3 A;  5KLI C;  4P1B H;  4NBB D;  4NBH A;  4NB8 D;  1NTZ E;  5HL4 A;  4HM7 A;  1G8K B;  3GTE A;  1SQP E;  3VMG A;  1SQB E;  1WW9 A;  1FQT A;  2DE6 D;  1ULI A;  3C0D A;  3CX5 E;  3VMI A;  2E76 D;  1Q90 C;  3H1K E;  3GZY A;  3CWB E;  3GKQ A;  2QJK C;  4HM2 A;  1NU1 E;  4QDD A;  2HMJ A;  1ZRT E;  1BCC E;  3H1I E;  3VMH D;  4QUR A;  2HMN A;  4QUQ A;  1VM9 A;  4NBA A;  5KLV E;  4NBE D;  1RFS A;  1PP9 E;  3AZC A;  4QUP A;  1VF5 D;  4NBC D;  4QDF B;  3D89 A;  2HMO A;  2QPZ A;  4NBG D;  1BE3 E;  3L71 E;  4HKV A;  4H13 D;  2Q3W A;  2E4Q A;  3L70 E;  4EMJ B;  2JZA A;  1JM1 A;  2D2C D;  3L74 E;  4HM6 A;  1NDO A;  4HJL A;  5BOK A;  4NBD A;  1O7P A;  2XSH A;  1O7H A;  2YFL A;  2DE7 A;  2YFJ A;  4NBH D;  3H1L E;  1NTK E;  1NTM E;  4NBF A;  2BCC E;  2BMR A;  2E74 D;  2ZYL A;  2XR8 A;  2B24 A;  2E75 D;  2NVF A;  3VMG D;  1NYK A;  2DE5 A;  4HM5 A;  3VMI D;  2YVJ B;  1O7M A;  4NB9 A;  2FYN C;  1L0L E;  1UUV A;  2HMM A;  2NVG A;  3TGU E;  2GBX A;  3BCC E;  1P84 E;  4AIV A;  4HM4 A;  2FYU E;  3GCF A;  2I7F A;  4PD4 E;  1ULJ A; 
#chains in the Genus database with same CATH topology
 2QJY C;  1WQL A;  2JO6 A;  2BMO A;  2NVE A;  2YFI A;  4NBA D;  2XRX A;  3CXH E;  3GKE A;  3GL0 A;  1SQX E;  4NBB A;  1UUW A;  2NWF A;  4QCK A;  1SQV E;  4P1C H;  3FOU A;  3GB4 A;  3GCE A;  4HM8 A;  5KKZ C;  2HMK A;  1Z01 A;  2DE6 A;  2BMQ A;  3L73 E;  1SQQ E;  3H1J E;  3GTS A;  1Z02 A;  1RIE A;  2QJP C;  2IBZ E;  4H0L D;  4NBD D;  2NUK A;  3EQQ A;  3L72 E;  1O7W A;  1VCK A;  2DE7 D;  2NUM A;  1PPJ E;  3EN1 A;  2CKF A;  3H1H E;  3VMH A;  1L0N E;  3DQY A;  4NBF D;  3N0Q A;  4H44 D;  1EZV E;  1Z03 A;  1SJG A;  4AAY B;  5CXM A;  1EG9 A;  4HM1 A;  3L75 E;  4QDC A;  4NBE A;  1G8J B;  2B1X A;  3VCA A;  2E4P A;  3GZX A;  4QDF A;  4NBC A;  2DE5 D;  4NBG A;  2XSO A;  2GBW A;  4NB9 D;  4NB8 A;  5AEW A;  3GOB A;  4PV1 D;  1O7N A;  2ZT9 D;  3VCP A;  4OGQ D;  4U3F E;  2YIU C;  3GL2 A;  1O7G A;  2A06 E;  1KYO E;  1KB9 E;  5AEU A;  4HM0 A;  2HML A;  4HM3 A;  5KLI C;  4P1B H;  4NBB D;  4NBH A;  4NB8 D;  1NTZ E;  5HL4 A;  4HM7 A;  1G8K B;  3GTE A;  1SQP E;  3VMG A;  1SQB E;  1WW9 A;  1FQT A;  2DE6 D;  1ULI A;  3C0D A;  3CX5 E;  3VMI A;  2E76 D;  1Q90 C;  3H1K E;  3GZY A;  3CWB E;  3GKQ A;  2QJK C;  4HM2 A;  1NU1 E;  4QDD A;  2HMJ A;  1ZRT E;  1BCC E;  3H1I E;  3VMH D;  4QUR A;  2HMN A;  4QUQ A;  1VM9 A;  4NBA A;  5KLV E;  4NBE D;  1RFS A;  1PP9 E;  3AZC A;  4QUP A;  1VF5 D;  4NBC D;  4QDF B;  3D89 A;  2HMO A;  2QPZ A;  4NBG D;  1BE3 E;  3L71 E;  4HKV A;  4H13 D;  2Q3W A;  2E4Q A;  3L70 E;  4EMJ B;  2JZA A;  1JM1 A;  2D2C D;  3L74 E;  4HM6 A;  1NDO A;  4HJL A;  5BOK A;  4NBD A;  1O7P A;  2XSH A;  1O7H A;  2YFL A;  2DE7 A;  2YFJ A;  4NBH D;  3H1L E;  1NTK E;  1NTM E;  4NBF A;  2BCC E;  2BMR A;  2E74 D;  2ZYL A;  2XR8 A;  2B24 A;  2E75 D;  2NVF A;  3VMG D;  1NYK A;  2DE5 A;  4HM5 A;  3VMI D;  2YVJ B;  1O7M A;  4NB9 A;  2FYN C;  1L0L E;  1UUV A;  2HMM A;  2NVG A;  3TGU E;  2GBX A;  3BCC E;  1P84 E;  4AIV A;  4HM4 A;  2FYU E;  3GCF A;  2I7F A;  4PD4 E;  1ULJ A; 
#chains in the Genus database with same CATH homology
 2QJY C;  1WQL A;  2JO6 A;  2BMO A;  2NVE A;  2YFI A;  4NBA D;  2XRX A;  3CXH E;  3GKE A;  3GL0 A;  1SQX E;  4NBB A;  1UUW A;  2NWF A;  4QCK A;  1SQV E;  4P1C H;  3FOU A;  3GB4 A;  3GCE A;  4HM8 A;  5KKZ C;  2HMK A;  1Z01 A;  2DE6 A;  2BMQ A;  3L73 E;  1SQQ E;  3H1J E;  3GTS A;  1Z02 A;  1RIE A;  2QJP C;  2IBZ E;  4H0L D;  4NBD D;  2NUK A;  3EQQ A;  3L72 E;  1O7W A;  1VCK A;  2DE7 D;  2NUM A;  1PPJ E;  3EN1 A;  2CKF A;  3H1H E;  3VMH A;  1L0N E;  3DQY A;  4NBF D;  3N0Q A;  4H44 D;  1EZV E;  1Z03 A;  1SJG A;  4AAY B;  5CXM A;  1EG9 A;  4HM1 A;  3L75 E;  4QDC A;  4NBE A;  1G8J B;  2B1X A;  3VCA A;  2E4P A;  3GZX A;  4QDF A;  4NBC A;  2DE5 D;  4NBG A;  2XSO A;  2GBW A;  4NB9 D;  4NB8 A;  5AEW A;  3GOB A;  4PV1 D;  1O7N A;  2ZT9 D;  3VCP A;  4OGQ D;  4U3F E;  2YIU C;  3GL2 A;  1O7G A;  2A06 E;  1KYO E;  1KB9 E;  5AEU A;  4HM0 A;  2HML A;  4HM3 A;  5KLI C;  4P1B H;  4NBB D;  4NBH A;  4NB8 D;  1NTZ E;  5HL4 A;  4HM7 A;  1G8K B;  3GTE A;  1SQP E;  3VMG A;  1SQB E;  1WW9 A;  1FQT A;  2DE6 D;  1ULI A;  3C0D A;  3CX5 E;  3VMI A;  2E76 D;  1Q90 C;  3H1K E;  3GZY A;  3CWB E;  3GKQ A;  2QJK C;  4HM2 A;  1NU1 E;  4QDD A;  2HMJ A;  1ZRT E;  1BCC E;  3H1I E;  3VMH D;  4QUR A;  2HMN A;  4QUQ A;  1VM9 A;  4NBA A;  5KLV E;  4NBE D;  1RFS A;  1PP9 E;  3AZC A;  4QUP A;  1VF5 D;  4NBC D;  4QDF B;  3D89 A;  2HMO A;  2QPZ A;  4NBG D;  1BE3 E;  3L71 E;  4HKV A;  4H13 D;  2Q3W A;  2E4Q A;  3L70 E;  4EMJ B;  2JZA A;  1JM1 A;  2D2C D;  3L74 E;  4HM6 A;  1NDO A;  4HJL A;  5BOK A;  4NBD A;  1O7P A;  2XSH A;  1O7H A;  2YFL A;  2DE7 A;  2YFJ A;  4NBH D;  3H1L E;  1NTK E;  1NTM E;  4NBF A;  2BCC E;  2BMR A;  2E74 D;  2ZYL A;  2XR8 A;  2B24 A;  2E75 D;  2NVF A;  3VMG D;  1NYK A;  2DE5 A;  4HM5 A;  3VMI D;  2YVJ B;  1O7M A;  4NB9 A;  2FYN C;  1L0L E;  1UUV A;  2HMM A;  2NVG A;  3TGU E;  2GBX A;  3BCC E;  1P84 E;  4AIV A;  4HM4 A;  2FYU E;  3GCF A;  2I7F A;  4PD4 E;  1ULJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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