1UUVA

Naphthalene 1,2-dioxygenase with nitric oxide and indole bound in the active site.
Total Genus 164
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title No Binding to Naphthalene Dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 164
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2004-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1uuvA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1uuvA01
2NVFA 4QDFB 5KKZC 3C0DA 1O7NA 1VCKA 3L71E 4U3FE 2IBZE 1L0NE 3N0QA 4NBGA 1Z01A 2DE7D 3GCFA 1FQTA 2E76D 2QJPC 3L70E 1UUVA 1RFSA 4HM3A 1SQXE 1O7GA 4NBCA 4HM2A 1L0LE 3L72E 1NU1E 2HMLA 4NBFA 4NBAA 3VMHD 2HMJA 4P1CH 1SQPE 1ZRTE 1KYOE 1BCCE 4HM7A 4QCKA 1O7PA 2E75D 1VF5D 1P84E 2DE6A 2E74D 1NTZE 2NUKA 5CXMA 2DE5A 2ZYLA 2NVGA 3D89A 2XSHA 5BOKA 4NBDA 4NB8A 2QPZA 4AIVA 1ULJA 1SQQE 2NWFA 1KB9E 4EMJB 2NUMA 4QDCA 4NBEA 2BMRA 4HJLA 4NBCD 1NDOA 3VMGD 4QUQA 2B1XA 1Z02A 2YFIA 4NBFD 4NBAD 2JZAA 3GB4A 3VMIA 2BMQA 2CKFA 3GKEA 2FYNC 4P1BH 2BMOA 4PV1D 3BCCE 4HM8A 2JO6A 3GCEA 1Z03A 1SQVE 4NB9A 5AEUA 2DE5D 3L75E 1WQLA 4HM0A 1JM1A 4QURA 5KLIC 2DE7A 2E4PA 2YFJA 1G8KB 3L74E 2Q3WA 2QJKC 2A06E 4HKVA 4AAYB 4HM5A 3TGUE 3FOUA 3VCPA 1EG9A 3GOBA 3GZXA 3L73E 2E4QA 4NBGD 4NBDD 2YFLA 4NB8D 3GL0A 2BCCE 4NBBA 4H44D 1O7MA 1EZVE 3VMHA 4H13D 1SQBE 1Q90C 4NBED 5HL4A 3H1IE 2FYUE 3DQYA 1PP9E 3H1JE 1NTME 2HMKA 3GTEA 4NBHA 2GBWA 3GTSA 3GZYA 3H1LE 2ZT9D 2I7FA 3AZCA 3EQQA 3GL2A 3GKQA 4HM1A 3VMID 3CWBE 2D2CD 1ULIA 4QUPA 4QDDA 3H1KE 4OGQD 2XRXA 5AEWA 3CX5E 1G8JB 3CXHE 2YVJB 2QJYC 2DE6D 2HMOA 3EN1A 3VCAA 1BE3E 4NB9D 2XR8A 2HMMA 4HM6A 1RIEA 2XSOA 2YIUC 1PPJE 3VMGA 2GBXA 3H1HE 1VM9A 4HM4A 4NBBD 1O7HA 1NYKA 2NVEA 2B24A 4QDFA 1UUWA 5KLVE 1WW9A 1SJGA 4PD4E 2HMNA 1NTKE 1O7WA 4NBHD 4H0LD
chains in the Genus database with same CATH superfamily
2NVFA 4QDFB 5KKZC 3C0DA 1O7NA 1VCKA 3L71E 4U3FE 2IBZE 1L0NE 3N0QA 4NBGA 1Z01A 2DE7D 3GCFA 1FQTA 2E76D 2QJPC 3L70E 1UUVA 1RFSA 4HM3A 1SQXE 1O7GA 4NBCA 4HM2A 1L0LE 3L72E 1NU1E 2HMLA 4NBFA 4NBAA 3VMHD 2HMJA 4P1CH 1SQPE 1ZRTE 1KYOE 1BCCE 4HM7A 4QCKA 1O7PA 2E75D 1VF5D 1P84E 2DE6A 2E74D 1NTZE 2NUKA 5CXMA 2DE5A 2ZYLA 2NVGA 3D89A 2XSHA 5BOKA 4NBDA 4NB8A 2QPZA 4AIVA 1ULJA 1SQQE 2NWFA 1KB9E 4EMJB 2NUMA 4QDCA 4NBEA 2BMRA 4HJLA 4NBCD 1NDOA 3VMGD 4QUQA 2B1XA 1Z02A 2YFIA 4NBFD 4NBAD 2JZAA 3GB4A 3VMIA 2BMQA 2CKFA 3GKEA 2FYNC 4P1BH 2BMOA 4PV1D 3BCCE 4HM8A 2JO6A 3GCEA 1Z03A 1SQVE 4NB9A 5AEUA 2DE5D 3L75E 1WQLA 4HM0A 1JM1A 4QURA 5KLIC 2DE7A 2E4PA 2YFJA 1G8KB 3L74E 2Q3WA 2QJKC 2A06E 4HKVA 4AAYB 4HM5A 3TGUE 3FOUA 3VCPA 1EG9A 3GOBA 3GZXA 3L73E 2E4QA 4NBGD 4NBDD 2YFLA 4NB8D 3GL0A 2BCCE 4NBBA 4H44D 1O7MA 1EZVE 3VMHA 4H13D 1SQBE 1Q90C 4NBED 5HL4A 3H1IE 2FYUE 3DQYA 1PP9E 3H1JE 1NTME 2HMKA 3GTEA 4NBHA 2GBWA 3GTSA 3GZYA 3H1LE 2ZT9D 2I7FA 3AZCA 3EQQA 3GL2A 3GKQA 4HM1A 3VMID 3CWBE 2D2CD 1ULIA 4QUPA 4QDDA 3H1KE 4OGQD 2XRXA 5AEWA 3CX5E 1G8JB 3CXHE 2YVJB 2QJYC 2DE6D 2HMOA 3EN1A 3VCAA 1BE3E 4NB9D 2XR8A 2HMMA 4HM6A 1RIEA 2XSOA 2YIUC 1PPJE 3VMGA 2GBXA 3H1HE 1VM9A 4HM4A 4NBBD 1O7HA 1NYKA 2NVEA 2B24A 4QDFA 1UUWA 5KLVE 1WW9A 1SJGA 4PD4E 2HMNA 1NTKE 1O7WA 4NBHD 4H0LD
chains in the Genus database with same CATH topology
2NVFA 4QDFB 5KKZC 3C0DA 1O7NA 1VCKA 3L71E 4U3FE 2IBZE 1L0NE 3N0QA 4NBGA 1Z01A 2DE7D 3GCFA 1FQTA 2E76D 2QJPC 3L70E 1UUVA 1RFSA 4HM3A 1SQXE 1O7GA 4NBCA 4HM2A 1L0LE 3L72E 1NU1E 2HMLA 4NBFA 4NBAA 3VMHD 2HMJA 4P1CH 1SQPE 1ZRTE 1KYOE 1BCCE 4HM7A 4QCKA 1O7PA 2E75D 1VF5D 1P84E 2DE6A 2E74D 1NTZE 2NUKA 5CXMA 2DE5A 2ZYLA 2NVGA 3D89A 2XSHA 5BOKA 4NBDA 4NB8A 2QPZA 4AIVA 1ULJA 1SQQE 2NWFA 1KB9E 4EMJB 2NUMA 4QDCA 4NBEA 2BMRA 4HJLA 4NBCD 1NDOA 3VMGD 4QUQA 2B1XA 1Z02A 2YFIA 4NBFD 4NBAD 2JZAA 3GB4A 3VMIA 2BMQA 2CKFA 3GKEA 2FYNC 4P1BH 2BMOA 4PV1D 3BCCE 4HM8A 2JO6A 3GCEA 1Z03A 1SQVE 4NB9A 5AEUA 2DE5D 3L75E 1WQLA 4HM0A 1JM1A 4QURA 5KLIC 2DE7A 2E4PA 2YFJA 1G8KB 3L74E 2Q3WA 2QJKC 2A06E 4HKVA 4AAYB 4HM5A 3TGUE 3FOUA 3VCPA 1EG9A 3GOBA 3GZXA 3L73E 2E4QA 4NBGD 4NBDD 2YFLA 4NB8D 3GL0A 2BCCE 4NBBA 4H44D 1O7MA 1EZVE 3VMHA 4H13D 1SQBE 1Q90C 4NBED 5HL4A 3H1IE 2FYUE 3DQYA 1PP9E 3H1JE 1NTME 2HMKA 3GTEA 4NBHA 2GBWA 3GTSA 3GZYA 3H1LE 2ZT9D 2I7FA 3AZCA 3EQQA 3GL2A 3GKQA 4HM1A 3VMID 3CWBE 2D2CD 1ULIA 4QUPA 4QDDA 3H1KE 4OGQD 2XRXA 5AEWA 3CX5E 1G8JB 3CXHE 2YVJB 2QJYC 2DE6D 2HMOA 3EN1A 3VCAA 1BE3E 4NB9D 2XR8A 2HMMA 4HM6A 1RIEA 2XSOA 2YIUC 1PPJE 3VMGA 2GBXA 3H1HE 1VM9A 4HM4A 4NBBD 1O7HA 1NYKA 2NVEA 2B24A 4QDFA 1UUWA 5KLVE 1WW9A 1SJGA 4PD4E 2HMNA 1NTKE 1O7WA 4NBHD 4H0LD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NVF A;  4QDF B;  5KKZ C;  3C0D A;  1O7N A;  1VCK A;  3L71 E;  4U3F E;  2IBZ E;  1L0N E;  3N0Q A;  4NBG A;  1Z01 A;  2DE7 D;  3GCF A;  1FQT A;  2E76 D;  2QJP C;  3L70 E;  1UUV A;  1RFS A;  4HM3 A;  1SQX E;  1O7G A;  4NBC A;  4HM2 A;  1L0L E;  3L72 E;  1NU1 E;  2HML A;  4NBF A;  4NBA A;  3VMH D;  2HMJ A;  4P1C H;  1SQP E;  1ZRT E;  1KYO E;  1BCC E;  4HM7 A;  4QCK A;  1O7P A;  2E75 D;  1VF5 D;  1P84 E;  2DE6 A;  2E74 D;  1NTZ E;  2NUK A;  5CXM A;  2DE5 A;  2ZYL A;  2NVG A;  3D89 A;  2XSH A;  5BOK A;  4NBD A;  4NB8 A;  2QPZ A;  4AIV A;  1ULJ A;  1SQQ E;  2NWF A;  1KB9 E;  4EMJ B;  2NUM A;  4QDC A;  4NBE A;  2BMR A;  4HJL A;  4NBC D;  1NDO A;  3VMG D;  4QUQ A;  2B1X A;  1Z02 A;  2YFI A;  4NBF D;  4NBA D;  2JZA A;  3GB4 A;  3VMI A;  2BMQ A;  2CKF A;  3GKE A;  2FYN C;  4P1B H;  2BMO A;  4PV1 D;  3BCC E;  4HM8 A;  2JO6 A;  3GCE A;  1Z03 A;  1SQV E;  4NB9 A;  5AEU A;  2DE5 D;  3L75 E;  1WQL A;  4HM0 A;  1JM1 A;  4QUR A;  5KLI C;  2DE7 A;  2E4P A;  2YFJ A;  1G8K B;  3L74 E;  2Q3W A;  2QJK C;  2A06 E;  4HKV A;  4AAY B;  4HM5 A;  3TGU E;  3FOU A;  3VCP A;  1EG9 A;  3GOB A;  3GZX A;  3L73 E;  2E4Q A;  4NBG D;  4NBD D;  2YFL A;  4NB8 D;  3GL0 A;  2BCC E;  4NBB A;  4H44 D;  1O7M A;  1EZV E;  3VMH A;  4H13 D;  1SQB E;  1Q90 C;  4NBE D;  5HL4 A;  3H1I E;  2FYU E;  3DQY A;  1PP9 E;  3H1J E;  1NTM E;  2HMK A;  3GTE A;  4NBH A;  2GBW A;  3GTS A;  3GZY A;  3H1L E;  2ZT9 D;  2I7F A;  3AZC A;  3EQQ A;  3GL2 A;  3GKQ A;  4HM1 A;  3VMI D;  3CWB E;  2D2C D;  1ULI A;  4QUP A;  4QDD A;  3H1K E;  4OGQ D;  2XRX A;  5AEW A;  3CX5 E;  1G8J B;  3CXH E;  2YVJ B;  2QJY C;  2DE6 D;  2HMO A;  3EN1 A;  3VCA A;  1BE3 E;  4NB9 D;  2XR8 A;  2HMM A;  4HM6 A;  1RIE A;  2XSO A;  2YIU C;  1PPJ E;  3VMG A;  2GBX A;  3H1H E;  1VM9 A;  4HM4 A;  4NBB D;  1O7H A;  1NYK A;  2NVE A;  2B24 A;  4QDF A;  1UUW A;  5KLV E;  1WW9 A;  1SJG A;  4PD4 E;  2HMN A;  1NTK E;  1O7W A;  4NBH D;  4H0L D; 
#chains in the Genus database with same CATH topology
 2NVF A;  4QDF B;  5KKZ C;  3C0D A;  1O7N A;  1VCK A;  3L71 E;  4U3F E;  2IBZ E;  1L0N E;  3N0Q A;  4NBG A;  1Z01 A;  2DE7 D;  3GCF A;  1FQT A;  2E76 D;  2QJP C;  3L70 E;  1UUV A;  1RFS A;  4HM3 A;  1SQX E;  1O7G A;  4NBC A;  4HM2 A;  1L0L E;  3L72 E;  1NU1 E;  2HML A;  4NBF A;  4NBA A;  3VMH D;  2HMJ A;  4P1C H;  1SQP E;  1ZRT E;  1KYO E;  1BCC E;  4HM7 A;  4QCK A;  1O7P A;  2E75 D;  1VF5 D;  1P84 E;  2DE6 A;  2E74 D;  1NTZ E;  2NUK A;  5CXM A;  2DE5 A;  2ZYL A;  2NVG A;  3D89 A;  2XSH A;  5BOK A;  4NBD A;  4NB8 A;  2QPZ A;  4AIV A;  1ULJ A;  1SQQ E;  2NWF A;  1KB9 E;  4EMJ B;  2NUM A;  4QDC A;  4NBE A;  2BMR A;  4HJL A;  4NBC D;  1NDO A;  3VMG D;  4QUQ A;  2B1X A;  1Z02 A;  2YFI A;  4NBF D;  4NBA D;  2JZA A;  3GB4 A;  3VMI A;  2BMQ A;  2CKF A;  3GKE A;  2FYN C;  4P1B H;  2BMO A;  4PV1 D;  3BCC E;  4HM8 A;  2JO6 A;  3GCE A;  1Z03 A;  1SQV E;  4NB9 A;  5AEU A;  2DE5 D;  3L75 E;  1WQL A;  4HM0 A;  1JM1 A;  4QUR A;  5KLI C;  2DE7 A;  2E4P A;  2YFJ A;  1G8K B;  3L74 E;  2Q3W A;  2QJK C;  2A06 E;  4HKV A;  4AAY B;  4HM5 A;  3TGU E;  3FOU A;  3VCP A;  1EG9 A;  3GOB A;  3GZX A;  3L73 E;  2E4Q A;  4NBG D;  4NBD D;  2YFL A;  4NB8 D;  3GL0 A;  2BCC E;  4NBB A;  4H44 D;  1O7M A;  1EZV E;  3VMH A;  4H13 D;  1SQB E;  1Q90 C;  4NBE D;  5HL4 A;  3H1I E;  2FYU E;  3DQY A;  1PP9 E;  3H1J E;  1NTM E;  2HMK A;  3GTE A;  4NBH A;  2GBW A;  3GTS A;  3GZY A;  3H1L E;  2ZT9 D;  2I7F A;  3AZC A;  3EQQ A;  3GL2 A;  3GKQ A;  4HM1 A;  3VMI D;  3CWB E;  2D2C D;  1ULI A;  4QUP A;  4QDD A;  3H1K E;  4OGQ D;  2XRX A;  5AEW A;  3CX5 E;  1G8J B;  3CXH E;  2YVJ B;  2QJY C;  2DE6 D;  2HMO A;  3EN1 A;  3VCA A;  1BE3 E;  4NB9 D;  2XR8 A;  2HMM A;  4HM6 A;  1RIE A;  2XSO A;  2YIU C;  1PPJ E;  3VMG A;  2GBX A;  3H1H E;  1VM9 A;  4HM4 A;  4NBB D;  1O7H A;  1NYK A;  2NVE A;  2B24 A;  4QDF A;  1UUW A;  5KLV E;  1WW9 A;  1SJG A;  4PD4 E;  2HMN A;  1NTK E;  1O7W A;  4NBH D;  4H0L D; 
#chains in the Genus database with same CATH homology
 2NVF A;  4QDF B;  5KKZ C;  3C0D A;  1O7N A;  1VCK A;  3L71 E;  4U3F E;  2IBZ E;  1L0N E;  3N0Q A;  4NBG A;  1Z01 A;  2DE7 D;  3GCF A;  1FQT A;  2E76 D;  2QJP C;  3L70 E;  1UUV A;  1RFS A;  4HM3 A;  1SQX E;  1O7G A;  4NBC A;  4HM2 A;  1L0L E;  3L72 E;  1NU1 E;  2HML A;  4NBF A;  4NBA A;  3VMH D;  2HMJ A;  4P1C H;  1SQP E;  1ZRT E;  1KYO E;  1BCC E;  4HM7 A;  4QCK A;  1O7P A;  2E75 D;  1VF5 D;  1P84 E;  2DE6 A;  2E74 D;  1NTZ E;  2NUK A;  5CXM A;  2DE5 A;  2ZYL A;  2NVG A;  3D89 A;  2XSH A;  5BOK A;  4NBD A;  4NB8 A;  2QPZ A;  4AIV A;  1ULJ A;  1SQQ E;  2NWF A;  1KB9 E;  4EMJ B;  2NUM A;  4QDC A;  4NBE A;  2BMR A;  4HJL A;  4NBC D;  1NDO A;  3VMG D;  4QUQ A;  2B1X A;  1Z02 A;  2YFI A;  4NBF D;  4NBA D;  2JZA A;  3GB4 A;  3VMI A;  2BMQ A;  2CKF A;  3GKE A;  2FYN C;  4P1B H;  2BMO A;  4PV1 D;  3BCC E;  4HM8 A;  2JO6 A;  3GCE A;  1Z03 A;  1SQV E;  4NB9 A;  5AEU A;  2DE5 D;  3L75 E;  1WQL A;  4HM0 A;  1JM1 A;  4QUR A;  5KLI C;  2DE7 A;  2E4P A;  2YFJ A;  1G8K B;  3L74 E;  2Q3W A;  2QJK C;  2A06 E;  4HKV A;  4AAY B;  4HM5 A;  3TGU E;  3FOU A;  3VCP A;  1EG9 A;  3GOB A;  3GZX A;  3L73 E;  2E4Q A;  4NBG D;  4NBD D;  2YFL A;  4NB8 D;  3GL0 A;  2BCC E;  4NBB A;  4H44 D;  1O7M A;  1EZV E;  3VMH A;  4H13 D;  1SQB E;  1Q90 C;  4NBE D;  5HL4 A;  3H1I E;  2FYU E;  3DQY A;  1PP9 E;  3H1J E;  1NTM E;  2HMK A;  3GTE A;  4NBH A;  2GBW A;  3GTS A;  3GZY A;  3H1L E;  2ZT9 D;  2I7F A;  3AZC A;  3EQQ A;  3GL2 A;  3GKQ A;  4HM1 A;  3VMI D;  3CWB E;  2D2C D;  1ULI A;  4QUP A;  4QDD A;  3H1K E;  4OGQ D;  2XRX A;  5AEW A;  3CX5 E;  1G8J B;  3CXH E;  2YVJ B;  2QJY C;  2DE6 D;  2HMO A;  3EN1 A;  3VCA A;  1BE3 E;  4NB9 D;  2XR8 A;  2HMM A;  4HM6 A;  1RIE A;  2XSO A;  2YIU C;  1PPJ E;  3VMG A;  2GBX A;  3H1H E;  1VM9 A;  4HM4 A;  4NBB D;  1O7H A;  1NYK A;  2NVE A;  2B24 A;  4QDF A;  1UUW A;  5KLV E;  1WW9 A;  1SJG A;  4PD4 E;  2HMN A;  1NTK E;  1O7W A;  4NBH D;  4H0L D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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