1UUWA

Naphthalene 1,2-dioxygenase with nitric oxide bound in the active site.
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title No Binding to Naphthalene Dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 159
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2004-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1uuwA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1uuwA01
3GL0A 1ZRTE 1BE3E 2HMKA 2Q3WA 2QPZA 4QDCA 1SJGA 4NBDA 2XSOA 1SQPE 5AEWA 4NBGA 2A06E 4HM1A 4AIVA 1NU1E 4HM4A 1SQQE 4QDFA 3VMGA 3L70E 1O7MA 4PD4E 4QDFB 1SQXE 3EN1A 4P1BH 1EZVE 1L0LE 2JO6A 3FOUA 3GTEA 3GKEA 3L74E 1WQLA 4HM8A 1UUWA 2QJKC 4HM5A 3C0DA 3VCPA 3VMHD 2YVJB 3CXHE 2NWFA 1G8KB 1Z01A 3GL2A 4HM2A 1VF5D 1BCCE 1ULIA 4NBED 3L75E 1PP9E 2YFIA 2NUKA 4NBCD 3GCFA 3VMHA 2I7FA 1O7GA 4HM0A 2YFLA 4H44D 4NBAD 1Z02A 1KYOE 2HMMA 2QJYC 3N0QA 2E76D 2YFJA 1NTKE 3GTSA 4NBEA 2GBWA 2FYNC 4H13D 4NB8D 4P1CH 2HMOA 1PPJE 3VCAA 5BOKA 1Z03A 4NBCA 1NDOA 4U3FE 3CWBE 3H1IE 1NTME 1Q90C 1SQBE 2NVFA 4NBAA 2BMQA 2BMRA 3GKQA 2JZAA 1G8JB 3GOBA 3TGUE 4QURA 1NYKA 1L0NE 5HL4A 3H1JE 4NB8A 4HM3A 4OGQD 2E75D 4HM7A 4NBFD 1RFSA 2IBZE 2HMLA 1JM1A 2HMJA 4EMJB 5AEUA 2NVEA 1P84E 3DQYA 2XSHA 1UUVA 1VM9A 5KKZC 1FQTA 2E4QA 3H1HE 4HJLA 4QUQA 2DE7D 3GB4A 4NBFA 3VMID 2D2CD 3GZXA 2CKFA 4NBBD 4AAYB 3GCEA 1O7HA 2HMNA 4H0LD 4PV1D 1EG9A 3BCCE 4QDDA 4NB9D 2FYUE 1O7NA 2YIUC 2NVGA 2DE6D 3EQQA 2BCCE 2DE7A 3H1KE 3VMIA 1WW9A 4NBBA 2DE5D 2B24A 3L73E 1NTZE 4QUPA 4NB9A 2XRXA 3CX5E 1O7PA 2E74D 3GZYA 5KLIC 3L71E 2NUMA 2DE6A 4NBHD 2B1XA 3H1LE 5KLVE 2ZT9D 1ULJA 4QCKA 2GBXA 2DE5A 2ZYLA 4NBDD 1KB9E 1RIEA 3D89A 3AZCA 1VCKA 4NBGD 2XR8A 4HM6A 4HKVA 1SQVE 3VMGD 3L72E 1O7WA 4NBHA 2BMOA 2QJPC 5CXMA 2E4PA
chains in the Genus database with same CATH superfamily
3GL0A 1ZRTE 1BE3E 2HMKA 2Q3WA 2QPZA 4QDCA 1SJGA 4NBDA 2XSOA 1SQPE 5AEWA 4NBGA 2A06E 4HM1A 4AIVA 1NU1E 4HM4A 1SQQE 4QDFA 3VMGA 3L70E 1O7MA 4PD4E 4QDFB 1SQXE 3EN1A 4P1BH 1EZVE 1L0LE 2JO6A 3FOUA 3GTEA 3GKEA 3L74E 1WQLA 4HM8A 1UUWA 2QJKC 4HM5A 3C0DA 3VCPA 3VMHD 2YVJB 3CXHE 2NWFA 1G8KB 1Z01A 3GL2A 4HM2A 1VF5D 1BCCE 1ULIA 4NBED 3L75E 1PP9E 2YFIA 2NUKA 4NBCD 3GCFA 3VMHA 2I7FA 1O7GA 4HM0A 2YFLA 4H44D 4NBAD 1Z02A 1KYOE 2HMMA 2QJYC 3N0QA 2E76D 2YFJA 1NTKE 3GTSA 4NBEA 2GBWA 2FYNC 4H13D 4NB8D 4P1CH 2HMOA 1PPJE 3VCAA 5BOKA 1Z03A 4NBCA 1NDOA 4U3FE 3CWBE 3H1IE 1NTME 1Q90C 1SQBE 2NVFA 4NBAA 2BMQA 2BMRA 3GKQA 2JZAA 1G8JB 3GOBA 3TGUE 4QURA 1NYKA 1L0NE 5HL4A 3H1JE 4NB8A 4HM3A 4OGQD 2E75D 4HM7A 4NBFD 1RFSA 2IBZE 2HMLA 1JM1A 2HMJA 4EMJB 5AEUA 2NVEA 1P84E 3DQYA 2XSHA 1UUVA 1VM9A 5KKZC 1FQTA 2E4QA 3H1HE 4HJLA 4QUQA 2DE7D 3GB4A 4NBFA 3VMID 2D2CD 3GZXA 2CKFA 4NBBD 4AAYB 3GCEA 1O7HA 2HMNA 4H0LD 4PV1D 1EG9A 3BCCE 4QDDA 4NB9D 2FYUE 1O7NA 2YIUC 2NVGA 2DE6D 3EQQA 2BCCE 2DE7A 3H1KE 3VMIA 1WW9A 4NBBA 2DE5D 2B24A 3L73E 1NTZE 4QUPA 4NB9A 2XRXA 3CX5E 1O7PA 2E74D 3GZYA 5KLIC 3L71E 2NUMA 2DE6A 4NBHD 2B1XA 3H1LE 5KLVE 2ZT9D 1ULJA 4QCKA 2GBXA 2DE5A 2ZYLA 4NBDD 1KB9E 1RIEA 3D89A 3AZCA 1VCKA 4NBGD 2XR8A 4HM6A 4HKVA 1SQVE 3VMGD 3L72E 1O7WA 4NBHA 2BMOA 2QJPC 5CXMA 2E4PA
chains in the Genus database with same CATH topology
3GL0A 1ZRTE 1BE3E 2HMKA 2Q3WA 2QPZA 4QDCA 1SJGA 4NBDA 2XSOA 1SQPE 5AEWA 4NBGA 2A06E 4HM1A 4AIVA 1NU1E 4HM4A 1SQQE 4QDFA 3VMGA 3L70E 1O7MA 4PD4E 4QDFB 1SQXE 3EN1A 4P1BH 1EZVE 1L0LE 2JO6A 3FOUA 3GTEA 3GKEA 3L74E 1WQLA 4HM8A 1UUWA 2QJKC 4HM5A 3C0DA 3VCPA 3VMHD 2YVJB 3CXHE 2NWFA 1G8KB 1Z01A 3GL2A 4HM2A 1VF5D 1BCCE 1ULIA 4NBED 3L75E 1PP9E 2YFIA 2NUKA 4NBCD 3GCFA 3VMHA 2I7FA 1O7GA 4HM0A 2YFLA 4H44D 4NBAD 1Z02A 1KYOE 2HMMA 2QJYC 3N0QA 2E76D 2YFJA 1NTKE 3GTSA 4NBEA 2GBWA 2FYNC 4H13D 4NB8D 4P1CH 2HMOA 1PPJE 3VCAA 5BOKA 1Z03A 4NBCA 1NDOA 4U3FE 3CWBE 3H1IE 1NTME 1Q90C 1SQBE 2NVFA 4NBAA 2BMQA 2BMRA 3GKQA 2JZAA 1G8JB 3GOBA 3TGUE 4QURA 1NYKA 1L0NE 5HL4A 3H1JE 4NB8A 4HM3A 4OGQD 2E75D 4HM7A 4NBFD 1RFSA 2IBZE 2HMLA 1JM1A 2HMJA 4EMJB 5AEUA 2NVEA 1P84E 3DQYA 2XSHA 1UUVA 1VM9A 5KKZC 1FQTA 2E4QA 3H1HE 4HJLA 4QUQA 2DE7D 3GB4A 4NBFA 3VMID 2D2CD 3GZXA 2CKFA 4NBBD 4AAYB 3GCEA 1O7HA 2HMNA 4H0LD 4PV1D 1EG9A 3BCCE 4QDDA 4NB9D 2FYUE 1O7NA 2YIUC 2NVGA 2DE6D 3EQQA 2BCCE 2DE7A 3H1KE 3VMIA 1WW9A 4NBBA 2DE5D 2B24A 3L73E 1NTZE 4QUPA 4NB9A 2XRXA 3CX5E 1O7PA 2E74D 3GZYA 5KLIC 3L71E 2NUMA 2DE6A 4NBHD 2B1XA 3H1LE 5KLVE 2ZT9D 1ULJA 4QCKA 2GBXA 2DE5A 2ZYLA 4NBDD 1KB9E 1RIEA 3D89A 3AZCA 1VCKA 4NBGD 2XR8A 4HM6A 4HKVA 1SQVE 3VMGD 3L72E 1O7WA 4NBHA 2BMOA 2QJPC 5CXMA 2E4PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GL0 A;  1ZRT E;  1BE3 E;  2HMK A;  2Q3W A;  2QPZ A;  4QDC A;  1SJG A;  4NBD A;  2XSO A;  1SQP E;  5AEW A;  4NBG A;  2A06 E;  4HM1 A;  4AIV A;  1NU1 E;  4HM4 A;  1SQQ E;  4QDF A;  3VMG A;  3L70 E;  1O7M A;  4PD4 E;  4QDF B;  1SQX E;  3EN1 A;  4P1B H;  1EZV E;  1L0L E;  2JO6 A;  3FOU A;  3GTE A;  3GKE A;  3L74 E;  1WQL A;  4HM8 A;  1UUW A;  2QJK C;  4HM5 A;  3C0D A;  3VCP A;  3VMH D;  2YVJ B;  3CXH E;  2NWF A;  1G8K B;  1Z01 A;  3GL2 A;  4HM2 A;  1VF5 D;  1BCC E;  1ULI A;  4NBE D;  3L75 E;  1PP9 E;  2YFI A;  2NUK A;  4NBC D;  3GCF A;  3VMH A;  2I7F A;  1O7G A;  4HM0 A;  2YFL A;  4H44 D;  4NBA D;  1Z02 A;  1KYO E;  2HMM A;  2QJY C;  3N0Q A;  2E76 D;  2YFJ A;  1NTK E;  3GTS A;  4NBE A;  2GBW A;  2FYN C;  4H13 D;  4NB8 D;  4P1C H;  2HMO A;  1PPJ E;  3VCA A;  5BOK A;  1Z03 A;  4NBC A;  1NDO A;  4U3F E;  3CWB E;  3H1I E;  1NTM E;  1Q90 C;  1SQB E;  2NVF A;  4NBA A;  2BMQ A;  2BMR A;  3GKQ A;  2JZA A;  1G8J B;  3GOB A;  3TGU E;  4QUR A;  1NYK A;  1L0N E;  5HL4 A;  3H1J E;  4NB8 A;  4HM3 A;  4OGQ D;  2E75 D;  4HM7 A;  4NBF D;  1RFS A;  2IBZ E;  2HML A;  1JM1 A;  2HMJ A;  4EMJ B;  5AEU A;  2NVE A;  1P84 E;  3DQY A;  2XSH A;  1UUV A;  1VM9 A;  5KKZ C;  1FQT A;  2E4Q A;  3H1H E;  4HJL A;  4QUQ A;  2DE7 D;  3GB4 A;  4NBF A;  3VMI D;  2D2C D;  3GZX A;  2CKF A;  4NBB D;  4AAY B;  3GCE A;  1O7H A;  2HMN A;  4H0L D;  4PV1 D;  1EG9 A;  3BCC E;  4QDD A;  4NB9 D;  2FYU E;  1O7N A;  2YIU C;  2NVG A;  2DE6 D;  3EQQ A;  2BCC E;  2DE7 A;  3H1K E;  3VMI A;  1WW9 A;  4NBB A;  2DE5 D;  2B24 A;  3L73 E;  1NTZ E;  4QUP A;  4NB9 A;  2XRX A;  3CX5 E;  1O7P A;  2E74 D;  3GZY A;  5KLI C;  3L71 E;  2NUM A;  2DE6 A;  4NBH D;  2B1X A;  3H1L E;  5KLV E;  2ZT9 D;  1ULJ A;  4QCK A;  2GBX A;  2DE5 A;  2ZYL A;  4NBD D;  1KB9 E;  1RIE A;  3D89 A;  3AZC A;  1VCK A;  4NBG D;  2XR8 A;  4HM6 A;  4HKV A;  1SQV E;  3VMG D;  3L72 E;  1O7W A;  4NBH A;  2BMO A;  2QJP C;  5CXM A;  2E4P A; 
#chains in the Genus database with same CATH topology
 3GL0 A;  1ZRT E;  1BE3 E;  2HMK A;  2Q3W A;  2QPZ A;  4QDC A;  1SJG A;  4NBD A;  2XSO A;  1SQP E;  5AEW A;  4NBG A;  2A06 E;  4HM1 A;  4AIV A;  1NU1 E;  4HM4 A;  1SQQ E;  4QDF A;  3VMG A;  3L70 E;  1O7M A;  4PD4 E;  4QDF B;  1SQX E;  3EN1 A;  4P1B H;  1EZV E;  1L0L E;  2JO6 A;  3FOU A;  3GTE A;  3GKE A;  3L74 E;  1WQL A;  4HM8 A;  1UUW A;  2QJK C;  4HM5 A;  3C0D A;  3VCP A;  3VMH D;  2YVJ B;  3CXH E;  2NWF A;  1G8K B;  1Z01 A;  3GL2 A;  4HM2 A;  1VF5 D;  1BCC E;  1ULI A;  4NBE D;  3L75 E;  1PP9 E;  2YFI A;  2NUK A;  4NBC D;  3GCF A;  3VMH A;  2I7F A;  1O7G A;  4HM0 A;  2YFL A;  4H44 D;  4NBA D;  1Z02 A;  1KYO E;  2HMM A;  2QJY C;  3N0Q A;  2E76 D;  2YFJ A;  1NTK E;  3GTS A;  4NBE A;  2GBW A;  2FYN C;  4H13 D;  4NB8 D;  4P1C H;  2HMO A;  1PPJ E;  3VCA A;  5BOK A;  1Z03 A;  4NBC A;  1NDO A;  4U3F E;  3CWB E;  3H1I E;  1NTM E;  1Q90 C;  1SQB E;  2NVF A;  4NBA A;  2BMQ A;  2BMR A;  3GKQ A;  2JZA A;  1G8J B;  3GOB A;  3TGU E;  4QUR A;  1NYK A;  1L0N E;  5HL4 A;  3H1J E;  4NB8 A;  4HM3 A;  4OGQ D;  2E75 D;  4HM7 A;  4NBF D;  1RFS A;  2IBZ E;  2HML A;  1JM1 A;  2HMJ A;  4EMJ B;  5AEU A;  2NVE A;  1P84 E;  3DQY A;  2XSH A;  1UUV A;  1VM9 A;  5KKZ C;  1FQT A;  2E4Q A;  3H1H E;  4HJL A;  4QUQ A;  2DE7 D;  3GB4 A;  4NBF A;  3VMI D;  2D2C D;  3GZX A;  2CKF A;  4NBB D;  4AAY B;  3GCE A;  1O7H A;  2HMN A;  4H0L D;  4PV1 D;  1EG9 A;  3BCC E;  4QDD A;  4NB9 D;  2FYU E;  1O7N A;  2YIU C;  2NVG A;  2DE6 D;  3EQQ A;  2BCC E;  2DE7 A;  3H1K E;  3VMI A;  1WW9 A;  4NBB A;  2DE5 D;  2B24 A;  3L73 E;  1NTZ E;  4QUP A;  4NB9 A;  2XRX A;  3CX5 E;  1O7P A;  2E74 D;  3GZY A;  5KLI C;  3L71 E;  2NUM A;  2DE6 A;  4NBH D;  2B1X A;  3H1L E;  5KLV E;  2ZT9 D;  1ULJ A;  4QCK A;  2GBX A;  2DE5 A;  2ZYL A;  4NBD D;  1KB9 E;  1RIE A;  3D89 A;  3AZC A;  1VCK A;  4NBG D;  2XR8 A;  4HM6 A;  4HKV A;  1SQV E;  3VMG D;  3L72 E;  1O7W A;  4NBH A;  2BMO A;  2QJP C;  5CXM A;  2E4P A; 
#chains in the Genus database with same CATH homology
 3GL0 A;  1ZRT E;  1BE3 E;  2HMK A;  2Q3W A;  2QPZ A;  4QDC A;  1SJG A;  4NBD A;  2XSO A;  1SQP E;  5AEW A;  4NBG A;  2A06 E;  4HM1 A;  4AIV A;  1NU1 E;  4HM4 A;  1SQQ E;  4QDF A;  3VMG A;  3L70 E;  1O7M A;  4PD4 E;  4QDF B;  1SQX E;  3EN1 A;  4P1B H;  1EZV E;  1L0L E;  2JO6 A;  3FOU A;  3GTE A;  3GKE A;  3L74 E;  1WQL A;  4HM8 A;  1UUW A;  2QJK C;  4HM5 A;  3C0D A;  3VCP A;  3VMH D;  2YVJ B;  3CXH E;  2NWF A;  1G8K B;  1Z01 A;  3GL2 A;  4HM2 A;  1VF5 D;  1BCC E;  1ULI A;  4NBE D;  3L75 E;  1PP9 E;  2YFI A;  2NUK A;  4NBC D;  3GCF A;  3VMH A;  2I7F A;  1O7G A;  4HM0 A;  2YFL A;  4H44 D;  4NBA D;  1Z02 A;  1KYO E;  2HMM A;  2QJY C;  3N0Q A;  2E76 D;  2YFJ A;  1NTK E;  3GTS A;  4NBE A;  2GBW A;  2FYN C;  4H13 D;  4NB8 D;  4P1C H;  2HMO A;  1PPJ E;  3VCA A;  5BOK A;  1Z03 A;  4NBC A;  1NDO A;  4U3F E;  3CWB E;  3H1I E;  1NTM E;  1Q90 C;  1SQB E;  2NVF A;  4NBA A;  2BMQ A;  2BMR A;  3GKQ A;  2JZA A;  1G8J B;  3GOB A;  3TGU E;  4QUR A;  1NYK A;  1L0N E;  5HL4 A;  3H1J E;  4NB8 A;  4HM3 A;  4OGQ D;  2E75 D;  4HM7 A;  4NBF D;  1RFS A;  2IBZ E;  2HML A;  1JM1 A;  2HMJ A;  4EMJ B;  5AEU A;  2NVE A;  1P84 E;  3DQY A;  2XSH A;  1UUV A;  1VM9 A;  5KKZ C;  1FQT A;  2E4Q A;  3H1H E;  4HJL A;  4QUQ A;  2DE7 D;  3GB4 A;  4NBF A;  3VMI D;  2D2C D;  3GZX A;  2CKF A;  4NBB D;  4AAY B;  3GCE A;  1O7H A;  2HMN A;  4H0L D;  4PV1 D;  1EG9 A;  3BCC E;  4QDD A;  4NB9 D;  2FYU E;  1O7N A;  2YIU C;  2NVG A;  2DE6 D;  3EQQ A;  2BCC E;  2DE7 A;  3H1K E;  3VMI A;  1WW9 A;  4NBB A;  2DE5 D;  2B24 A;  3L73 E;  1NTZ E;  4QUP A;  4NB9 A;  2XRX A;  3CX5 E;  1O7P A;  2E74 D;  3GZY A;  5KLI C;  3L71 E;  2NUM A;  2DE6 A;  4NBH D;  2B1X A;  3H1L E;  5KLV E;  2ZT9 D;  1ULJ A;  4QCK A;  2GBX A;  2DE5 A;  2ZYL A;  4NBD D;  1KB9 E;  1RIE A;  3D89 A;  3AZC A;  1VCK A;  4NBG D;  2XR8 A;  4HM6 A;  4HKV A;  1SQV E;  3VMG D;  3L72 E;  1O7W A;  4NBH A;  2BMO A;  2QJP C;  5CXM A;  2E4P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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