1UUWA

Naphthalene 1,2-dioxygenase with nitric oxide bound in the active site.
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title No Binding to Naphthalene Dioxygenase.
pubmed doi rcsb
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 159
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2004-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1uuwA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1uuwA01
2FYUE 4NB9D 4QUQA 4HM5A 3GKQA 2DE5A 1NYKA 4QCKA 1NDOA 4HJLA 4AIVA 3VMGD 2BMOA 4HM6A 4P1BH 2B24A 3AZCA 1ULIA 1SQPE 2YFLA 2NUMA 3CWBE 2HMOA 3GL2A 3VMHD 4NBDA 2NWFA 4HM4A 1ZRTE 3GOBA 1SQXE 5KLVE 2E4PA 2GBXA 1L0NE 4U3FE 3EQQA 3FOUA 3GCEA 2E75D 4HM8A 4NBEA 1BCCE 3L74E 2XR8A 5KLIC 4P1CH 1O7MA 3CX5E 3TGUE 3VMGA 4NBAD 2JO6A 2HMLA 4HM2A 4QDDA 1G8JB 2YVJB 1BE3E 3VCAA 3C0DA 3H1LE 2DE7A 3H1HE 2BCCE 1PP9E 4QDCA 4QUPA 4EMJB 2QJYC 2NUKA 2NVGA 1O7WA 1SQBE 1UUVA 4NBBA 3L73E 1O7HA 3VCPA 4QDFA 2YFIA 5AEWA 4NBHA 2DE6A 2XSHA 4HKVA 4HM1A 1VM9A 4NB9A 1RFSA 2CKFA 4H44D 3GZYA 5KKZC 2Q3WA 2XSOA 1Z01A 1EZVE 2YFJA 4QDFB 2HMKA 1SQVE 3VMID 4QURA 1Q90C 2YIUC 4NBCD 1FQTA 1NTZE 1VF5D 4NB8D 3VMHA 2B1XA 5HL4A 1NU1E 1VCKA 2ZYLA 5AEUA 2NVFA 3L71E 1KYOE 3H1KE 3GTSA 1Z03A 2QJPC 4HM3A 1KB9E 3H1JE 3L72E 3GB4A 3L75E 2NVEA 4HM7A 1SJGA 4NBAA 2BMRA 2HMJA 1O7GA 4NB8A 2IBZE 2ZT9D 4NBDD 1L0LE 1RIEA 2D2CD 2HMNA 2JZAA 3EN1A 4OGQD 3BCCE 4NBED 4NBFD 2GBWA 3L70E 1G8KB 4AAYB 1WW9A 1Z02A 1P84E 3GCFA 4HM0A 1O7PA 4H0LD 4PV1D 2I7FA 2FYNC 1ULJA 4NBGD 3N0QA 3D89A 1WQLA 2BMQA 2DE7D 2E4QA 3DQYA 4PD4E 1NTKE 3CXHE 3GZXA 5CXMA 5BOKA 2E74D 2QJKC 1JM1A 1UUWA 2QPZA 1EG9A 2DE5D 3VMIA 1PPJE 2E76D 4NBFA 2XRXA 4H13D 4NBCA 4NBBD 1O7NA 4NBGA 2A06E 3GTEA 3GL0A 2HMMA 1SQQE 3GKEA 4NBHD 2DE6D 1NTME 3H1IE
chains in the Genus database with same CATH superfamily
2FYUE 4NB9D 4QUQA 4HM5A 3GKQA 2DE5A 1NYKA 4QCKA 1NDOA 4HJLA 4AIVA 3VMGD 2BMOA 4HM6A 4P1BH 2B24A 3AZCA 1ULIA 1SQPE 2YFLA 2NUMA 3CWBE 2HMOA 3GL2A 3VMHD 4NBDA 2NWFA 4HM4A 1ZRTE 3GOBA 1SQXE 5KLVE 2E4PA 2GBXA 1L0NE 4U3FE 3EQQA 3FOUA 3GCEA 2E75D 4HM8A 4NBEA 1BCCE 3L74E 2XR8A 5KLIC 4P1CH 1O7MA 3CX5E 3TGUE 3VMGA 4NBAD 2JO6A 2HMLA 4HM2A 4QDDA 1G8JB 2YVJB 1BE3E 3VCAA 3C0DA 3H1LE 2DE7A 3H1HE 2BCCE 1PP9E 4QDCA 4QUPA 4EMJB 2QJYC 2NUKA 2NVGA 1O7WA 1SQBE 1UUVA 4NBBA 3L73E 1O7HA 3VCPA 4QDFA 2YFIA 5AEWA 4NBHA 2DE6A 2XSHA 4HKVA 4HM1A 1VM9A 4NB9A 1RFSA 2CKFA 4H44D 3GZYA 5KKZC 2Q3WA 2XSOA 1Z01A 1EZVE 2YFJA 4QDFB 2HMKA 1SQVE 3VMID 4QURA 1Q90C 2YIUC 4NBCD 1FQTA 1NTZE 1VF5D 4NB8D 3VMHA 2B1XA 5HL4A 1NU1E 1VCKA 2ZYLA 5AEUA 2NVFA 3L71E 1KYOE 3H1KE 3GTSA 1Z03A 2QJPC 4HM3A 1KB9E 3H1JE 3L72E 3GB4A 3L75E 2NVEA 4HM7A 1SJGA 4NBAA 2BMRA 2HMJA 1O7GA 4NB8A 2IBZE 2ZT9D 4NBDD 1L0LE 1RIEA 2D2CD 2HMNA 2JZAA 3EN1A 4OGQD 3BCCE 4NBED 4NBFD 2GBWA 3L70E 1G8KB 4AAYB 1WW9A 1Z02A 1P84E 3GCFA 4HM0A 1O7PA 4H0LD 4PV1D 2I7FA 2FYNC 1ULJA 4NBGD 3N0QA 3D89A 1WQLA 2BMQA 2DE7D 2E4QA 3DQYA 4PD4E 1NTKE 3CXHE 3GZXA 5CXMA 5BOKA 2E74D 2QJKC 1JM1A 1UUWA 2QPZA 1EG9A 2DE5D 3VMIA 1PPJE 2E76D 4NBFA 2XRXA 4H13D 4NBCA 4NBBD 1O7NA 4NBGA 2A06E 3GTEA 3GL0A 2HMMA 1SQQE 3GKEA 4NBHD 2DE6D 1NTME 3H1IE
chains in the Genus database with same CATH topology
2FYUE 4NB9D 4QUQA 4HM5A 3GKQA 2DE5A 1NYKA 4QCKA 1NDOA 4HJLA 4AIVA 3VMGD 2BMOA 4HM6A 4P1BH 2B24A 3AZCA 1ULIA 1SQPE 2YFLA 2NUMA 3CWBE 2HMOA 3GL2A 3VMHD 4NBDA 2NWFA 4HM4A 1ZRTE 3GOBA 1SQXE 5KLVE 2E4PA 2GBXA 1L0NE 4U3FE 3EQQA 3FOUA 3GCEA 2E75D 4HM8A 4NBEA 1BCCE 3L74E 2XR8A 5KLIC 4P1CH 1O7MA 3CX5E 3TGUE 3VMGA 4NBAD 2JO6A 2HMLA 4HM2A 4QDDA 1G8JB 2YVJB 1BE3E 3VCAA 3C0DA 3H1LE 2DE7A 3H1HE 2BCCE 1PP9E 4QDCA 4QUPA 4EMJB 2QJYC 2NUKA 2NVGA 1O7WA 1SQBE 1UUVA 4NBBA 3L73E 1O7HA 3VCPA 4QDFA 2YFIA 5AEWA 4NBHA 2DE6A 2XSHA 4HKVA 4HM1A 1VM9A 4NB9A 1RFSA 2CKFA 4H44D 3GZYA 5KKZC 2Q3WA 2XSOA 1Z01A 1EZVE 2YFJA 4QDFB 2HMKA 1SQVE 3VMID 4QURA 1Q90C 2YIUC 4NBCD 1FQTA 1NTZE 1VF5D 4NB8D 3VMHA 2B1XA 5HL4A 1NU1E 1VCKA 2ZYLA 5AEUA 2NVFA 3L71E 1KYOE 3H1KE 3GTSA 1Z03A 2QJPC 4HM3A 1KB9E 3H1JE 3L72E 3GB4A 3L75E 2NVEA 4HM7A 1SJGA 4NBAA 2BMRA 2HMJA 1O7GA 4NB8A 2IBZE 2ZT9D 4NBDD 1L0LE 1RIEA 2D2CD 2HMNA 2JZAA 3EN1A 4OGQD 3BCCE 4NBED 4NBFD 2GBWA 3L70E 1G8KB 4AAYB 1WW9A 1Z02A 1P84E 3GCFA 4HM0A 1O7PA 4H0LD 4PV1D 2I7FA 2FYNC 1ULJA 4NBGD 3N0QA 3D89A 1WQLA 2BMQA 2DE7D 2E4QA 3DQYA 4PD4E 1NTKE 3CXHE 3GZXA 5CXMA 5BOKA 2E74D 2QJKC 1JM1A 1UUWA 2QPZA 1EG9A 2DE5D 3VMIA 1PPJE 2E76D 4NBFA 2XRXA 4H13D 4NBCA 4NBBD 1O7NA 4NBGA 2A06E 3GTEA 3GL0A 2HMMA 1SQQE 3GKEA 4NBHD 2DE6D 1NTME 3H1IE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FYU E;  4NB9 D;  4QUQ A;  4HM5 A;  3GKQ A;  2DE5 A;  1NYK A;  4QCK A;  1NDO A;  4HJL A;  4AIV A;  3VMG D;  2BMO A;  4HM6 A;  4P1B H;  2B24 A;  3AZC A;  1ULI A;  1SQP E;  2YFL A;  2NUM A;  3CWB E;  2HMO A;  3GL2 A;  3VMH D;  4NBD A;  2NWF A;  4HM4 A;  1ZRT E;  3GOB A;  1SQX E;  5KLV E;  2E4P A;  2GBX A;  1L0N E;  4U3F E;  3EQQ A;  3FOU A;  3GCE A;  2E75 D;  4HM8 A;  4NBE A;  1BCC E;  3L74 E;  2XR8 A;  5KLI C;  4P1C H;  1O7M A;  3CX5 E;  3TGU E;  3VMG A;  4NBA D;  2JO6 A;  2HML A;  4HM2 A;  4QDD A;  1G8J B;  2YVJ B;  1BE3 E;  3VCA A;  3C0D A;  3H1L E;  2DE7 A;  3H1H E;  2BCC E;  1PP9 E;  4QDC A;  4QUP A;  4EMJ B;  2QJY C;  2NUK A;  2NVG A;  1O7W A;  1SQB E;  1UUV A;  4NBB A;  3L73 E;  1O7H A;  3VCP A;  4QDF A;  2YFI A;  5AEW A;  4NBH A;  2DE6 A;  2XSH A;  4HKV A;  4HM1 A;  1VM9 A;  4NB9 A;  1RFS A;  2CKF A;  4H44 D;  3GZY A;  5KKZ C;  2Q3W A;  2XSO A;  1Z01 A;  1EZV E;  2YFJ A;  4QDF B;  2HMK A;  1SQV E;  3VMI D;  4QUR A;  1Q90 C;  2YIU C;  4NBC D;  1FQT A;  1NTZ E;  1VF5 D;  4NB8 D;  3VMH A;  2B1X A;  5HL4 A;  1NU1 E;  1VCK A;  2ZYL A;  5AEU A;  2NVF A;  3L71 E;  1KYO E;  3H1K E;  3GTS A;  1Z03 A;  2QJP C;  4HM3 A;  1KB9 E;  3H1J E;  3L72 E;  3GB4 A;  3L75 E;  2NVE A;  4HM7 A;  1SJG A;  4NBA A;  2BMR A;  2HMJ A;  1O7G A;  4NB8 A;  2IBZ E;  2ZT9 D;  4NBD D;  1L0L E;  1RIE A;  2D2C D;  2HMN A;  2JZA A;  3EN1 A;  4OGQ D;  3BCC E;  4NBE D;  4NBF D;  2GBW A;  3L70 E;  1G8K B;  4AAY B;  1WW9 A;  1Z02 A;  1P84 E;  3GCF A;  4HM0 A;  1O7P A;  4H0L D;  4PV1 D;  2I7F A;  2FYN C;  1ULJ A;  4NBG D;  3N0Q A;  3D89 A;  1WQL A;  2BMQ A;  2DE7 D;  2E4Q A;  3DQY A;  4PD4 E;  1NTK E;  3CXH E;  3GZX A;  5CXM A;  5BOK A;  2E74 D;  2QJK C;  1JM1 A;  1UUW A;  2QPZ A;  1EG9 A;  2DE5 D;  3VMI A;  1PPJ E;  2E76 D;  4NBF A;  2XRX A;  4H13 D;  4NBC A;  4NBB D;  1O7N A;  4NBG A;  2A06 E;  3GTE A;  3GL0 A;  2HMM A;  1SQQ E;  3GKE A;  4NBH D;  2DE6 D;  1NTM E;  3H1I E; 
#chains in the Genus database with same CATH topology
 2FYU E;  4NB9 D;  4QUQ A;  4HM5 A;  3GKQ A;  2DE5 A;  1NYK A;  4QCK A;  1NDO A;  4HJL A;  4AIV A;  3VMG D;  2BMO A;  4HM6 A;  4P1B H;  2B24 A;  3AZC A;  1ULI A;  1SQP E;  2YFL A;  2NUM A;  3CWB E;  2HMO A;  3GL2 A;  3VMH D;  4NBD A;  2NWF A;  4HM4 A;  1ZRT E;  3GOB A;  1SQX E;  5KLV E;  2E4P A;  2GBX A;  1L0N E;  4U3F E;  3EQQ A;  3FOU A;  3GCE A;  2E75 D;  4HM8 A;  4NBE A;  1BCC E;  3L74 E;  2XR8 A;  5KLI C;  4P1C H;  1O7M A;  3CX5 E;  3TGU E;  3VMG A;  4NBA D;  2JO6 A;  2HML A;  4HM2 A;  4QDD A;  1G8J B;  2YVJ B;  1BE3 E;  3VCA A;  3C0D A;  3H1L E;  2DE7 A;  3H1H E;  2BCC E;  1PP9 E;  4QDC A;  4QUP A;  4EMJ B;  2QJY C;  2NUK A;  2NVG A;  1O7W A;  1SQB E;  1UUV A;  4NBB A;  3L73 E;  1O7H A;  3VCP A;  4QDF A;  2YFI A;  5AEW A;  4NBH A;  2DE6 A;  2XSH A;  4HKV A;  4HM1 A;  1VM9 A;  4NB9 A;  1RFS A;  2CKF A;  4H44 D;  3GZY A;  5KKZ C;  2Q3W A;  2XSO A;  1Z01 A;  1EZV E;  2YFJ A;  4QDF B;  2HMK A;  1SQV E;  3VMI D;  4QUR A;  1Q90 C;  2YIU C;  4NBC D;  1FQT A;  1NTZ E;  1VF5 D;  4NB8 D;  3VMH A;  2B1X A;  5HL4 A;  1NU1 E;  1VCK A;  2ZYL A;  5AEU A;  2NVF A;  3L71 E;  1KYO E;  3H1K E;  3GTS A;  1Z03 A;  2QJP C;  4HM3 A;  1KB9 E;  3H1J E;  3L72 E;  3GB4 A;  3L75 E;  2NVE A;  4HM7 A;  1SJG A;  4NBA A;  2BMR A;  2HMJ A;  1O7G A;  4NB8 A;  2IBZ E;  2ZT9 D;  4NBD D;  1L0L E;  1RIE A;  2D2C D;  2HMN A;  2JZA A;  3EN1 A;  4OGQ D;  3BCC E;  4NBE D;  4NBF D;  2GBW A;  3L70 E;  1G8K B;  4AAY B;  1WW9 A;  1Z02 A;  1P84 E;  3GCF A;  4HM0 A;  1O7P A;  4H0L D;  4PV1 D;  2I7F A;  2FYN C;  1ULJ A;  4NBG D;  3N0Q A;  3D89 A;  1WQL A;  2BMQ A;  2DE7 D;  2E4Q A;  3DQY A;  4PD4 E;  1NTK E;  3CXH E;  3GZX A;  5CXM A;  5BOK A;  2E74 D;  2QJK C;  1JM1 A;  1UUW A;  2QPZ A;  1EG9 A;  2DE5 D;  3VMI A;  1PPJ E;  2E76 D;  4NBF A;  2XRX A;  4H13 D;  4NBC A;  4NBB D;  1O7N A;  4NBG A;  2A06 E;  3GTE A;  3GL0 A;  2HMM A;  1SQQ E;  3GKE A;  4NBH D;  2DE6 D;  1NTM E;  3H1I E; 
#chains in the Genus database with same CATH homology
 2FYU E;  4NB9 D;  4QUQ A;  4HM5 A;  3GKQ A;  2DE5 A;  1NYK A;  4QCK A;  1NDO A;  4HJL A;  4AIV A;  3VMG D;  2BMO A;  4HM6 A;  4P1B H;  2B24 A;  3AZC A;  1ULI A;  1SQP E;  2YFL A;  2NUM A;  3CWB E;  2HMO A;  3GL2 A;  3VMH D;  4NBD A;  2NWF A;  4HM4 A;  1ZRT E;  3GOB A;  1SQX E;  5KLV E;  2E4P A;  2GBX A;  1L0N E;  4U3F E;  3EQQ A;  3FOU A;  3GCE A;  2E75 D;  4HM8 A;  4NBE A;  1BCC E;  3L74 E;  2XR8 A;  5KLI C;  4P1C H;  1O7M A;  3CX5 E;  3TGU E;  3VMG A;  4NBA D;  2JO6 A;  2HML A;  4HM2 A;  4QDD A;  1G8J B;  2YVJ B;  1BE3 E;  3VCA A;  3C0D A;  3H1L E;  2DE7 A;  3H1H E;  2BCC E;  1PP9 E;  4QDC A;  4QUP A;  4EMJ B;  2QJY C;  2NUK A;  2NVG A;  1O7W A;  1SQB E;  1UUV A;  4NBB A;  3L73 E;  1O7H A;  3VCP A;  4QDF A;  2YFI A;  5AEW A;  4NBH A;  2DE6 A;  2XSH A;  4HKV A;  4HM1 A;  1VM9 A;  4NB9 A;  1RFS A;  2CKF A;  4H44 D;  3GZY A;  5KKZ C;  2Q3W A;  2XSO A;  1Z01 A;  1EZV E;  2YFJ A;  4QDF B;  2HMK A;  1SQV E;  3VMI D;  4QUR A;  1Q90 C;  2YIU C;  4NBC D;  1FQT A;  1NTZ E;  1VF5 D;  4NB8 D;  3VMH A;  2B1X A;  5HL4 A;  1NU1 E;  1VCK A;  2ZYL A;  5AEU A;  2NVF A;  3L71 E;  1KYO E;  3H1K E;  3GTS A;  1Z03 A;  2QJP C;  4HM3 A;  1KB9 E;  3H1J E;  3L72 E;  3GB4 A;  3L75 E;  2NVE A;  4HM7 A;  1SJG A;  4NBA A;  2BMR A;  2HMJ A;  1O7G A;  4NB8 A;  2IBZ E;  2ZT9 D;  4NBD D;  1L0L E;  1RIE A;  2D2C D;  2HMN A;  2JZA A;  3EN1 A;  4OGQ D;  3BCC E;  4NBE D;  4NBF D;  2GBW A;  3L70 E;  1G8K B;  4AAY B;  1WW9 A;  1Z02 A;  1P84 E;  3GCF A;  4HM0 A;  1O7P A;  4H0L D;  4PV1 D;  2I7F A;  2FYN C;  1ULJ A;  4NBG D;  3N0Q A;  3D89 A;  1WQL A;  2BMQ A;  2DE7 D;  2E4Q A;  3DQY A;  4PD4 E;  1NTK E;  3CXH E;  3GZX A;  5CXM A;  5BOK A;  2E74 D;  2QJK C;  1JM1 A;  1UUW A;  2QPZ A;  1EG9 A;  2DE5 D;  3VMI A;  1PPJ E;  2E76 D;  4NBF A;  2XRX A;  4H13 D;  4NBC A;  4NBB D;  1O7N A;  4NBG A;  2A06 E;  3GTE A;  3GL0 A;  2HMM A;  1SQQ E;  3GKE A;  4NBH D;  2DE6 D;  1NTM E;  3H1I E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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