1UUWA

Naphthalene 1,2-dioxygenase with nitric oxide bound in the active site.
Total Genus 159
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
447
structure length
447
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title No Binding to Naphthalene Dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 159
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2004-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1uuwA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1uuwA01
4HM2A 3GTEA 2D2CD 3VMGD 4HJLA 2DE6A 5CXMA 2YFJA 1O7PA 4QCKA 5KKZC 4PD4E 4NBGD 2IBZE 1PPJE 1SQBE 4NBDA 1ULJA 3GB4A 1NU1E 5KLIC 4HM8A 1O7MA 1SQQE 2XSOA 4NBFD 3L73E 4HM0A 4QDFA 3L70E 2QJYC 1SJGA 4NBBA 2BMOA 1ZRTE 3H1IE 4P1CH 2YVJB 4HKVA 2DE5A 1O7WA 2QPZA 2DE7D 1KB9E 5AEUA 4NB9A 4NBAA 3GL2A 2GBXA 2NUMA 2XRXA 3TGUE 3C0DA 2ZT9D 1NTKE 1VM9A 2GBWA 1G8KB 4NBCA 4QDDA 3H1KE 2CKFA 4H0LD 3VCPA 4NBEA 3EN1A 3VMIA 4HM1A 3VCAA 2FYUE 2A06E 1RIEA 2HMNA 3GOBA 3GKQA 3DQYA 5AEWA 2E4QA 2HMOA 3H1JE 4NBHA 2BCCE 4PV1D 4EMJB 4HM6A 2I7FA 2NVGA 1WQLA 4OGQD 2NVFA 3VMHD 2YFLA 2E74D 4P1BH 1SQXE 1O7HA 1RFSA 3CXHE 1P84E 4NB8D 1BCCE 4HM4A 3CWBE 3GKEA 2BMQA 4U3FE 2FYNC 1PP9E 1Z03A 3VMGA 4HM3A 4AIVA 2DE6D 2E4PA 4QDFB 3L72E 1SQPE 1NDOA 3AZCA 3L75E 4NBGA 1FQTA 1G8JB 5BOKA 3L74E 1Q90C 1VF5D 4NBDD 2QJKC 4H13D 1NYKA 1JM1A 1NTME 1L0LE 2XR8A 2NVEA 2HMMA 4NBFA 2HMJA 1WW9A 3D89A 2BMRA 3H1LE 2JZAA 2JO6A 3CX5E 4H44D 3FOUA 4NBBD 2B24A 1UUWA 3GTSA 4QDCA 2QJPC 1O7GA 2NWFA 2DE5D 2DE7A 4NB9D 1ULIA 4NBAD 4QUQA 5HL4A 1Z01A 3GZYA 1EG9A 1SQVE 2XSHA 2E76D 5KLVE 1Z02A 3EQQA 3GL0A 2E75D 1EZVE 4NBED 3GZXA 3BCCE 1UUVA 3VMID 1O7NA 3H1HE 2HMLA 1NTZE 2YFIA 2ZYLA 4QURA 4HM7A 1L0NE 4NBHD 1KYOE 2B1XA 3N0QA 4HM5A 3GCEA 1VCKA 1BE3E 4NBCD 4QUPA 3VMHA 2NUKA 2Q3WA 3GCFA 2YIUC 4NB8A 4AAYB 2HMKA 3L71E
chains in the Genus database with same CATH superfamily
4HM2A 3GTEA 2D2CD 3VMGD 4HJLA 2DE6A 5CXMA 2YFJA 1O7PA 4QCKA 5KKZC 4PD4E 4NBGD 2IBZE 1PPJE 1SQBE 4NBDA 1ULJA 3GB4A 1NU1E 5KLIC 4HM8A 1O7MA 1SQQE 2XSOA 4NBFD 3L73E 4HM0A 4QDFA 3L70E 2QJYC 1SJGA 4NBBA 2BMOA 1ZRTE 3H1IE 4P1CH 2YVJB 4HKVA 2DE5A 1O7WA 2QPZA 2DE7D 1KB9E 5AEUA 4NB9A 4NBAA 3GL2A 2GBXA 2NUMA 2XRXA 3TGUE 3C0DA 2ZT9D 1NTKE 1VM9A 2GBWA 1G8KB 4NBCA 4QDDA 3H1KE 2CKFA 4H0LD 3VCPA 4NBEA 3EN1A 3VMIA 4HM1A 3VCAA 2FYUE 2A06E 1RIEA 2HMNA 3GOBA 3GKQA 3DQYA 5AEWA 2E4QA 2HMOA 3H1JE 4NBHA 2BCCE 4PV1D 4EMJB 4HM6A 2I7FA 2NVGA 1WQLA 4OGQD 2NVFA 3VMHD 2YFLA 2E74D 4P1BH 1SQXE 1O7HA 1RFSA 3CXHE 1P84E 4NB8D 1BCCE 4HM4A 3CWBE 3GKEA 2BMQA 4U3FE 2FYNC 1PP9E 1Z03A 3VMGA 4HM3A 4AIVA 2DE6D 2E4PA 4QDFB 3L72E 1SQPE 1NDOA 3AZCA 3L75E 4NBGA 1FQTA 1G8JB 5BOKA 3L74E 1Q90C 1VF5D 4NBDD 2QJKC 4H13D 1NYKA 1JM1A 1NTME 1L0LE 2XR8A 2NVEA 2HMMA 4NBFA 2HMJA 1WW9A 3D89A 2BMRA 3H1LE 2JZAA 2JO6A 3CX5E 4H44D 3FOUA 4NBBD 2B24A 1UUWA 3GTSA 4QDCA 2QJPC 1O7GA 2NWFA 2DE5D 2DE7A 4NB9D 1ULIA 4NBAD 4QUQA 5HL4A 1Z01A 3GZYA 1EG9A 1SQVE 2XSHA 2E76D 5KLVE 1Z02A 3EQQA 3GL0A 2E75D 1EZVE 4NBED 3GZXA 3BCCE 1UUVA 3VMID 1O7NA 3H1HE 2HMLA 1NTZE 2YFIA 2ZYLA 4QURA 4HM7A 1L0NE 4NBHD 1KYOE 2B1XA 3N0QA 4HM5A 3GCEA 1VCKA 1BE3E 4NBCD 4QUPA 3VMHA 2NUKA 2Q3WA 3GCFA 2YIUC 4NB8A 4AAYB 2HMKA 3L71E
chains in the Genus database with same CATH topology
4HM2A 3GTEA 2D2CD 3VMGD 4HJLA 2DE6A 5CXMA 2YFJA 1O7PA 4QCKA 5KKZC 4PD4E 4NBGD 2IBZE 1PPJE 1SQBE 4NBDA 1ULJA 3GB4A 1NU1E 5KLIC 4HM8A 1O7MA 1SQQE 2XSOA 4NBFD 3L73E 4HM0A 4QDFA 3L70E 2QJYC 1SJGA 4NBBA 2BMOA 1ZRTE 3H1IE 4P1CH 2YVJB 4HKVA 2DE5A 1O7WA 2QPZA 2DE7D 1KB9E 5AEUA 4NB9A 4NBAA 3GL2A 2GBXA 2NUMA 2XRXA 3TGUE 3C0DA 2ZT9D 1NTKE 1VM9A 2GBWA 1G8KB 4NBCA 4QDDA 3H1KE 2CKFA 4H0LD 3VCPA 4NBEA 3EN1A 3VMIA 4HM1A 3VCAA 2FYUE 2A06E 1RIEA 2HMNA 3GOBA 3GKQA 3DQYA 5AEWA 2E4QA 2HMOA 3H1JE 4NBHA 2BCCE 4PV1D 4EMJB 4HM6A 2I7FA 2NVGA 1WQLA 4OGQD 2NVFA 3VMHD 2YFLA 2E74D 4P1BH 1SQXE 1O7HA 1RFSA 3CXHE 1P84E 4NB8D 1BCCE 4HM4A 3CWBE 3GKEA 2BMQA 4U3FE 2FYNC 1PP9E 1Z03A 3VMGA 4HM3A 4AIVA 2DE6D 2E4PA 4QDFB 3L72E 1SQPE 1NDOA 3AZCA 3L75E 4NBGA 1FQTA 1G8JB 5BOKA 3L74E 1Q90C 1VF5D 4NBDD 2QJKC 4H13D 1NYKA 1JM1A 1NTME 1L0LE 2XR8A 2NVEA 2HMMA 4NBFA 2HMJA 1WW9A 3D89A 2BMRA 3H1LE 2JZAA 2JO6A 3CX5E 4H44D 3FOUA 4NBBD 2B24A 1UUWA 3GTSA 4QDCA 2QJPC 1O7GA 2NWFA 2DE5D 2DE7A 4NB9D 1ULIA 4NBAD 4QUQA 5HL4A 1Z01A 3GZYA 1EG9A 1SQVE 2XSHA 2E76D 5KLVE 1Z02A 3EQQA 3GL0A 2E75D 1EZVE 4NBED 3GZXA 3BCCE 1UUVA 3VMID 1O7NA 3H1HE 2HMLA 1NTZE 2YFIA 2ZYLA 4QURA 4HM7A 1L0NE 4NBHD 1KYOE 2B1XA 3N0QA 4HM5A 3GCEA 1VCKA 1BE3E 4NBCD 4QUPA 3VMHA 2NUKA 2Q3WA 3GCFA 2YIUC 4NB8A 4AAYB 2HMKA 3L71E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HM2 A;  3GTE A;  2D2C D;  3VMG D;  4HJL A;  2DE6 A;  5CXM A;  2YFJ A;  1O7P A;  4QCK A;  5KKZ C;  4PD4 E;  4NBG D;  2IBZ E;  1PPJ E;  1SQB E;  4NBD A;  1ULJ A;  3GB4 A;  1NU1 E;  5KLI C;  4HM8 A;  1O7M A;  1SQQ E;  2XSO A;  4NBF D;  3L73 E;  4HM0 A;  4QDF A;  3L70 E;  2QJY C;  1SJG A;  4NBB A;  2BMO A;  1ZRT E;  3H1I E;  4P1C H;  2YVJ B;  4HKV A;  2DE5 A;  1O7W A;  2QPZ A;  2DE7 D;  1KB9 E;  5AEU A;  4NB9 A;  4NBA A;  3GL2 A;  2GBX A;  2NUM A;  2XRX A;  3TGU E;  3C0D A;  2ZT9 D;  1NTK E;  1VM9 A;  2GBW A;  1G8K B;  4NBC A;  4QDD A;  3H1K E;  2CKF A;  4H0L D;  3VCP A;  4NBE A;  3EN1 A;  3VMI A;  4HM1 A;  3VCA A;  2FYU E;  2A06 E;  1RIE A;  2HMN A;  3GOB A;  3GKQ A;  3DQY A;  5AEW A;  2E4Q A;  2HMO A;  3H1J E;  4NBH A;  2BCC E;  4PV1 D;  4EMJ B;  4HM6 A;  2I7F A;  2NVG A;  1WQL A;  4OGQ D;  2NVF A;  3VMH D;  2YFL A;  2E74 D;  4P1B H;  1SQX E;  1O7H A;  1RFS A;  3CXH E;  1P84 E;  4NB8 D;  1BCC E;  4HM4 A;  3CWB E;  3GKE A;  2BMQ A;  4U3F E;  2FYN C;  1PP9 E;  1Z03 A;  3VMG A;  4HM3 A;  4AIV A;  2DE6 D;  2E4P A;  4QDF B;  3L72 E;  1SQP E;  1NDO A;  3AZC A;  3L75 E;  4NBG A;  1FQT A;  1G8J B;  5BOK A;  3L74 E;  1Q90 C;  1VF5 D;  4NBD D;  2QJK C;  4H13 D;  1NYK A;  1JM1 A;  1NTM E;  1L0L E;  2XR8 A;  2NVE A;  2HMM A;  4NBF A;  2HMJ A;  1WW9 A;  3D89 A;  2BMR A;  3H1L E;  2JZA A;  2JO6 A;  3CX5 E;  4H44 D;  3FOU A;  4NBB D;  2B24 A;  1UUW A;  3GTS A;  4QDC A;  2QJP C;  1O7G A;  2NWF A;  2DE5 D;  2DE7 A;  4NB9 D;  1ULI A;  4NBA D;  4QUQ A;  5HL4 A;  1Z01 A;  3GZY A;  1EG9 A;  1SQV E;  2XSH A;  2E76 D;  5KLV E;  1Z02 A;  3EQQ A;  3GL0 A;  2E75 D;  1EZV E;  4NBE D;  3GZX A;  3BCC E;  1UUV A;  3VMI D;  1O7N A;  3H1H E;  2HML A;  1NTZ E;  2YFI A;  2ZYL A;  4QUR A;  4HM7 A;  1L0N E;  4NBH D;  1KYO E;  2B1X A;  3N0Q A;  4HM5 A;  3GCE A;  1VCK A;  1BE3 E;  4NBC D;  4QUP A;  3VMH A;  2NUK A;  2Q3W A;  3GCF A;  2YIU C;  4NB8 A;  4AAY B;  2HMK A;  3L71 E; 
#chains in the Genus database with same CATH topology
 4HM2 A;  3GTE A;  2D2C D;  3VMG D;  4HJL A;  2DE6 A;  5CXM A;  2YFJ A;  1O7P A;  4QCK A;  5KKZ C;  4PD4 E;  4NBG D;  2IBZ E;  1PPJ E;  1SQB E;  4NBD A;  1ULJ A;  3GB4 A;  1NU1 E;  5KLI C;  4HM8 A;  1O7M A;  1SQQ E;  2XSO A;  4NBF D;  3L73 E;  4HM0 A;  4QDF A;  3L70 E;  2QJY C;  1SJG A;  4NBB A;  2BMO A;  1ZRT E;  3H1I E;  4P1C H;  2YVJ B;  4HKV A;  2DE5 A;  1O7W A;  2QPZ A;  2DE7 D;  1KB9 E;  5AEU A;  4NB9 A;  4NBA A;  3GL2 A;  2GBX A;  2NUM A;  2XRX A;  3TGU E;  3C0D A;  2ZT9 D;  1NTK E;  1VM9 A;  2GBW A;  1G8K B;  4NBC A;  4QDD A;  3H1K E;  2CKF A;  4H0L D;  3VCP A;  4NBE A;  3EN1 A;  3VMI A;  4HM1 A;  3VCA A;  2FYU E;  2A06 E;  1RIE A;  2HMN A;  3GOB A;  3GKQ A;  3DQY A;  5AEW A;  2E4Q A;  2HMO A;  3H1J E;  4NBH A;  2BCC E;  4PV1 D;  4EMJ B;  4HM6 A;  2I7F A;  2NVG A;  1WQL A;  4OGQ D;  2NVF A;  3VMH D;  2YFL A;  2E74 D;  4P1B H;  1SQX E;  1O7H A;  1RFS A;  3CXH E;  1P84 E;  4NB8 D;  1BCC E;  4HM4 A;  3CWB E;  3GKE A;  2BMQ A;  4U3F E;  2FYN C;  1PP9 E;  1Z03 A;  3VMG A;  4HM3 A;  4AIV A;  2DE6 D;  2E4P A;  4QDF B;  3L72 E;  1SQP E;  1NDO A;  3AZC A;  3L75 E;  4NBG A;  1FQT A;  1G8J B;  5BOK A;  3L74 E;  1Q90 C;  1VF5 D;  4NBD D;  2QJK C;  4H13 D;  1NYK A;  1JM1 A;  1NTM E;  1L0L E;  2XR8 A;  2NVE A;  2HMM A;  4NBF A;  2HMJ A;  1WW9 A;  3D89 A;  2BMR A;  3H1L E;  2JZA A;  2JO6 A;  3CX5 E;  4H44 D;  3FOU A;  4NBB D;  2B24 A;  1UUW A;  3GTS A;  4QDC A;  2QJP C;  1O7G A;  2NWF A;  2DE5 D;  2DE7 A;  4NB9 D;  1ULI A;  4NBA D;  4QUQ A;  5HL4 A;  1Z01 A;  3GZY A;  1EG9 A;  1SQV E;  2XSH A;  2E76 D;  5KLV E;  1Z02 A;  3EQQ A;  3GL0 A;  2E75 D;  1EZV E;  4NBE D;  3GZX A;  3BCC E;  1UUV A;  3VMI D;  1O7N A;  3H1H E;  2HML A;  1NTZ E;  2YFI A;  2ZYL A;  4QUR A;  4HM7 A;  1L0N E;  4NBH D;  1KYO E;  2B1X A;  3N0Q A;  4HM5 A;  3GCE A;  1VCK A;  1BE3 E;  4NBC D;  4QUP A;  3VMH A;  2NUK A;  2Q3W A;  3GCF A;  2YIU C;  4NB8 A;  4AAY B;  2HMK A;  3L71 E; 
#chains in the Genus database with same CATH homology
 4HM2 A;  3GTE A;  2D2C D;  3VMG D;  4HJL A;  2DE6 A;  5CXM A;  2YFJ A;  1O7P A;  4QCK A;  5KKZ C;  4PD4 E;  4NBG D;  2IBZ E;  1PPJ E;  1SQB E;  4NBD A;  1ULJ A;  3GB4 A;  1NU1 E;  5KLI C;  4HM8 A;  1O7M A;  1SQQ E;  2XSO A;  4NBF D;  3L73 E;  4HM0 A;  4QDF A;  3L70 E;  2QJY C;  1SJG A;  4NBB A;  2BMO A;  1ZRT E;  3H1I E;  4P1C H;  2YVJ B;  4HKV A;  2DE5 A;  1O7W A;  2QPZ A;  2DE7 D;  1KB9 E;  5AEU A;  4NB9 A;  4NBA A;  3GL2 A;  2GBX A;  2NUM A;  2XRX A;  3TGU E;  3C0D A;  2ZT9 D;  1NTK E;  1VM9 A;  2GBW A;  1G8K B;  4NBC A;  4QDD A;  3H1K E;  2CKF A;  4H0L D;  3VCP A;  4NBE A;  3EN1 A;  3VMI A;  4HM1 A;  3VCA A;  2FYU E;  2A06 E;  1RIE A;  2HMN A;  3GOB A;  3GKQ A;  3DQY A;  5AEW A;  2E4Q A;  2HMO A;  3H1J E;  4NBH A;  2BCC E;  4PV1 D;  4EMJ B;  4HM6 A;  2I7F A;  2NVG A;  1WQL A;  4OGQ D;  2NVF A;  3VMH D;  2YFL A;  2E74 D;  4P1B H;  1SQX E;  1O7H A;  1RFS A;  3CXH E;  1P84 E;  4NB8 D;  1BCC E;  4HM4 A;  3CWB E;  3GKE A;  2BMQ A;  4U3F E;  2FYN C;  1PP9 E;  1Z03 A;  3VMG A;  4HM3 A;  4AIV A;  2DE6 D;  2E4P A;  4QDF B;  3L72 E;  1SQP E;  1NDO A;  3AZC A;  3L75 E;  4NBG A;  1FQT A;  1G8J B;  5BOK A;  3L74 E;  1Q90 C;  1VF5 D;  4NBD D;  2QJK C;  4H13 D;  1NYK A;  1JM1 A;  1NTM E;  1L0L E;  2XR8 A;  2NVE A;  2HMM A;  4NBF A;  2HMJ A;  1WW9 A;  3D89 A;  2BMR A;  3H1L E;  2JZA A;  2JO6 A;  3CX5 E;  4H44 D;  3FOU A;  4NBB D;  2B24 A;  1UUW A;  3GTS A;  4QDC A;  2QJP C;  1O7G A;  2NWF A;  2DE5 D;  2DE7 A;  4NB9 D;  1ULI A;  4NBA D;  4QUQ A;  5HL4 A;  1Z01 A;  3GZY A;  1EG9 A;  1SQV E;  2XSH A;  2E76 D;  5KLV E;  1Z02 A;  3EQQ A;  3GL0 A;  2E75 D;  1EZV E;  4NBE D;  3GZX A;  3BCC E;  1UUV A;  3VMI D;  1O7N A;  3H1H E;  2HML A;  1NTZ E;  2YFI A;  2ZYL A;  4QUR A;  4HM7 A;  1L0N E;  4NBH D;  1KYO E;  2B1X A;  3N0Q A;  4HM5 A;  3GCE A;  1VCK A;  1BE3 E;  4NBC D;  4QUP A;  3VMH A;  2NUK A;  2Q3W A;  3GCF A;  2YIU C;  4NB8 A;  4AAY B;  2HMK A;  3L71 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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