1UUWA

Naphthalene 1,2-dioxygenase with nitric oxide bound in the active site.
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Pseudomonas putida
publication title No Binding to Naphthalene Dioxygenase.
pubmed doi rcsb
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
total genus 159
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2004-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1uuwA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1uuwA01
1SJGA 1O7GA 4HM2A 3VMGD 4NBAA 3VMIA 4HJLA 2E4QA 4NB9A 4NBAD 2XR8A 3VMID 3DQYA 4QCKA 3GZXA 2NUKA 1O7PA 4NBCD 4HM6A 4NB9D 4P1BH 2HMOA 1NTME 5KLVE 1Z02A 2ZT9D 1EZVE 4QDDA 4HM1A 4AIVA 3H1HE 2Q3WA 1O7HA 3L75E 1Z01A 2DE6A 4HM4A 3H1JE 1BE3E 2D2CD 2GBXA 3D89A 4NBFA 1VCKA 3C0DA 3L71E 2JO6A 2ZYLA 2XSHA 3GKEA 4QDCA 3CWBE 2DE6D 4NB8A 4NBFD 1JM1A 2IBZE 1PP9E 2QJPC 3GCFA 1VF5D 4H44D 4HM3A 2E76D 5KKZC 1G8JB 3GB4A 4NBGA 1NTZE 3H1LE 4QUPA 4NBDA 1NDOA 2HMLA 4U3FE 3GTSA 1WW9A 1BCCE 3GL2A 4NBBA 2YIUC 3GKQA 2FYNC 4NBDD 2DE7A 4QDFB 3GL0A 2BMRA 2QPZA 3FOUA 3L72E 4HKVA 4P1CH 1SQBE 3AZCA 3GZYA 4NBBD 1O7NA 4AAYB 4QURA 2QJKC 4QDFA 4EMJB 1ZRTE 1ULJA 2HMNA 2YVJB 3CX5E 2CKFA 5HL4A 1RIEA 1O7WA 5AEWA 4PV1D 2I7FA 2YFJA 3GTEA 1SQXE 3EQQA 1NYKA 2HMMA 4HM0A 2HMJA 1Q90C 4NB8D 2YFIA 1KYOE 4OGQD 2NVGA 5CXMA 2E75D 2NUMA 1PPJE 3H1KE 2B24A 3GCEA 4HM8A 2NWFA 5BOKA 2BMOA 4HM7A 4NBGD 1NU1E 2HMKA 1SQVE 2E74D 2YFLA 3VMGA 1VM9A 2XRXA 2BMQA 3EN1A 3CXHE 2QJYC 2DE5A 2NVFA 1SQQE 4H13D 4NBHA 2DE7D 4HM5A 3L74E 2A06E 2JZAA 1RFSA 3L73E 3L70E 2E4PA 4PD4E 1G8KB 1Z03A 3VMHA 4NBCA 2FYUE 1SQPE 2DE5D 4NBHD 1UUVA 1KB9E 1FQTA 1L0NE 4NBEA 3H1IE 3VCPA 1WQLA 1P84E 3BCCE 3VMHD 3TGUE 1O7MA 4QUQA 1L0LE 1ULIA 1UUWA 3VCAA 2GBWA 3N0QA 4NBED 5KLIC 1EG9A 1NTKE 2BCCE 4H0LD 2NVEA 5AEUA 2XSOA 3GOBA 2B1XA
chains in the Genus database with same CATH superfamily
1SJGA 1O7GA 4HM2A 3VMGD 4NBAA 3VMIA 4HJLA 2E4QA 4NB9A 4NBAD 2XR8A 3VMID 3DQYA 4QCKA 3GZXA 2NUKA 1O7PA 4NBCD 4HM6A 4NB9D 4P1BH 2HMOA 1NTME 5KLVE 1Z02A 2ZT9D 1EZVE 4QDDA 4HM1A 4AIVA 3H1HE 2Q3WA 1O7HA 3L75E 1Z01A 2DE6A 4HM4A 3H1JE 1BE3E 2D2CD 2GBXA 3D89A 4NBFA 1VCKA 3C0DA 3L71E 2JO6A 2ZYLA 2XSHA 3GKEA 4QDCA 3CWBE 2DE6D 4NB8A 4NBFD 1JM1A 2IBZE 1PP9E 2QJPC 3GCFA 1VF5D 4H44D 4HM3A 2E76D 5KKZC 1G8JB 3GB4A 4NBGA 1NTZE 3H1LE 4QUPA 4NBDA 1NDOA 2HMLA 4U3FE 3GTSA 1WW9A 1BCCE 3GL2A 4NBBA 2YIUC 3GKQA 2FYNC 4NBDD 2DE7A 4QDFB 3GL0A 2BMRA 2QPZA 3FOUA 3L72E 4HKVA 4P1CH 1SQBE 3AZCA 3GZYA 4NBBD 1O7NA 4AAYB 4QURA 2QJKC 4QDFA 4EMJB 1ZRTE 1ULJA 2HMNA 2YVJB 3CX5E 2CKFA 5HL4A 1RIEA 1O7WA 5AEWA 4PV1D 2I7FA 2YFJA 3GTEA 1SQXE 3EQQA 1NYKA 2HMMA 4HM0A 2HMJA 1Q90C 4NB8D 2YFIA 1KYOE 4OGQD 2NVGA 5CXMA 2E75D 2NUMA 1PPJE 3H1KE 2B24A 3GCEA 4HM8A 2NWFA 5BOKA 2BMOA 4HM7A 4NBGD 1NU1E 2HMKA 1SQVE 2E74D 2YFLA 3VMGA 1VM9A 2XRXA 2BMQA 3EN1A 3CXHE 2QJYC 2DE5A 2NVFA 1SQQE 4H13D 4NBHA 2DE7D 4HM5A 3L74E 2A06E 2JZAA 1RFSA 3L73E 3L70E 2E4PA 4PD4E 1G8KB 1Z03A 3VMHA 4NBCA 2FYUE 1SQPE 2DE5D 4NBHD 1UUVA 1KB9E 1FQTA 1L0NE 4NBEA 3H1IE 3VCPA 1WQLA 1P84E 3BCCE 3VMHD 3TGUE 1O7MA 4QUQA 1L0LE 1ULIA 1UUWA 3VCAA 2GBWA 3N0QA 4NBED 5KLIC 1EG9A 1NTKE 2BCCE 4H0LD 2NVEA 5AEUA 2XSOA 3GOBA 2B1XA
chains in the Genus database with same CATH topology
1SJGA 1O7GA 4HM2A 3VMGD 4NBAA 3VMIA 4HJLA 2E4QA 4NB9A 4NBAD 2XR8A 3VMID 3DQYA 4QCKA 3GZXA 2NUKA 1O7PA 4NBCD 4HM6A 4NB9D 4P1BH 2HMOA 1NTME 5KLVE 1Z02A 2ZT9D 1EZVE 4QDDA 4HM1A 4AIVA 3H1HE 2Q3WA 1O7HA 3L75E 1Z01A 2DE6A 4HM4A 3H1JE 1BE3E 2D2CD 2GBXA 3D89A 4NBFA 1VCKA 3C0DA 3L71E 2JO6A 2ZYLA 2XSHA 3GKEA 4QDCA 3CWBE 2DE6D 4NB8A 4NBFD 1JM1A 2IBZE 1PP9E 2QJPC 3GCFA 1VF5D 4H44D 4HM3A 2E76D 5KKZC 1G8JB 3GB4A 4NBGA 1NTZE 3H1LE 4QUPA 4NBDA 1NDOA 2HMLA 4U3FE 3GTSA 1WW9A 1BCCE 3GL2A 4NBBA 2YIUC 3GKQA 2FYNC 4NBDD 2DE7A 4QDFB 3GL0A 2BMRA 2QPZA 3FOUA 3L72E 4HKVA 4P1CH 1SQBE 3AZCA 3GZYA 4NBBD 1O7NA 4AAYB 4QURA 2QJKC 4QDFA 4EMJB 1ZRTE 1ULJA 2HMNA 2YVJB 3CX5E 2CKFA 5HL4A 1RIEA 1O7WA 5AEWA 4PV1D 2I7FA 2YFJA 3GTEA 1SQXE 3EQQA 1NYKA 2HMMA 4HM0A 2HMJA 1Q90C 4NB8D 2YFIA 1KYOE 4OGQD 2NVGA 5CXMA 2E75D 2NUMA 1PPJE 3H1KE 2B24A 3GCEA 4HM8A 2NWFA 5BOKA 2BMOA 4HM7A 4NBGD 1NU1E 2HMKA 1SQVE 2E74D 2YFLA 3VMGA 1VM9A 2XRXA 2BMQA 3EN1A 3CXHE 2QJYC 2DE5A 2NVFA 1SQQE 4H13D 4NBHA 2DE7D 4HM5A 3L74E 2A06E 2JZAA 1RFSA 3L73E 3L70E 2E4PA 4PD4E 1G8KB 1Z03A 3VMHA 4NBCA 2FYUE 1SQPE 2DE5D 4NBHD 1UUVA 1KB9E 1FQTA 1L0NE 4NBEA 3H1IE 3VCPA 1WQLA 1P84E 3BCCE 3VMHD 3TGUE 1O7MA 4QUQA 1L0LE 1ULIA 1UUWA 3VCAA 2GBWA 3N0QA 4NBED 5KLIC 1EG9A 1NTKE 2BCCE 4H0LD 2NVEA 5AEUA 2XSOA 3GOBA 2B1XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SJG A;  1O7G A;  4HM2 A;  3VMG D;  4NBA A;  3VMI A;  4HJL A;  2E4Q A;  4NB9 A;  4NBA D;  2XR8 A;  3VMI D;  3DQY A;  4QCK A;  3GZX A;  2NUK A;  1O7P A;  4NBC D;  4HM6 A;  4NB9 D;  4P1B H;  2HMO A;  1NTM E;  5KLV E;  1Z02 A;  2ZT9 D;  1EZV E;  4QDD A;  4HM1 A;  4AIV A;  3H1H E;  2Q3W A;  1O7H A;  3L75 E;  1Z01 A;  2DE6 A;  4HM4 A;  3H1J E;  1BE3 E;  2D2C D;  2GBX A;  3D89 A;  4NBF A;  1VCK A;  3C0D A;  3L71 E;  2JO6 A;  2ZYL A;  2XSH A;  3GKE A;  4QDC A;  3CWB E;  2DE6 D;  4NB8 A;  4NBF D;  1JM1 A;  2IBZ E;  1PP9 E;  2QJP C;  3GCF A;  1VF5 D;  4H44 D;  4HM3 A;  2E76 D;  5KKZ C;  1G8J B;  3GB4 A;  4NBG A;  1NTZ E;  3H1L E;  4QUP A;  4NBD A;  1NDO A;  2HML A;  4U3F E;  3GTS A;  1WW9 A;  1BCC E;  3GL2 A;  4NBB A;  2YIU C;  3GKQ A;  2FYN C;  4NBD D;  2DE7 A;  4QDF B;  3GL0 A;  2BMR A;  2QPZ A;  3FOU A;  3L72 E;  4HKV A;  4P1C H;  1SQB E;  3AZC A;  3GZY A;  4NBB D;  1O7N A;  4AAY B;  4QUR A;  2QJK C;  4QDF A;  4EMJ B;  1ZRT E;  1ULJ A;  2HMN A;  2YVJ B;  3CX5 E;  2CKF A;  5HL4 A;  1RIE A;  1O7W A;  5AEW A;  4PV1 D;  2I7F A;  2YFJ A;  3GTE A;  1SQX E;  3EQQ A;  1NYK A;  2HMM A;  4HM0 A;  2HMJ A;  1Q90 C;  4NB8 D;  2YFI A;  1KYO E;  4OGQ D;  2NVG A;  5CXM A;  2E75 D;  2NUM A;  1PPJ E;  3H1K E;  2B24 A;  3GCE A;  4HM8 A;  2NWF A;  5BOK A;  2BMO A;  4HM7 A;  4NBG D;  1NU1 E;  2HMK A;  1SQV E;  2E74 D;  2YFL A;  3VMG A;  1VM9 A;  2XRX A;  2BMQ A;  3EN1 A;  3CXH E;  2QJY C;  2DE5 A;  2NVF A;  1SQQ E;  4H13 D;  4NBH A;  2DE7 D;  4HM5 A;  3L74 E;  2A06 E;  2JZA A;  1RFS A;  3L73 E;  3L70 E;  2E4P A;  4PD4 E;  1G8K B;  1Z03 A;  3VMH A;  4NBC A;  2FYU E;  1SQP E;  2DE5 D;  4NBH D;  1UUV A;  1KB9 E;  1FQT A;  1L0N E;  4NBE A;  3H1I E;  3VCP A;  1WQL A;  1P84 E;  3BCC E;  3VMH D;  3TGU E;  1O7M A;  4QUQ A;  1L0L E;  1ULI A;  1UUW A;  3VCA A;  2GBW A;  3N0Q A;  4NBE D;  5KLI C;  1EG9 A;  1NTK E;  2BCC E;  4H0L D;  2NVE A;  5AEU A;  2XSO A;  3GOB A;  2B1X A; 
#chains in the Genus database with same CATH topology
 1SJG A;  1O7G A;  4HM2 A;  3VMG D;  4NBA A;  3VMI A;  4HJL A;  2E4Q A;  4NB9 A;  4NBA D;  2XR8 A;  3VMI D;  3DQY A;  4QCK A;  3GZX A;  2NUK A;  1O7P A;  4NBC D;  4HM6 A;  4NB9 D;  4P1B H;  2HMO A;  1NTM E;  5KLV E;  1Z02 A;  2ZT9 D;  1EZV E;  4QDD A;  4HM1 A;  4AIV A;  3H1H E;  2Q3W A;  1O7H A;  3L75 E;  1Z01 A;  2DE6 A;  4HM4 A;  3H1J E;  1BE3 E;  2D2C D;  2GBX A;  3D89 A;  4NBF A;  1VCK A;  3C0D A;  3L71 E;  2JO6 A;  2ZYL A;  2XSH A;  3GKE A;  4QDC A;  3CWB E;  2DE6 D;  4NB8 A;  4NBF D;  1JM1 A;  2IBZ E;  1PP9 E;  2QJP C;  3GCF A;  1VF5 D;  4H44 D;  4HM3 A;  2E76 D;  5KKZ C;  1G8J B;  3GB4 A;  4NBG A;  1NTZ E;  3H1L E;  4QUP A;  4NBD A;  1NDO A;  2HML A;  4U3F E;  3GTS A;  1WW9 A;  1BCC E;  3GL2 A;  4NBB A;  2YIU C;  3GKQ A;  2FYN C;  4NBD D;  2DE7 A;  4QDF B;  3GL0 A;  2BMR A;  2QPZ A;  3FOU A;  3L72 E;  4HKV A;  4P1C H;  1SQB E;  3AZC A;  3GZY A;  4NBB D;  1O7N A;  4AAY B;  4QUR A;  2QJK C;  4QDF A;  4EMJ B;  1ZRT E;  1ULJ A;  2HMN A;  2YVJ B;  3CX5 E;  2CKF A;  5HL4 A;  1RIE A;  1O7W A;  5AEW A;  4PV1 D;  2I7F A;  2YFJ A;  3GTE A;  1SQX E;  3EQQ A;  1NYK A;  2HMM A;  4HM0 A;  2HMJ A;  1Q90 C;  4NB8 D;  2YFI A;  1KYO E;  4OGQ D;  2NVG A;  5CXM A;  2E75 D;  2NUM A;  1PPJ E;  3H1K E;  2B24 A;  3GCE A;  4HM8 A;  2NWF A;  5BOK A;  2BMO A;  4HM7 A;  4NBG D;  1NU1 E;  2HMK A;  1SQV E;  2E74 D;  2YFL A;  3VMG A;  1VM9 A;  2XRX A;  2BMQ A;  3EN1 A;  3CXH E;  2QJY C;  2DE5 A;  2NVF A;  1SQQ E;  4H13 D;  4NBH A;  2DE7 D;  4HM5 A;  3L74 E;  2A06 E;  2JZA A;  1RFS A;  3L73 E;  3L70 E;  2E4P A;  4PD4 E;  1G8K B;  1Z03 A;  3VMH A;  4NBC A;  2FYU E;  1SQP E;  2DE5 D;  4NBH D;  1UUV A;  1KB9 E;  1FQT A;  1L0N E;  4NBE A;  3H1I E;  3VCP A;  1WQL A;  1P84 E;  3BCC E;  3VMH D;  3TGU E;  1O7M A;  4QUQ A;  1L0L E;  1ULI A;  1UUW A;  3VCA A;  2GBW A;  3N0Q A;  4NBE D;  5KLI C;  1EG9 A;  1NTK E;  2BCC E;  4H0L D;  2NVE A;  5AEU A;  2XSO A;  3GOB A;  2B1X A; 
#chains in the Genus database with same CATH homology
 1SJG A;  1O7G A;  4HM2 A;  3VMG D;  4NBA A;  3VMI A;  4HJL A;  2E4Q A;  4NB9 A;  4NBA D;  2XR8 A;  3VMI D;  3DQY A;  4QCK A;  3GZX A;  2NUK A;  1O7P A;  4NBC D;  4HM6 A;  4NB9 D;  4P1B H;  2HMO A;  1NTM E;  5KLV E;  1Z02 A;  2ZT9 D;  1EZV E;  4QDD A;  4HM1 A;  4AIV A;  3H1H E;  2Q3W A;  1O7H A;  3L75 E;  1Z01 A;  2DE6 A;  4HM4 A;  3H1J E;  1BE3 E;  2D2C D;  2GBX A;  3D89 A;  4NBF A;  1VCK A;  3C0D A;  3L71 E;  2JO6 A;  2ZYL A;  2XSH A;  3GKE A;  4QDC A;  3CWB E;  2DE6 D;  4NB8 A;  4NBF D;  1JM1 A;  2IBZ E;  1PP9 E;  2QJP C;  3GCF A;  1VF5 D;  4H44 D;  4HM3 A;  2E76 D;  5KKZ C;  1G8J B;  3GB4 A;  4NBG A;  1NTZ E;  3H1L E;  4QUP A;  4NBD A;  1NDO A;  2HML A;  4U3F E;  3GTS A;  1WW9 A;  1BCC E;  3GL2 A;  4NBB A;  2YIU C;  3GKQ A;  2FYN C;  4NBD D;  2DE7 A;  4QDF B;  3GL0 A;  2BMR A;  2QPZ A;  3FOU A;  3L72 E;  4HKV A;  4P1C H;  1SQB E;  3AZC A;  3GZY A;  4NBB D;  1O7N A;  4AAY B;  4QUR A;  2QJK C;  4QDF A;  4EMJ B;  1ZRT E;  1ULJ A;  2HMN A;  2YVJ B;  3CX5 E;  2CKF A;  5HL4 A;  1RIE A;  1O7W A;  5AEW A;  4PV1 D;  2I7F A;  2YFJ A;  3GTE A;  1SQX E;  3EQQ A;  1NYK A;  2HMM A;  4HM0 A;  2HMJ A;  1Q90 C;  4NB8 D;  2YFI A;  1KYO E;  4OGQ D;  2NVG A;  5CXM A;  2E75 D;  2NUM A;  1PPJ E;  3H1K E;  2B24 A;  3GCE A;  4HM8 A;  2NWF A;  5BOK A;  2BMO A;  4HM7 A;  4NBG D;  1NU1 E;  2HMK A;  1SQV E;  2E74 D;  2YFL A;  3VMG A;  1VM9 A;  2XRX A;  2BMQ A;  3EN1 A;  3CXH E;  2QJY C;  2DE5 A;  2NVF A;  1SQQ E;  4H13 D;  4NBH A;  2DE7 D;  4HM5 A;  3L74 E;  2A06 E;  2JZA A;  1RFS A;  3L73 E;  3L70 E;  2E4P A;  4PD4 E;  1G8K B;  1Z03 A;  3VMH A;  4NBC A;  2FYU E;  1SQP E;  2DE5 D;  4NBH D;  1UUV A;  1KB9 E;  1FQT A;  1L0N E;  4NBE A;  3H1I E;  3VCP A;  1WQL A;  1P84 E;  3BCC E;  3VMH D;  3TGU E;  1O7M A;  4QUQ A;  1L0L E;  1ULI A;  1UUW A;  3VCA A;  2GBW A;  3N0Q A;  4NBE D;  5KLI C;  1EG9 A;  1NTK E;  2BCC E;  4H0L D;  2NVE A;  5AEU A;  2XSO A;  3GOB A;  2B1X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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