1V2ZA

Crystal structure of the c-terminal domain of thermosynechococcus elongatus bp-1 kaia
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
106
structure length
106
Chain Sequence
STAFFFRRMSPADKRKLLDELRSIYRTIVLEYFNTDAKVNERIDEFVSKAFFADISVSQVLEIHVELMDTFSKQLKLEGRSEDILLDYRLTLIDVIAHLCEMYRRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Circadian clock protein
molecule keywords circadian clock protein KaiA homolog
publication title Crystal structure of the C-terminal clock-oscillator domain of the cyanobacterial KaiA protein
pubmed doi rcsb
source organism Thermosynechococcus elongatus
total genus 42
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2003-10-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1240.30 Mainly Alpha Orthogonal Bundle Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 KaiA/RbsU domain 1v2zA00
1V2ZA 1R8JA 1Q6BA 1R5QA 1SV1A 1W53A 1SUYA 2J70A 2J6YA 4G86A 1Q6AA 5C5EA 2J6ZA
chains in the Genus database with same CATH superfamily
3WHPA 1Q6BA 1K7YA 1R5QA 4HH3C 4HEHA 5C5EA 2I2XB 4JGIA 1V2ZA 1R8JA 1SV1A 1W53A 1SUYA 3BULA 1SLYA 3IV9A 4M0MA 1QTEA 2J6ZA 1UTUA 3BJDA 2PBIA 1BMTA 4G86A 2FMME 3M1MA 3L9TA 3IVAA 4X8QA 2J70A 1K98A 3EZXA 2J6YA 1QSAA 3H20A 1Q6AA 1UZ3A 5C8DA
chains in the Genus database with same CATH topology
1V2ZA 1R8JA 1Q6BA 1R5QA 1SV1A 1W53A 1SUYA 2J70A 2J6YA 4G86A 1Q6AA 5C5EA 2J6ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V2Z A;  1R8J A;  1Q6B A;  1R5Q A;  1SV1 A;  1W53 A;  1SUY A;  2J70 A;  2J6Y A;  4G86 A;  1Q6A A;  5C5E A;  2J6Z A; 
#chains in the Genus database with same CATH topology
 3WHP A;  1Q6B A;  1K7Y A;  1R5Q A;  4HH3 C;  4HEH A;  5C5E A;  2I2X B;  4JGI A;  1V2Z A;  1R8J A;  1SV1 A;  1W53 A;  1SUY A;  3BUL A;  1SLY A;  3IV9 A;  4M0M A;  1QTE A;  2J6Z A;  1UTU A;  3BJD A;  2PBI A;  1BMT A;  4G86 A;  2FMM E;  3M1M A;  3L9T A;  3IVA A;  4X8Q A;  2J70 A;  1K98 A;  3EZX A;  2J6Y A;  1QSA A;  3H20 A;  1Q6A A;  1UZ3 A;  5C8D A; 
#chains in the Genus database with same CATH homology
 1V2Z A;  1R8J A;  1Q6B A;  1R5Q A;  1SV1 A;  1W53 A;  1SUY A;  2J70 A;  2J6Y A;  4G86 A;  1Q6A A;  5C5E A;  2J6Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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