1V53A

The crystal structure of 3-isopropylmalate dehydrogenase from bacillus coagulans
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
356
structure length
356
Chain Sequence
MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLESSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords 3-isopropylmalate dehydrogenase
publication title The crystal structure of 3-isopropylmalate dehydrogenase from Bacillus coagulans
rcsb
source organism Bacillus coagulans
total genus 125
structure length 356
sequence length 356
chains with identical sequence B
ec nomenclature ec 1.1.1.85: 3-isopropylmalate dehydrogenase.
pdb deposition date 2003-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 1v53A00
2QFWA 2Y40A 4XS3A 3WZVA 5HN5A 1DR8A 5GRIA 3UDUA 5L57A 1PS7A 1IDDA 3MASB 4I3LA 3VL3A 5GRFB 5K11A 3LXYA 1ZORA 5GRHA 3LCBC 5GRLB 3VKZA 3INMA 4UMXA 1BL5A 2DHTA 1XKDA 1PS6A 5ICDA 5J32A 5GREB 1CM7A 2AYQA 4AJBA 1IKAA 5K10A 1GC9A 9ICDA 4Y1PA 1IPDA 4AJRA 3WZXA 1CW4A 4UMYA 4WUOA 3BLXB 1T09A 1DPZA 3U9EA 1G2UA 4I3KA 3VL6A 2D1CA 1U7NA 1CW7A 4HCXA 3TSNA 3TNGA 3US8A 2UXRA 1R8KA 3BLVA 1LWDA 1GROA 5I95A 3ASJA 2UXQA 2E5MA 3U1HA 2Y3ZA 1OSIA 3WZWA 4KZOA 8ICDA 2Y41A 2Y42A 1GRPA 1PB1A 4IWHA 1YXOA 2HI1A 1IDFA 3WZYA 3VL2A 5HN4A 1HQSA 2G4OA 6ICDA 1VI1A 4XXVA 1AI2A 1GC8A 3MASA 1IDCA 5GRIB 5HN6A 1XAAA 3UF6A 5J33A 3ICDA 2D4VA 3FLKA 1WPWA 5DE1A 4BNPA 5J34A 1A05A 5GRLA 4AOUA 1XGVA 4AJAA 3BLVB 4AOYA 2QFYA 5GRHB 4L06A 3R8WA 1IDEA 1WALA 1XADA 4ICDA 3UDOA 5GREA 1DR0A 1HEXA 1V53A 4AJCA 2QFXA 1XABA 1SJSA 4L04A 4L03A 3VMKA 1VLCA 1AI3A 3MAPA 2IV0A 3VMLA 7ICDA 2ZTWA 1W0DA 4JA8A 4JQPA 3TY4A 4F7IA 1ISOA 4AJ3A 3BLXA 4ATYA 3VMJA 3MARA 1TYOA 5GRFA 4AJSA 2E0CA 1V5BA 1HJ6A 1X0LA 1OSJA 1CW1A 1YCOA 2QFVA 3AH3A 5L58A 3FMXX 4YB4A 1P8FA 5I96A 3TY3A 1CNZA 3VL4A 5LGEA 1V94A 1T0LA 3DMSA 1PTMA 4XRXA 5HN3A 1IDMA 4P69C 3VL7A 1PB3A 4AOVA 1XACA
chains in the Genus database with same CATH superfamily
2QFWA 2Y40A 4XS3A 3WZVA 5HN5A 1DR8A 5GRIA 3UDUA 5L57A 1PS7A 1IDDA 3MASB 4I3LA 3VL3A 5GRFB 5K11A 3LXYA 1ZORA 5GRHA 3LCBC 5GRLB 3VKZA 3INMA 4UMXA 1BL5A 2DHTA 1XKDA 1PS6A 5ICDA 5J32A 5GREB 1CM7A 2AYQA 4AJBA 1IKAA 5K10A 1GC9A 9ICDA 4Y1PA 1IPDA 4AJRA 3WZXA 1CW4A 4UMYA 4WUOA 3BLXB 1T09A 1DPZA 3U9EA 1G2UA 4I3KA 3VL6A 2D1CA 1U7NA 1CW7A 4HCXA 3TSNA 3TNGA 3US8A 2UXRA 1R8KA 3BLVA 1LWDA 1GROA 5I95A 3ASJA 2UXQA 2E5MA 3U1HA 2Y3ZA 1OSIA 3WZWA 4KZOA 8ICDA 2Y41A 2Y42A 1GRPA 1PB1A 4IWHA 1YXOA 2HI1A 1IDFA 3WZYA 3VL2A 5HN4A 1HQSA 2G4OA 6ICDA 1VI1A 4XXVA 1AI2A 1GC8A 3MASA 1IDCA 5GRIB 5HN6A 1XAAA 3UF6A 5J33A 3ICDA 2D4VA 3FLKA 1WPWA 5DE1A 4BNPA 5J34A 1A05A 5GRLA 4AOUA 1XGVA 4AJAA 3BLVB 4AOYA 2QFYA 5GRHB 4L06A 3R8WA 1IDEA 1WALA 1XADA 4ICDA 3UDOA 5GREA 1DR0A 1HEXA 1V53A 4AJCA 2QFXA 1XABA 1SJSA 4L04A 4L03A 3VMKA 1VLCA 1AI3A 3MAPA 2IV0A 3VMLA 7ICDA 2ZTWA 1W0DA 4JA8A 4JQPA 3TY4A 4F7IA 1ISOA 4AJ3A 3BLXA 4ATYA 3VMJA 3MARA 1TYOA 5GRFA 4AJSA 2E0CA 1V5BA 1HJ6A 1X0LA 1OSJA 1CW1A 1YCOA 2QFVA 3AH3A 5L58A 3FMXX 4YB4A 1P8FA 5I96A 3TY3A 1CNZA 3VL4A 5LGEA 1V94A 1T0LA 3DMSA 1PTMA 4XRXA 5HN3A 1IDMA 4P69C 3VL7A 1PB3A 4AOVA 1XACA
chains in the Genus database with same CATH topology
2QFWA 2Y40A 4XS3A 3WZVA 5HN5A 1DR8A 5GRIA 3UDUA 5L57A 1PS7A 1IDDA 3MASB 4I3LA 3VL3A 5GRFB 5K11A 3LXYA 1ZORA 5GRHA 3LCBC 5GRLB 3VKZA 3INMA 4UMXA 1BL5A 2DHTA 1XKDA 1PS6A 5ICDA 5J32A 5GREB 1CM7A 2AYQA 4AJBA 1IKAA 5K10A 1GC9A 9ICDA 4Y1PA 1IPDA 4AJRA 3WZXA 1CW4A 4UMYA 4WUOA 3BLXB 1T09A 1DPZA 3U9EA 1G2UA 4I3KA 3VL6A 2D1CA 1U7NA 1CW7A 4HCXA 3TSNA 3TNGA 3US8A 2UXRA 1R8KA 3BLVA 1LWDA 1GROA 5I95A 3ASJA 2UXQA 2E5MA 3U1HA 2Y3ZA 1OSIA 3WZWA 4KZOA 8ICDA 2Y41A 2Y42A 1GRPA 1PB1A 4IWHA 1YXOA 2HI1A 1IDFA 3WZYA 3VL2A 5HN4A 1HQSA 2G4OA 6ICDA 1VI1A 4XXVA 1AI2A 1GC8A 3MASA 1IDCA 5GRIB 5HN6A 1XAAA 3UF6A 5J33A 3ICDA 2D4VA 3FLKA 1WPWA 5DE1A 4BNPA 5J34A 1A05A 5GRLA 4AOUA 1XGVA 4AJAA 3BLVB 4AOYA 2QFYA 5GRHB 4L06A 3R8WA 1IDEA 1WALA 1XADA 4ICDA 3UDOA 5GREA 1DR0A 1HEXA 1V53A 4AJCA 2QFXA 1XABA 1SJSA 4L04A 4L03A 3VMKA 1VLCA 1AI3A 3MAPA 2IV0A 3VMLA 7ICDA 2ZTWA 1W0DA 4JA8A 4JQPA 3TY4A 4F7IA 1ISOA 4AJ3A 3BLXA 4ATYA 3VMJA 3MARA 1TYOA 5GRFA 4AJSA 2E0CA 1V5BA 1HJ6A 1X0LA 1OSJA 1CW1A 1YCOA 2QFVA 3AH3A 5L58A 3FMXX 4YB4A 1P8FA 5I96A 3TY3A 1CNZA 3VL4A 5LGEA 1V94A 1T0LA 3DMSA 1PTMA 4XRXA 5HN3A 1IDMA 4P69C 3VL7A 1PB3A 4AOVA 1XACA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QFW A;  2Y40 A;  4XS3 A;  3WZV A;  5HN5 A;  1DR8 A;  5GRI A;  3UDU A;  5L57 A;  1PS7 A;  1IDD A;  3MAS B;  4I3L A;  3VL3 A;  5GRF B;  5K11 A;  3LXY A;  1ZOR A;  5GRH A;  3LCB C;  5GRL B;  3VKZ A;  3INM A;  4UMX A;  1BL5 A;  2DHT A;  1XKD A;  1PS6 A;  5ICD A;  5J32 A;  5GRE B;  1CM7 A;  2AYQ A;  4AJB A;  1IKA A;  5K10 A;  1GC9 A;  9ICD A;  4Y1P A;  1IPD A;  4AJR A;  3WZX A;  1CW4 A;  4UMY A;  4WUO A;  3BLX B;  1T09 A;  1DPZ A;  3U9E A;  1G2U A;  4I3K A;  3VL6 A;  2D1C A;  1U7N A;  1CW7 A;  4HCX A;  3TSN A;  3TNG A;  3US8 A;  2UXR A;  1R8K A;  3BLV A;  1LWD A;  1GRO A;  5I95 A;  3ASJ A;  2UXQ A;  2E5M A;  3U1H A;  2Y3Z A;  1OSI A;  3WZW A;  4KZO A;  8ICD A;  2Y41 A;  2Y42 A;  1GRP A;  1PB1 A;  4IWH A;  1YXO A;  2HI1 A;  1IDF A;  3WZY A;  3VL2 A;  5HN4 A;  1HQS A;  2G4O A;  6ICD A;  1VI1 A;  4XXV A;  1AI2 A;  1GC8 A;  3MAS A;  1IDC A;  5GRI B;  5HN6 A;  1XAA A;  3UF6 A;  5J33 A;  3ICD A;  2D4V A;  3FLK A;  1WPW A;  5DE1 A;  4BNP A;  5J34 A;  1A05 A;  5GRL A;  4AOU A;  1XGV A;  4AJA A;  3BLV B;  4AOY A;  2QFY A;  5GRH B;  4L06 A;  3R8W A;  1IDE A;  1WAL A;  1XAD A;  4ICD A;  3UDO A;  5GRE A;  1DR0 A;  1HEX A;  1V53 A;  4AJC A;  2QFX A;  1XAB A;  1SJS A;  4L04 A;  4L03 A;  3VMK A;  1VLC A;  1AI3 A;  3MAP A;  2IV0 A;  3VML A;  7ICD A;  2ZTW A;  1W0D A;  4JA8 A;  4JQP A;  3TY4 A;  4F7I A;  1ISO A;  4AJ3 A;  3BLX A;  4ATY A;  3VMJ A;  3MAR A;  1TYO A;  5GRF A;  4AJS A;  2E0C A;  1V5B A;  1HJ6 A;  1X0L A;  1OSJ A;  1CW1 A;  1YCO A;  2QFV A;  3AH3 A;  5L58 A;  3FMX X;  4YB4 A;  1P8F A;  5I96 A;  3TY3 A;  1CNZ A;  3VL4 A;  5LGE A;  1V94 A;  1T0L A;  3DMS A;  1PTM A;  4XRX A;  5HN3 A;  1IDM A;  4P69 C;  3VL7 A;  1PB3 A;  4AOV A;  1XAC A; 
#chains in the Genus database with same CATH topology
 2QFW A;  2Y40 A;  4XS3 A;  3WZV A;  5HN5 A;  1DR8 A;  5GRI A;  3UDU A;  5L57 A;  1PS7 A;  1IDD A;  3MAS B;  4I3L A;  3VL3 A;  5GRF B;  5K11 A;  3LXY A;  1ZOR A;  5GRH A;  3LCB C;  5GRL B;  3VKZ A;  3INM A;  4UMX A;  1BL5 A;  2DHT A;  1XKD A;  1PS6 A;  5ICD A;  5J32 A;  5GRE B;  1CM7 A;  2AYQ A;  4AJB A;  1IKA A;  5K10 A;  1GC9 A;  9ICD A;  4Y1P A;  1IPD A;  4AJR A;  3WZX A;  1CW4 A;  4UMY A;  4WUO A;  3BLX B;  1T09 A;  1DPZ A;  3U9E A;  1G2U A;  4I3K A;  3VL6 A;  2D1C A;  1U7N A;  1CW7 A;  4HCX A;  3TSN A;  3TNG A;  3US8 A;  2UXR A;  1R8K A;  3BLV A;  1LWD A;  1GRO A;  5I95 A;  3ASJ A;  2UXQ A;  2E5M A;  3U1H A;  2Y3Z A;  1OSI A;  3WZW A;  4KZO A;  8ICD A;  2Y41 A;  2Y42 A;  1GRP A;  1PB1 A;  4IWH A;  1YXO A;  2HI1 A;  1IDF A;  3WZY A;  3VL2 A;  5HN4 A;  1HQS A;  2G4O A;  6ICD A;  1VI1 A;  4XXV A;  1AI2 A;  1GC8 A;  3MAS A;  1IDC A;  5GRI B;  5HN6 A;  1XAA A;  3UF6 A;  5J33 A;  3ICD A;  2D4V A;  3FLK A;  1WPW A;  5DE1 A;  4BNP A;  5J34 A;  1A05 A;  5GRL A;  4AOU A;  1XGV A;  4AJA A;  3BLV B;  4AOY A;  2QFY A;  5GRH B;  4L06 A;  3R8W A;  1IDE A;  1WAL A;  1XAD A;  4ICD A;  3UDO A;  5GRE A;  1DR0 A;  1HEX A;  1V53 A;  4AJC A;  2QFX A;  1XAB A;  1SJS A;  4L04 A;  4L03 A;  3VMK A;  1VLC A;  1AI3 A;  3MAP A;  2IV0 A;  3VML A;  7ICD A;  2ZTW A;  1W0D A;  4JA8 A;  4JQP A;  3TY4 A;  4F7I A;  1ISO A;  4AJ3 A;  3BLX A;  4ATY A;  3VMJ A;  3MAR A;  1TYO A;  5GRF A;  4AJS A;  2E0C A;  1V5B A;  1HJ6 A;  1X0L A;  1OSJ A;  1CW1 A;  1YCO A;  2QFV A;  3AH3 A;  5L58 A;  3FMX X;  4YB4 A;  1P8F A;  5I96 A;  3TY3 A;  1CNZ A;  3VL4 A;  5LGE A;  1V94 A;  1T0L A;  3DMS A;  1PTM A;  4XRX A;  5HN3 A;  1IDM A;  4P69 C;  3VL7 A;  1PB3 A;  4AOV A;  1XAC A; 
#chains in the Genus database with same CATH homology
 2QFW A;  2Y40 A;  4XS3 A;  3WZV A;  5HN5 A;  1DR8 A;  5GRI A;  3UDU A;  5L57 A;  1PS7 A;  1IDD A;  3MAS B;  4I3L A;  3VL3 A;  5GRF B;  5K11 A;  3LXY A;  1ZOR A;  5GRH A;  3LCB C;  5GRL B;  3VKZ A;  3INM A;  4UMX A;  1BL5 A;  2DHT A;  1XKD A;  1PS6 A;  5ICD A;  5J32 A;  5GRE B;  1CM7 A;  2AYQ A;  4AJB A;  1IKA A;  5K10 A;  1GC9 A;  9ICD A;  4Y1P A;  1IPD A;  4AJR A;  3WZX A;  1CW4 A;  4UMY A;  4WUO A;  3BLX B;  1T09 A;  1DPZ A;  3U9E A;  1G2U A;  4I3K A;  3VL6 A;  2D1C A;  1U7N A;  1CW7 A;  4HCX A;  3TSN A;  3TNG A;  3US8 A;  2UXR A;  1R8K A;  3BLV A;  1LWD A;  1GRO A;  5I95 A;  3ASJ A;  2UXQ A;  2E5M A;  3U1H A;  2Y3Z A;  1OSI A;  3WZW A;  4KZO A;  8ICD A;  2Y41 A;  2Y42 A;  1GRP A;  1PB1 A;  4IWH A;  1YXO A;  2HI1 A;  1IDF A;  3WZY A;  3VL2 A;  5HN4 A;  1HQS A;  2G4O A;  6ICD A;  1VI1 A;  4XXV A;  1AI2 A;  1GC8 A;  3MAS A;  1IDC A;  5GRI B;  5HN6 A;  1XAA A;  3UF6 A;  5J33 A;  3ICD A;  2D4V A;  3FLK A;  1WPW A;  5DE1 A;  4BNP A;  5J34 A;  1A05 A;  5GRL A;  4AOU A;  1XGV A;  4AJA A;  3BLV B;  4AOY A;  2QFY A;  5GRH B;  4L06 A;  3R8W A;  1IDE A;  1WAL A;  1XAD A;  4ICD A;  3UDO A;  5GRE A;  1DR0 A;  1HEX A;  1V53 A;  4AJC A;  2QFX A;  1XAB A;  1SJS A;  4L04 A;  4L03 A;  3VMK A;  1VLC A;  1AI3 A;  3MAP A;  2IV0 A;  3VML A;  7ICD A;  2ZTW A;  1W0D A;  4JA8 A;  4JQP A;  3TY4 A;  4F7I A;  1ISO A;  4AJ3 A;  3BLX A;  4ATY A;  3VMJ A;  3MAR A;  1TYO A;  5GRF A;  4AJS A;  2E0C A;  1V5B A;  1HJ6 A;  1X0L A;  1OSJ A;  1CW1 A;  1YCO A;  2QFV A;  3AH3 A;  5L58 A;  3FMX X;  4YB4 A;  1P8F A;  5I96 A;  3TY3 A;  1CNZ A;  3VL4 A;  5LGE A;  1V94 A;  1T0L A;  3DMS A;  1PTM A;  4XRX A;  5HN3 A;  1IDM A;  4P69 C;  3VL7 A;  1PB3 A;  4AOV A;  1XAC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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