1V6FA

Solution structure of glia maturation factor-beta from mus musculus
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
151
structure length
151
Chain Sequence
GSSGSSGSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone/growth factor
molecule keywords glia maturation factor, beta
publication title NMR solution structures of actin depolymerizing factor homology domains.
pubmed doi rcsb
source organism Mus musculus
total genus 30
structure length 151
sequence length 151
ec nomenclature
pdb deposition date 2003-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1v6fA00
2KVKA 3EH2A 3A5MS 3EGXA 4PKIG 1NLVG 1VKKA 3FFKA 3CIPG 5A1MA 3EFOB 3FFNA 4PKGG 2MV2A 2XF1A 5L6WC 1KCQA 5KYUB 2VIKA 2FGHA 4KEFA 2XFAA 2LLFA 1SVQA 1T3XA 5HVKD 1HQZ1 1VFQA 1Q8XA 1J72A 2FF6G 3A5NS 4BEX1 3CJBG 1V6FA 5KYXA 1PD0A 1T44G 3EGXB 1T2LA 1M2VA 3CJCG 2VILA 5FAEA 1RGIG 3CI5G 3TU5B 3DAWB 1ESVS 5KYNA 4Z94G 2NUTA 1C0GS 5KYWB 4PKHB 1JHWA 2FH4A 3EG9A 1PCXA 2L72A 2D8BA 1M2OA 2FH2A 1Q8GA 1AK7A 5KYYA 2NUPA 2MP4A 5HVKB 3EGDB 4CBUG 1QPVA 2HD7A 4JD2H 1D4XG 4LIZA 5KYXB 2FH1A 2FH3A 4CBWG 1M2VB 1YAGG 2I2QA 1CFYA 4S10C 1WFSA 1PD1A 3FG6A 3EG9B 2FF3A 4CBXG 5KYYB 3L50A 2QTVA 1NM1G 1H1VG 5FAFA 2W0IA 4KEDA 5IVUA 1UDMA 1COFA 1DEJS 2VACA 5DD2A 1SVRA 2LXXA 3Q2BA 1YVNG 1EQYS 1M4JA 1F7SA 1TMWA 1X67A 3A5LS 1AHQA 3A5OS 1P8ZG 1TVJA 2NUTB 1NPHA 1NMDG 5KYWA 2LJ8A 4KEEA 1T3YA 1MDUA 1C0FS 3EFOA 1SVYA 3FG7A 1CNUA 2NUPB 5KYUA 1AK6A 1WM4A 3EH1A 3EGDA 1P8XA 1WNJA 1D0NA 2MOTA
chains in the Genus database with same CATH superfamily
2KVKA 3EH2A 3A5MS 3EGXA 4PKIG 1NLVG 1VKKA 3FFKA 3CIPG 5A1MA 3EFOB 3FFNA 4PKGG 2MV2A 2XF1A 5L6WC 1KCQA 5KYUB 2VIKA 3DA7A 2FGHA 4KEFA 2XFAA 2LLFA 1SVQA 1T3XA 5HVKD 1HQZ1 1VFQA 1Q8XA 1J72A 2FF6G 3A5NS 4BEX1 3CJBG 1V6FA 5KYXA 1PD0A 1T44G 3EGXB 1T2LA 1M2VA 3CJCG 2VILA 5FAEA 1RGIG 3CI5G 3TU5B 3DAWB 1ESVS 5KYNA 4Z94G 2NUTA 1C0GS 5KYWB 4PKHB 1JHWA 2FH4A 3EG9A 1PCXA 2L72A 2D8BA 1M2OA 2FH2A 1Q8GA 1AK7A 5KYYA 2NUPA 2MP4A 5HVKB 3EGDB 4CBUG 1QPVA 2HD7A 4JD2H 1D4XG 4LIZA 5KYXB 2FH1A 2FH3A 4CBWG 1M2VB 1YAGG 2I2QA 1CFYA 4S10C 1WFSA 1PD1A 3FG6A 3EG9B 2FF3A 4CBXG 5KYYB 3L50A 2QTVA 1NM1G 1H1VG 5FAFA 2W0IA 4KEDA 5IVUA 1UDMA 1COFA 1DEJS 2VACA 5DD2A 1SVRA 2LXXA 3Q2BA 1YVNG 1EQYS 1M4JA 1F7SA 1TMWA 1X67A 3A5LS 1AHQA 3A5OS 1P8ZG 1TVJA 2NUTB 1NPHA 1NMDG 5KYWA 2LJ8A 4KEEA 1T3YA 1MDUA 1C0FS 3EFOA 1SVYA 3FG7A 1CNUA 2NUPB 5KYUA 1AK6A 1WM4A 3EH1A 3EGDA 1P8XA 1WNJA 1D0NA 2MOTA
chains in the Genus database with same CATH topology
2KVKA 3EH2A 3A5MS 3EGXA 4PKIG 1NLVG 1VKKA 3FFKA 3CIPG 5A1MA 3EFOB 3FFNA 4PKGG 2MV2A 2XF1A 5L6WC 1KCQA 5KYUB 2VIKA 3DA7A 2FGHA 4KEFA 2XFAA 2LLFA 1SVQA 1T3XA 5HVKD 1HQZ1 1VFQA 1Q8XA 1J72A 2FF6G 3A5NS 4BEX1 3CJBG 1V6FA 5KYXA 1PD0A 1T44G 3EGXB 1T2LA 1M2VA 3CJCG 2VILA 5FAEA 1RGIG 3CI5G 3TU5B 3DAWB 1ESVS 5KYNA 4Z94G 2NUTA 1C0GS 5KYWB 4PKHB 1JHWA 2FH4A 3EG9A 1PCXA 2L72A 2D8BA 1M2OA 2FH2A 1Q8GA 1AK7A 5KYYA 2NUPA 2MP4A 5HVKB 3EGDB 4CBUG 1QPVA 2HD7A 4JD2H 1D4XG 4LIZA 5KYXB 2FH1A 2FH3A 4CBWG 1M2VB 1YAGG 2I2QA 1CFYA 4S10C 1WFSA 1PD1A 3FG6A 3EG9B 2FF3A 4CBXG 5KYYB 3L50A 2QTVA 1NM1G 1H1VG 5FAFA 2W0IA 4KEDA 5IVUA 1UDMA 1COFA 1DEJS 2VACA 5DD2A 1SVRA 2LXXA 3Q2BA 1YVNG 1EQYS 1M4JA 1F7SA 1TMWA 1X67A 3A5LS 1AHQA 3A5OS 1P8ZG 1TVJA 2NUTB 1NPHA 1NMDG 5KYWA 2LJ8A 4KEEA 1T3YA 1MDUA 1C0FS 3EFOA 1SVYA 3FG7A 1CNUA 2NUPB 5KYUA 1AK6A 1WM4A 3EH1A 3EGDA 1P8XA 1WNJA 1D0NA 2MOTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KVK A;  3EH2 A;  3A5M S;  3EGX A;  4PKI G;  1NLV G;  1VKK A;  3FFK A;  3CIP G;  5A1M A;  3EFO B;  3FFN A;  4PKG G;  2MV2 A;  2XF1 A;  5L6W C;  1KCQ A;  5KYU B;  2VIK A;  2FGH A;  4KEF A;  2XFA A;  2LLF A;  1SVQ A;  1T3X A;  5HVK D;  1HQZ 1;  1VFQ A;  1Q8X A;  1J72 A;  2FF6 G;  3A5N S;  4BEX 1;  3CJB G;  1V6F A;  5KYX A;  1PD0 A;  1T44 G;  3EGX B;  1T2L A;  1M2V A;  3CJC G;  2VIL A;  5FAE A;  1RGI G;  3CI5 G;  3TU5 B;  3DAW B;  1ESV S;  5KYN A;  4Z94 G;  2NUT A;  1C0G S;  5KYW B;  4PKH B;  1JHW A;  2FH4 A;  3EG9 A;  1PCX A;  2L72 A;  2D8B A;  1M2O A;  2FH2 A;  1Q8G A;  1AK7 A;  5KYY A;  2NUP A;  2MP4 A;  5HVK B;  3EGD B;  4CBU G;  1QPV A;  2HD7 A;  4JD2 H;  1D4X G;  4LIZ A;  5KYX B;  2FH1 A;  2FH3 A;  4CBW G;  1M2V B;  1YAG G;  2I2Q A;  1CFY A;  4S10 C;  1WFS A;  1PD1 A;  3FG6 A;  3EG9 B;  2FF3 A;  4CBX G;  5KYY B;  3L50 A;  2QTV A;  1NM1 G;  1H1V G;  5FAF A;  2W0I A;  4KED A;  5IVU A;  1UDM A;  1COF A;  1DEJ S;  2VAC A;  5DD2 A;  1SVR A;  2LXX A;  3Q2B A;  1YVN G;  1EQY S;  1M4J A;  1F7S A;  1TMW A;  1X67 A;  3A5L S;  1AHQ A;  3A5O S;  1P8Z G;  1TVJ A;  2NUT B;  1NPH A;  1NMD G;  5KYW A;  2LJ8 A;  4KEE A;  1T3Y A;  1MDU A;  1C0F S;  3EFO A;  1SVY A;  3FG7 A;  1CNU A;  2NUP B;  5KYU A;  1AK6 A;  1WM4 A;  3EH1 A;  3EGD A;  1P8X A;  1WNJ A;  1D0N A;  2MOT A; 
#chains in the Genus database with same CATH topology
 2KVK A;  3EH2 A;  3A5M S;  3EGX A;  4PKI G;  1NLV G;  1VKK A;  3FFK A;  3CIP G;  5A1M A;  3EFO B;  3FFN A;  4PKG G;  2MV2 A;  2XF1 A;  5L6W C;  1KCQ A;  5KYU B;  2VIK A;  3DA7 A;  2FGH A;  4KEF A;  2XFA A;  2LLF A;  1SVQ A;  1T3X A;  5HVK D;  1HQZ 1;  1VFQ A;  1Q8X A;  1J72 A;  2FF6 G;  3A5N S;  4BEX 1;  3CJB G;  1V6F A;  5KYX A;  1PD0 A;  1T44 G;  3EGX B;  1T2L A;  1M2V A;  3CJC G;  2VIL A;  5FAE A;  1RGI G;  3CI5 G;  3TU5 B;  3DAW B;  1ESV S;  5KYN A;  4Z94 G;  2NUT A;  1C0G S;  5KYW B;  4PKH B;  1JHW A;  2FH4 A;  3EG9 A;  1PCX A;  2L72 A;  2D8B A;  1M2O A;  2FH2 A;  1Q8G A;  1AK7 A;  5KYY A;  2NUP A;  2MP4 A;  5HVK B;  3EGD B;  4CBU G;  1QPV A;  2HD7 A;  4JD2 H;  1D4X G;  4LIZ A;  5KYX B;  2FH1 A;  2FH3 A;  4CBW G;  1M2V B;  1YAG G;  2I2Q A;  1CFY A;  4S10 C;  1WFS A;  1PD1 A;  3FG6 A;  3EG9 B;  2FF3 A;  4CBX G;  5KYY B;  3L50 A;  2QTV A;  1NM1 G;  1H1V G;  5FAF A;  2W0I A;  4KED A;  5IVU A;  1UDM A;  1COF A;  1DEJ S;  2VAC A;  5DD2 A;  1SVR A;  2LXX A;  3Q2B A;  1YVN G;  1EQY S;  1M4J A;  1F7S A;  1TMW A;  1X67 A;  3A5L S;  1AHQ A;  3A5O S;  1P8Z G;  1TVJ A;  2NUT B;  1NPH A;  1NMD G;  5KYW A;  2LJ8 A;  4KEE A;  1T3Y A;  1MDU A;  1C0F S;  3EFO A;  1SVY A;  3FG7 A;  1CNU A;  2NUP B;  5KYU A;  1AK6 A;  1WM4 A;  3EH1 A;  3EGD A;  1P8X A;  1WNJ A;  1D0N A;  2MOT A; 
#chains in the Genus database with same CATH homology
 2KVK A;  3EH2 A;  3A5M S;  3EGX A;  4PKI G;  1NLV G;  1VKK A;  3FFK A;  3CIP G;  5A1M A;  3EFO B;  3FFN A;  4PKG G;  2MV2 A;  2XF1 A;  5L6W C;  1KCQ A;  5KYU B;  2VIK A;  3DA7 A;  2FGH A;  4KEF A;  2XFA A;  2LLF A;  1SVQ A;  1T3X A;  5HVK D;  1HQZ 1;  1VFQ A;  1Q8X A;  1J72 A;  2FF6 G;  3A5N S;  4BEX 1;  3CJB G;  1V6F A;  5KYX A;  1PD0 A;  1T44 G;  3EGX B;  1T2L A;  1M2V A;  3CJC G;  2VIL A;  5FAE A;  1RGI G;  3CI5 G;  3TU5 B;  3DAW B;  1ESV S;  5KYN A;  4Z94 G;  2NUT A;  1C0G S;  5KYW B;  4PKH B;  1JHW A;  2FH4 A;  3EG9 A;  1PCX A;  2L72 A;  2D8B A;  1M2O A;  2FH2 A;  1Q8G A;  1AK7 A;  5KYY A;  2NUP A;  2MP4 A;  5HVK B;  3EGD B;  4CBU G;  1QPV A;  2HD7 A;  4JD2 H;  1D4X G;  4LIZ A;  5KYX B;  2FH1 A;  2FH3 A;  4CBW G;  1M2V B;  1YAG G;  2I2Q A;  1CFY A;  4S10 C;  1WFS A;  1PD1 A;  3FG6 A;  3EG9 B;  2FF3 A;  4CBX G;  5KYY B;  3L50 A;  2QTV A;  1NM1 G;  1H1V G;  5FAF A;  2W0I A;  4KED A;  5IVU A;  1UDM A;  1COF A;  1DEJ S;  2VAC A;  5DD2 A;  1SVR A;  2LXX A;  3Q2B A;  1YVN G;  1EQY S;  1M4J A;  1F7S A;  1TMW A;  1X67 A;  3A5L S;  1AHQ A;  3A5O S;  1P8Z G;  1TVJ A;  2NUT B;  1NPH A;  1NMD G;  5KYW A;  2LJ8 A;  4KEE A;  1T3Y A;  1MDU A;  1C0F S;  3EFO A;  1SVY A;  3FG7 A;  1CNU A;  2NUP B;  5KYU A;  1AK6 A;  1WM4 A;  3EH1 A;  3EGD A;  1P8X A;  1WNJ A;  1D0N A;  2MOT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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