1V6ZA

Crystal structure of tt1573 from thermus thermophilus
Total Genus 68
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
Knots found
sequence length
227
structure length
227
Chain Sequence
RPHRAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of TT1573 from Thermus thermophilus
rcsb
molecule tags Transferase
molecule keywords hypothetical protein TTHA0657
total genus 68
structure length 227
sequence length 227
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2003-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 1v6zA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1v6zA02
4YQIA 2EGVA 4YQ1A 1Z85A 3KTYA 4H3ZA 1NXZA 4YQTA 4CNGA 3BBEA 4YQ8A 4YQRA 5CO4A 4YPWA 2Z0YA 3N4JA 4MCBA 4YQ2A 1UAKA 1V2XA 2QMMA 4PZKA 4KDZA 3KY7A 4YQCA 4X3LA 4YQ0A 1V6ZA 1IPAA 4CNFA 1O6DA 1X7OA 3QUVA 3IEFA 1J85A 4YPYA 1VHYA 4JAKA 4YQDA 4YQ6A 1OY5A 2NWAA 4YVGA 3NK6A 1UALA 2YY8A 3GYQA 3ONPA 1GZ0A 4YQ7A 5GMBA 1NS5A 3E5YA 3O7BA 4YQNA 3OINA 4YVJA 4YQOA 3N4KA 3OIIA 3IC6A 4H3YA 4YQJA 1K3RA 4J3CA 5GMCA 5FAIA 1ZJRA 2HA8A 4XBOA 2CX8A 4YQPA 4YQKA 4MCCA 4KGNA 3AIAA 3AXZA 4YQGA 3OIJA 4RG1A 4YPXA 2QWVA 3KNUA 3BBHA 3L8UA 3ILKA 1TO0A 4YQQA 1VH0A 4CNEA 4JALA 1MXIA 5D9FA 4IG6A 4YQ5A 3DCMX 4YQBA 4MCDA 4YVKA 5GM8A 2V3JA 3BBDA 1X7PA 2I6DA 1UAMA 4YQ3A 3NK7A 4X3MA 4L69A 4CNDA 3KW2A 4E8BA 4YQSA 1VHKA 4YQ9A 4YQLA 1UAJA 4YQ4A 4YPZA 2EGWA 2O3AA 4YQAA 4YVIA 4FAKA 3AI9X 4YVHA 2V3KA 1P9PA
chains in the Genus database with same CATH superfamily
4YQIA 2EGVA 4JXXA 4YQ1A 1Z85A 3KTYA 4H3ZA 1NXZA 4YQTA 3CZBA 2ZJRS 5DM6S 4IOAS 4CNGA 3BBEA 4YQ8A 4YQRA 5CO4A 4YPWA 1QTQA 2G6GA 2Z0YA 5IZNA 3N4JA 4MCBA 4YQ2A 1UAKA 4V194 1V2XA 2QMMA 4PZKA 2RD2A 4KDZA 3KY7A 4WFBS 4YQCA 5JVGS 4X3LA 4YQ0A 5HL7S 4JWJA 2AE0X 1EUYA 1V6ZA 1D6KA 1IPAA 4CNFA 4WFAS 1O6DA 1X7OA 5BNZA 3QUVA 4JYZA 1J85A 3W2VB 3IEFA 4YPYA 5JVHS 1VHYA 4WF9S 4JAKA 4YQDA 4YQ6A 1OY5A 2ZJPS 2NWAA 4YVGA 4H4KA 2RE8A 3NK6A 1UALA 2YY8A 3GYQA 3ONPA 1GZ0A 4YQ7A 5GMBA 1NS5A 4IOCS 4JWGA 3E5YA 3X1LB 3O7BA 4YQNA 1QRUA 3OINA 1UDXA 4YVJA 4YQOA 5GAHW 2PNWA 1B75A 3N4KA 3OIIA 3IC6A 4H3YA 4YQJA 3CF5S 4JWHA 1K3RA 1O0CA 4UY88 4J3CA 5GMCA 1QRSA 2G5DA 5FAIA 1EXDA 1ZJRA 2HA8A 4WFNS 3PIPS 2ZJQS 4XBOA 2CX8A 4YQPA 2PJJA 4YQKA 4MCCA 4KGNA 3AIAA 5GAEW 3AXZA 1EUQA 4YQGA 4WCES 3AIIA 3OIJA 1GTRA 4RG1A 3W2WB 4YPXA 2HZ7A 1FEUA 2QWVA 3KNUA 5GADW 3BBHA 4FMWA 3J7ZV 4JXZA 1QRTA 3ILKA 1TO0A 3L8UA 4YQQA 4H3SA 1GTSA 1VH0A 4P2BA 5DM7S 2PICA 4CNEA 3DLLS 4JWFA 4JALA 2GAEA 4U67S 1DFUP 1MXIA 4IG6A 5D9FA 1ZJWA 4YQ5A 3DCMX 1O0BA 4YQBA 4MCDA 4YVKA 5GM8A 2V3JA 3BBDA 1X7PA 3PIOS 2I6DA 5GAGW 1UAMA 4YQ3A 1NYLA 3NK7A 4X3MA 4L69A 4CNDA 3KW2A 4E8BA 4YQSA 1VHKA 4YQ9A 4YQLA 1UAJA 4YQ4A 4YPZA 2EGWA 2O3AA 4IO9S 4YQAA 4YVIA 4FAKA 3AI9X 4YVHA 2V3KA 2PI8A 1P9PA
chains in the Genus database with same CATH topology
4YQIA 2EGVA 4YQ1A 1Z85A 3KTYA 4H3ZA 1NXZA 4YQTA 4CNGA 3BBEA 4YQ8A 4YQRA 5CO4A 4YPWA 2Z0YA 3N4JA 4MCBA 4YQ2A 1UAKA 1V2XA 2QMMA 4PZKA 4KDZA 3KY7A 4YQCA 4X3LA 4YQ0A 4JWJA 1V6ZA 1IPAA 4CNFA 1O6DA 1X7OA 3QUVA 3IEFA 1J85A 4YPYA 1VHYA 4JAKA 4YQDA 4YQ6A 1OY5A 2NWAA 4YVGA 3NK6A 1UALA 2YY8A 3GYQA 3ONPA 1GZ0A 4YQ7A 5GMBA 1NS5A 4JWGA 3E5YA 3O7BA 4YQNA 3OINA 4YVJA 4YQOA 3N4KA 3OIIA 3IC6A 4H3YA 4YQJA 4JWHA 1K3RA 4J3CA 5GMCA 5FAIA 1ZJRA 2HA8A 4XBOA 2CX8A 4YQPA 4YQKA 4MCCA 4KGNA 3AIAA 3AXZA 4YQGA 3OIJA 4RG1A 4YPXA 2QWVA 3KNUA 3BBHA 4FMWA 3L8UA 3ILKA 1TO0A 4YQQA 1VH0A 4CNEA 4JWFA 4JALA 1MXIA 5D9FA 4IG6A 4YQ5A 3DCMX 4YQBA 4MCDA 4YVKA 5GM8A 2V3JA 3BBDA 1X7PA 2I6DA 1UAMA 4YQ3A 3NK7A 4X3MA 4L69A 4CNDA 3KW2A 4E8BA 4YQSA 1VHKA 4YQ9A 4YQLA 1UAJA 4YQ4A 4YPZA 2EGWA 2O3AA 4YQAA 4YVIA 4FAKA 3AI9X 4YVHA 2V3KA 1P9PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQI A;  2EGV A;  4YQ1 A;  1Z85 A;  3KTY A;  4H3Z A;  1NXZ A;  4YQT A;  4CNG A;  3BBE A;  4YQ8 A;  4YQR A;  5CO4 A;  4YPW A;  2Z0Y A;  3N4J A;  4MCB A;  4YQ2 A;  1UAK A;  1V2X A;  2QMM A;  4PZK A;  4KDZ A;  3KY7 A;  4YQC A;  4X3L A;  4YQ0 A;  1V6Z A;  1IPA A;  4CNF A;  1O6D A;  1X7O A;  3QUV A;  3IEF A;  1J85 A;  4YPY A;  1VHY A;  4JAK A;  4YQD A;  4YQ6 A;  1OY5 A;  2NWA A;  4YVG A;  3NK6 A;  1UAL A;  2YY8 A;  3GYQ A;  3ONP A;  1GZ0 A;  4YQ7 A;  5GMB A;  1NS5 A;  3E5Y A;  3O7B A;  4YQN A;  3OIN A;  4YVJ A;  4YQO A;  3N4K A;  3OII A;  3IC6 A;  4H3Y A;  4YQJ A;  1K3R A;  4J3C A;  5GMC A;  5FAI A;  1ZJR A;  2HA8 A;  4XBO A;  2CX8 A;  4YQP A;  4YQK A;  4MCC A;  4KGN A;  3AIA A;  3AXZ A;  4YQG A;  3OIJ A;  4RG1 A;  4YPX A;  2QWV A;  3KNU A;  3BBH A;  3L8U A;  3ILK A;  1TO0 A;  4YQQ A;  1VH0 A;  4CNE A;  4JAL A;  1MXI A;  5D9F A;  4IG6 A;  4YQ5 A;  3DCM X;  4YQB A;  4MCD A;  4YVK A;  5GM8 A;  2V3J A;  3BBD A;  1X7P A;  2I6D A;  1UAM A;  4YQ3 A;  3NK7 A;  4X3M A;  4L69 A;  4CND A;  3KW2 A;  4E8B A;  4YQS A;  1VHK A;  4YQ9 A;  4YQL A;  1UAJ A;  4YQ4 A;  4YPZ A;  2EGW A;  2O3A A;  4YQA A;  4YVI A;  4FAK A;  3AI9 X;  4YVH A;  2V3K A;  1P9P A; 
#chains in the Genus database with same CATH topology
 4YQI A;  2EGV A;  4JXX A;  4YQ1 A;  1Z85 A;  3KTY A;  4H3Z A;  1NXZ A;  4YQT A;  3CZB A;  2ZJR S;  5DM6 S;  4IOA S;  4CNG A;  3BBE A;  4YQ8 A;  4YQR A;  5CO4 A;  4YPW A;  1QTQ A;  2G6G A;  2Z0Y A;  5IZN A;  3N4J A;  4MCB A;  4YQ2 A;  1UAK A;  4V19 4;  1V2X A;  2QMM A;  4PZK A;  2RD2 A;  4KDZ A;  3KY7 A;  4WFB S;  4YQC A;  5JVG S;  4X3L A;  4YQ0 A;  5HL7 S;  4JWJ A;  2AE0 X;  1EUY A;  1V6Z A;  1D6K A;  1IPA A;  4CNF A;  4WFA S;  1O6D A;  1X7O A;  5BNZ A;  3QUV A;  4JYZ A;  1J85 A;  3W2V B;  3IEF A;  4YPY A;  5JVH S;  1VHY A;  4WF9 S;  4JAK A;  4YQD A;  4YQ6 A;  1OY5 A;  2ZJP S;  2NWA A;  4YVG A;  4H4K A;  2RE8 A;  3NK6 A;  1UAL A;  2YY8 A;  3GYQ A;  3ONP A;  1GZ0 A;  4YQ7 A;  5GMB A;  1NS5 A;  4IOC S;  4JWG A;  3E5Y A;  3X1L B;  3O7B A;  4YQN A;  1QRU A;  3OIN A;  1UDX A;  4YVJ A;  4YQO A;  5GAH W;  2PNW A;  1B75 A;  3N4K A;  3OII A;  3IC6 A;  4H3Y A;  4YQJ A;  3CF5 S;  4JWH A;  1K3R A;  1O0C A;  4UY8 8;  4J3C A;  5GMC A;  1QRS A;  2G5D A;  5FAI A;  1EXD A;  1ZJR A;  2HA8 A;  4WFN S;  3PIP S;  2ZJQ S;  4XBO A;  2CX8 A;  4YQP A;  2PJJ A;  4YQK A;  4MCC A;  4KGN A;  3AIA A;  5GAE W;  3AXZ A;  1EUQ A;  4YQG A;  4WCE S;  3AII A;  3OIJ A;  1GTR A;  4RG1 A;  3W2W B;  4YPX A;  2HZ7 A;  1FEU A;  2QWV A;  3KNU A;  5GAD W;  3BBH A;  4FMW A;  3J7Z V;  4JXZ A;  1QRT A;  3ILK A;  1TO0 A;  3L8U A;  4YQQ A;  4H3S A;  1GTS A;  1VH0 A;  4P2B A;  5DM7 S;  2PIC A;  4CNE A;  3DLL S;  4JWF A;  4JAL A;  2GAE A;  4U67 S;  1DFU P;  1MXI A;  4IG6 A;  5D9F A;  1ZJW A;  4YQ5 A;  3DCM X;  1O0B A;  4YQB A;  4MCD A;  4YVK A;  5GM8 A;  2V3J A;  3BBD A;  1X7P A;  3PIO S;  2I6D A;  5GAG W;  1UAM A;  4YQ3 A;  1NYL A;  3NK7 A;  4X3M A;  4L69 A;  4CND A;  3KW2 A;  4E8B A;  4YQS A;  1VHK A;  4YQ9 A;  4YQL A;  1UAJ A;  4YQ4 A;  4YPZ A;  2EGW A;  2O3A A;  4IO9 S;  4YQA A;  4YVI A;  4FAK A;  3AI9 X;  4YVH A;  2V3K A;  2PI8 A;  1P9P A; 
#chains in the Genus database with same CATH homology
 4YQI A;  2EGV A;  4YQ1 A;  1Z85 A;  3KTY A;  4H3Z A;  1NXZ A;  4YQT A;  4CNG A;  3BBE A;  4YQ8 A;  4YQR A;  5CO4 A;  4YPW A;  2Z0Y A;  3N4J A;  4MCB A;  4YQ2 A;  1UAK A;  1V2X A;  2QMM A;  4PZK A;  4KDZ A;  3KY7 A;  4YQC A;  4X3L A;  4YQ0 A;  4JWJ A;  1V6Z A;  1IPA A;  4CNF A;  1O6D A;  1X7O A;  3QUV A;  3IEF A;  1J85 A;  4YPY A;  1VHY A;  4JAK A;  4YQD A;  4YQ6 A;  1OY5 A;  2NWA A;  4YVG A;  3NK6 A;  1UAL A;  2YY8 A;  3GYQ A;  3ONP A;  1GZ0 A;  4YQ7 A;  5GMB A;  1NS5 A;  4JWG A;  3E5Y A;  3O7B A;  4YQN A;  3OIN A;  4YVJ A;  4YQO A;  3N4K A;  3OII A;  3IC6 A;  4H3Y A;  4YQJ A;  4JWH A;  1K3R A;  4J3C A;  5GMC A;  5FAI A;  1ZJR A;  2HA8 A;  4XBO A;  2CX8 A;  4YQP A;  4YQK A;  4MCC A;  4KGN A;  3AIA A;  3AXZ A;  4YQG A;  3OIJ A;  4RG1 A;  4YPX A;  2QWV A;  3KNU A;  3BBH A;  4FMW A;  3L8U A;  3ILK A;  1TO0 A;  4YQQ A;  1VH0 A;  4CNE A;  4JWF A;  4JAL A;  1MXI A;  5D9F A;  4IG6 A;  4YQ5 A;  3DCM X;  4YQB A;  4MCD A;  4YVK A;  5GM8 A;  2V3J A;  3BBD A;  1X7P A;  2I6D A;  1UAM A;  4YQ3 A;  3NK7 A;  4X3M A;  4L69 A;  4CND A;  3KW2 A;  4E8B A;  4YQS A;  1VHK A;  4YQ9 A;  4YQL A;  1UAJ A;  4YQ4 A;  4YPZ A;  2EGW A;  2O3A A;  4YQA A;  4YVI A;  4FAK A;  3AI9 X;  4YVH A;  2V3K A;  1P9P A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...