1V6ZA

Crystal structure of tt1573 from thermus thermophilus
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
Knots found
sequence length
227
structure length
227
Chain Sequence
RPHRAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein TTHA0657
publication title Crystal structure of TT1573 from Thermus thermophilus
rcsb
molecule tags Transferase
total genus 68
structure length 227
sequence length 227
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2003-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 1v6zA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1v6zA02
2EGVA 5GMBA 4YQGA 1VHKA 1X7PA 1MXIA 2V3KA 4YVHA 4CNFA 1GZ0A 4YQPA 2CX8A 3O7BA 4YQ1A 4YQ9A 4YQ2A 5GMCA 3N4JA 3GYQA 2I6DA 1O6DA 4YQKA 4KDZA 4YQ7A 1V2XA 2Z0YA 3KTYA 1UAJA 2O3AA 1V6ZA 3IC6A 4CNEA 4YQOA 4JALA 4YQTA 4YQLA 3KNUA 3AI9X 1J85A 1X7OA 2NWAA 3BBDA 4KGNA 1ZJRA 3E5YA 1NXZA 3KY7A 5GM8A 2QMMA 4YQSA 3ONPA 3KW2A 1K3RA 4YVIA 1TO0A 3BBHA 4CNDA 4YQRA 4YVJA 4YQDA 2YY8A 4J3CA 3N4KA 2HA8A 3DCMX 1VH0A 4XBOA 4YQJA 4X3LA 5D9FA 4YQIA 2QWVA 3OIIA 4IG6A 1Z85A 4FAKA 4YQ6A 1IPAA 4YPYA 1UAKA 4YQQA 3OINA 4RG1A 4PZKA 4MCBA 4YQBA 4JAKA 4H3YA 4YQNA 1UALA 4YQCA 4YPZA 4X3MA 4YPXA 4YQ8A 2EGWA 3BBEA 4YQ3A 4YQ5A 1NS5A 2V3JA 4YQ4A 3AIAA 3NK7A 3L8UA 3NK6A 1P9PA 5FAIA 1VHYA 5CO4A 4MCDA 3QUVA 4YQ0A 4YVGA 4CNGA 1OY5A 4E8BA 3OIJA 1UAMA 3AXZA 4MCCA 4YPWA 4YQAA 3IEFA 4YVKA 4L69A 3ILKA 4H3ZA
chains in the Genus database with same CATH superfamily
4JWGA 2EGVA 2PJJA 5GMBA 2G5DA 4YQGA 4WF9S 2G6GA 4P2BA 2ZJPS 1VHKA 3AIIA 5GAEW 1X7PA 4YVIA 1MXIA 2V3KA 3W2VB 1B75A 4YVHA 4CNFA 1GZ0A 4YQPA 2CX8A 3O7BA 4YQ1A 4YQ9A 4YQ2A 5GADW 5GMCA 1NYLA 3N4JA 3GYQA 1QTQA 2I6DA 4FMWA 1O6DA 1DFUP 2ZJRS 4YQKA 4KDZA 4YQ7A 3PIPS 3CF5S 2Z0YA 1V2XA 1UAJA 3KTYA 2O3AA 4JWJA 1O0BA 1V6ZA 3IC6A 4JYZA 4CNEA 4YQOA 5GAHW 4JALA 4U67S 4YQTA 4YQLA 3KNUA 2ZJQS 3AI9X 5BNZA 1J85A 1X7OA 2NWAA 3J7ZV 3BBDA 1ZJRA 4KGNA 3E5YA 1ZJWA 3X1LB 2GAEA 1NXZA 3KY7A 5GM8A 2QMMA 4YQSA 1GTSA 3ONPA 3KW2A 2RE8A 1QRUA 1K3RA 1EUYA 5JVHS 1TO0A 3BBHA 4CNDA 4YQDA 4YQRA 2YY8A 4YVJA 4J3CA 2PICA 3N4KA 2HA8A 2PNWA 5DM7S 4WCES 1QRTA 4H3SA 3DCMX 1VH0A 4XBOA 4YQJA 4X3LA 5D9FA 4YQIA 2QWVA 3OIIA 4IG6A 4IOCS 1Z85A 4FAKA 4YQ6A 1EUQA 1IPAA 3CZBA 2HZ7A 4YPYA 1FEUA 1UAKA 4YQQA 5GAGW 3OINA 3PIOS 4WFBS 4RG1A 4PZKA 4MCBA 4YQBA 4JAKA 4H3YA 4YQNA 4WFAS 1GTRA 1UALA 1D6KA 4YQCA 3W2WB 1EXDA 4YPZA 4IOAS 4X3MA 2PI8A 5JVGS 4YPXA 4YQ8A 2EGWA 3BBEA 1QRSA 5IZNA 1UDXA 4JXXA 4YQ3A 4YQ5A 1NS5A 2AE0X 2V3JA 5HL7S 5DM6S 4IO9S 4UY88 4YQ4A 3AIAA 3NK7A 3L8UA 2RD2A 1O0CA 4JXZA 3NK6A 1P9PA 5FAIA 1VHYA 5CO4A 4V194 4MCDA 3QUVA 4JWFA 4YQ0A 4H4KA 4YVGA 4CNGA 1OY5A 4WFNS 3DLLS 4JWHA 4E8BA 3OIJA 1UAMA 3AXZA 4MCCA 4YPWA 4YQAA 3IEFA 4YVKA 4L69A 3ILKA 4H3ZA
chains in the Genus database with same CATH topology
4JWGA 2EGVA 5GMBA 4YQGA 1VHKA 1X7PA 1MXIA 2V3KA 4YVHA 4CNFA 1GZ0A 4YQPA 2CX8A 3O7BA 4YQ1A 4YQ9A 4YQ2A 5GMCA 3N4JA 3GYQA 2I6DA 4FMWA 1O6DA 4YQKA 4KDZA 4YQ7A 1V2XA 2Z0YA 3KTYA 1UAJA 2O3AA 4JWJA 1V6ZA 3IC6A 4CNEA 4YQOA 4JALA 4YQTA 4YQLA 3KNUA 3AI9X 1J85A 1X7OA 2NWAA 3BBDA 4KGNA 1ZJRA 3E5YA 1NXZA 3KY7A 5GM8A 2QMMA 4YQSA 3ONPA 3KW2A 1K3RA 4YVIA 1TO0A 3BBHA 4CNDA 4YQRA 4YVJA 4YQDA 2YY8A 4J3CA 3N4KA 2HA8A 3DCMX 1VH0A 4XBOA 4YQJA 4X3LA 5D9FA 4YQIA 2QWVA 3OIIA 4IG6A 1Z85A 4FAKA 4YQ6A 1IPAA 4YPYA 1UAKA 4YQQA 3OINA 4RG1A 4PZKA 4MCBA 4YQBA 4JAKA 4H3YA 4YQNA 1UALA 4YQCA 4YPZA 4X3MA 4YPXA 4YQ8A 2EGWA 3BBEA 4YQ3A 4YQ5A 1NS5A 2V3JA 4YQ4A 3AIAA 3NK7A 3L8UA 3NK6A 1P9PA 5FAIA 1VHYA 5CO4A 4MCDA 3QUVA 4JWFA 4YQ0A 4YVGA 4CNGA 1OY5A 4JWHA 4E8BA 3OIJA 1UAMA 3AXZA 4MCCA 4YPWA 4YQAA 3IEFA 4YVKA 4L69A 3ILKA 4H3ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EGV A;  5GMB A;  4YQG A;  1VHK A;  1X7P A;  1MXI A;  2V3K A;  4YVH A;  4CNF A;  1GZ0 A;  4YQP A;  2CX8 A;  3O7B A;  4YQ1 A;  4YQ9 A;  4YQ2 A;  5GMC A;  3N4J A;  3GYQ A;  2I6D A;  1O6D A;  4YQK A;  4KDZ A;  4YQ7 A;  1V2X A;  2Z0Y A;  3KTY A;  1UAJ A;  2O3A A;  1V6Z A;  3IC6 A;  4CNE A;  4YQO A;  4JAL A;  4YQT A;  4YQL A;  3KNU A;  3AI9 X;  1J85 A;  1X7O A;  2NWA A;  3BBD A;  4KGN A;  1ZJR A;  3E5Y A;  1NXZ A;  3KY7 A;  5GM8 A;  2QMM A;  4YQS A;  3ONP A;  3KW2 A;  1K3R A;  4YVI A;  1TO0 A;  3BBH A;  4CND A;  4YQR A;  4YVJ A;  4YQD A;  2YY8 A;  4J3C A;  3N4K A;  2HA8 A;  3DCM X;  1VH0 A;  4XBO A;  4YQJ A;  4X3L A;  5D9F A;  4YQI A;  2QWV A;  3OII A;  4IG6 A;  1Z85 A;  4FAK A;  4YQ6 A;  1IPA A;  4YPY A;  1UAK A;  4YQQ A;  3OIN A;  4RG1 A;  4PZK A;  4MCB A;  4YQB A;  4JAK A;  4H3Y A;  4YQN A;  1UAL A;  4YQC A;  4YPZ A;  4X3M A;  4YPX A;  4YQ8 A;  2EGW A;  3BBE A;  4YQ3 A;  4YQ5 A;  1NS5 A;  2V3J A;  4YQ4 A;  3AIA A;  3NK7 A;  3L8U A;  3NK6 A;  1P9P A;  5FAI A;  1VHY A;  5CO4 A;  4MCD A;  3QUV A;  4YQ0 A;  4YVG A;  4CNG A;  1OY5 A;  4E8B A;  3OIJ A;  1UAM A;  3AXZ A;  4MCC A;  4YPW A;  4YQA A;  3IEF A;  4YVK A;  4L69 A;  3ILK A;  4H3Z A; 
#chains in the Genus database with same CATH topology
 4JWG A;  2EGV A;  2PJJ A;  5GMB A;  2G5D A;  4YQG A;  4WF9 S;  2G6G A;  4P2B A;  2ZJP S;  1VHK A;  3AII A;  5GAE W;  1X7P A;  4YVI A;  1MXI A;  2V3K A;  3W2V B;  1B75 A;  4YVH A;  4CNF A;  1GZ0 A;  4YQP A;  2CX8 A;  3O7B A;  4YQ1 A;  4YQ9 A;  4YQ2 A;  5GAD W;  5GMC A;  1NYL A;  3N4J A;  3GYQ A;  1QTQ A;  2I6D A;  4FMW A;  1O6D A;  1DFU P;  2ZJR S;  4YQK A;  4KDZ A;  4YQ7 A;  3PIP S;  3CF5 S;  2Z0Y A;  1V2X A;  1UAJ A;  3KTY A;  2O3A A;  4JWJ A;  1O0B A;  1V6Z A;  3IC6 A;  4JYZ A;  4CNE A;  4YQO A;  5GAH W;  4JAL A;  4U67 S;  4YQT A;  4YQL A;  3KNU A;  2ZJQ S;  3AI9 X;  5BNZ A;  1J85 A;  1X7O A;  2NWA A;  3J7Z V;  3BBD A;  1ZJR A;  4KGN A;  3E5Y A;  1ZJW A;  3X1L B;  2GAE A;  1NXZ A;  3KY7 A;  5GM8 A;  2QMM A;  4YQS A;  1GTS A;  3ONP A;  3KW2 A;  2RE8 A;  1QRU A;  1K3R A;  1EUY A;  5JVH S;  1TO0 A;  3BBH A;  4CND A;  4YQD A;  4YQR A;  2YY8 A;  4YVJ A;  4J3C A;  2PIC A;  3N4K A;  2HA8 A;  2PNW A;  5DM7 S;  4WCE S;  1QRT A;  4H3S A;  3DCM X;  1VH0 A;  4XBO A;  4YQJ A;  4X3L A;  5D9F A;  4YQI A;  2QWV A;  3OII A;  4IG6 A;  4IOC S;  1Z85 A;  4FAK A;  4YQ6 A;  1EUQ A;  1IPA A;  3CZB A;  2HZ7 A;  4YPY A;  1FEU A;  1UAK A;  4YQQ A;  5GAG W;  3OIN A;  3PIO S;  4WFB S;  4RG1 A;  4PZK A;  4MCB A;  4YQB A;  4JAK A;  4H3Y A;  4YQN A;  4WFA S;  1GTR A;  1UAL A;  1D6K A;  4YQC A;  3W2W B;  1EXD A;  4YPZ A;  4IOA S;  4X3M A;  2PI8 A;  5JVG S;  4YPX A;  4YQ8 A;  2EGW A;  3BBE A;  1QRS A;  5IZN A;  1UDX A;  4JXX A;  4YQ3 A;  4YQ5 A;  1NS5 A;  2AE0 X;  2V3J A;  5HL7 S;  5DM6 S;  4IO9 S;  4UY8 8;  4YQ4 A;  3AIA A;  3NK7 A;  3L8U A;  2RD2 A;  1O0C A;  4JXZ A;  3NK6 A;  1P9P A;  5FAI A;  1VHY A;  5CO4 A;  4V19 4;  4MCD A;  3QUV A;  4JWF A;  4YQ0 A;  4H4K A;  4YVG A;  4CNG A;  1OY5 A;  4WFN S;  3DLL S;  4JWH A;  4E8B A;  3OIJ A;  1UAM A;  3AXZ A;  4MCC A;  4YPW A;  4YQA A;  3IEF A;  4YVK A;  4L69 A;  3ILK A;  4H3Z A; 
#chains in the Genus database with same CATH homology
 4JWG A;  2EGV A;  5GMB A;  4YQG A;  1VHK A;  1X7P A;  1MXI A;  2V3K A;  4YVH A;  4CNF A;  1GZ0 A;  4YQP A;  2CX8 A;  3O7B A;  4YQ1 A;  4YQ9 A;  4YQ2 A;  5GMC A;  3N4J A;  3GYQ A;  2I6D A;  4FMW A;  1O6D A;  4YQK A;  4KDZ A;  4YQ7 A;  1V2X A;  2Z0Y A;  3KTY A;  1UAJ A;  2O3A A;  4JWJ A;  1V6Z A;  3IC6 A;  4CNE A;  4YQO A;  4JAL A;  4YQT A;  4YQL A;  3KNU A;  3AI9 X;  1J85 A;  1X7O A;  2NWA A;  3BBD A;  4KGN A;  1ZJR A;  3E5Y A;  1NXZ A;  3KY7 A;  5GM8 A;  2QMM A;  4YQS A;  3ONP A;  3KW2 A;  1K3R A;  4YVI A;  1TO0 A;  3BBH A;  4CND A;  4YQR A;  4YVJ A;  4YQD A;  2YY8 A;  4J3C A;  3N4K A;  2HA8 A;  3DCM X;  1VH0 A;  4XBO A;  4YQJ A;  4X3L A;  5D9F A;  4YQI A;  2QWV A;  3OII A;  4IG6 A;  1Z85 A;  4FAK A;  4YQ6 A;  1IPA A;  4YPY A;  1UAK A;  4YQQ A;  3OIN A;  4RG1 A;  4PZK A;  4MCB A;  4YQB A;  4JAK A;  4H3Y A;  4YQN A;  1UAL A;  4YQC A;  4YPZ A;  4X3M A;  4YPX A;  4YQ8 A;  2EGW A;  3BBE A;  4YQ3 A;  4YQ5 A;  1NS5 A;  2V3J A;  4YQ4 A;  3AIA A;  3NK7 A;  3L8U A;  3NK6 A;  1P9P A;  5FAI A;  1VHY A;  5CO4 A;  4MCD A;  3QUV A;  4JWF A;  4YQ0 A;  4YVG A;  4CNG A;  1OY5 A;  4JWH A;  4E8B A;  3OIJ A;  1UAM A;  3AXZ A;  4MCC A;  4YPW A;  4YQA A;  3IEF A;  4YVK A;  4L69 A;  3ILK A;  4H3Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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