1V6ZA

Crystal structure of tt1573 from thermus thermophilus
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
Knots found
sequence length
227
structure length
227
Chain Sequence
RPHRAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of TT1573 from Thermus thermophilus
rcsb
molecule tags Transferase
molecule keywords hypothetical protein TTHA0657
total genus 68
structure length 227
sequence length 227
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2003-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 1v6zA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1v6zA02
4YQBA 4YQIA 5GM8A 3DCMX 4YQ3A 3ONPA 4YQQA 4J3CA 4YPXA 2YY8A 1P9PA 1V2XA 2QWVA 1J85A 1O6DA 4YVKA 3KY7A 4YQLA 4YQJA 1UAJA 5FAIA 1NXZA 4YQ2A 4KDZA 3AXZA 4YQ8A 4YQ7A 4MCBA 1X7OA 2V3KA 3QUVA 4X3MA 3NK6A 5CO4A 3BBEA 4L69A 4CNDA 2NWAA 4YQAA 1MXIA 3OINA 3KNUA 3KW2A 1ZJRA 4RG1A 3O7BA 3IC6A 4E8BA 2O3AA 4YQ9A 3AIAA 4CNEA 2I6DA 4YQKA 4YVHA 4YVGA 1GZ0A 4YQ5A 1UAMA 1OY5A 4YQNA 4FAKA 1UAKA 2EGWA 4H3ZA 2HA8A 4IG6A 1VHYA 3NK7A 4YPZA 3GYQA 4YQRA 3E5YA 4MCDA 4JAKA 4MCCA 1UALA 3IEFA 4YQPA 1TO0A 4YQCA 4H3YA 4X3LA 3BBHA 4YQ0A 3N4JA 1NS5A 1Z85A 2QMMA 3OIIA 4YQSA 4YVJA 4PZKA 1VHKA 3N4KA 3KTYA 4YQ6A 3OIJA 2EGVA 4JALA 1IPAA 3AI9X 1K3RA 4CNGA 2Z0YA 4YPWA 4YQTA 4YVIA 2V3JA 4YQ4A 1VH0A 4XBOA 4CNFA 4KGNA 4YPYA 4YQDA 5GMBA 5GMCA 3BBDA 4YQGA 4YQ1A 4YQOA 1X7PA 5D9FA 2CX8A 3L8UA 3ILKA 1V6ZA
chains in the Genus database with same CATH superfamily
4YQBA 4IO9S 4YQIA 3PIOS 5GM8A 3DCMX 4YQ3A 3ONPA 3X1LB 4YQQA 1EUQA 5GAEW 4J3CA 4IOAS 4YPXA 2YY8A 1P9PA 1D6KA 2AE0X 2RE8A 1V2XA 2QWVA 1J85A 5HL7S 1O6DA 4JWFA 3KY7A 4YQLA 2ZJRS 1UAJA 4YQJA 5FAIA 1O0BA 4YVKA 1NXZA 4YQ2A 4KDZA 3AXZA 4YQ8A 4YQ7A 2PICA 4MCBA 5JVGS 1X7OA 2V3KA 3QUVA 4X3MA 4P2BA 5GAGW 3NK6A 5CO4A 3BBEA 4L69A 4CNDA 2NWAA 3AIIA 4JXXA 2PNWA 1MXIA 4JWGA 4YQAA 3OINA 3KNUA 5BNZA 3KW2A 1ZJRA 4RG1A 4U67S 4IOCS 3O7BA 3IC6A 5DM7S 3PIPS 2PJJA 5IZNA 4E8BA 2O3AA 4YQ9A 3AIAA 5DM6S 4WFBS 2GAEA 4CNEA 2I6DA 1QTQA 2ZJPS 4YQKA 4YVHA 4YVGA 1GZ0A 4YQ5A 1UAMA 4FMWA 1OY5A 1O0CA 4YQNA 4FAKA 1UAKA 1EXDA 1GTSA 2EGWA 5GAHW 2HA8A 4H3ZA 1VHYA 3W2WB 3NK7A 3GYQA 4IG6A 4YPZA 4YQRA 4JYZA 3CZBA 3E5YA 4MCDA 3DLLS 4JAKA 2RD2A 3J7ZV 1UALA 4MCCA 4WCES 3IEFA 4YQPA 1GTRA 1TO0A 1UDXA 2HZ7A 1DFUP 4H3YA 4X3LA 1FEUA 3BBHA 4JWHA 4YQCA 4YQ0A 3N4JA 3W2VB 1NS5A 1Z85A 2QMMA 3OIIA 5GADW 2G5DA 4YQSA 4YVJA 4PZKA 1NYLA 1VHKA 4WFNS 3N4KA 3KTYA 4YQ6A 1EUYA 3OIJA 2EGVA 4JXZA 4JALA 1IPAA 4H3SA 4WF9S 3AI9X 1K3RA 1QRSA 4CNGA 2Z0YA 4YPWA 4YQTA 4YVIA 1QRUA 1QRTA 2V3JA 4YQ4A 1VH0A 2PI8A 4XBOA 1B75A 4CNFA 2G6GA 4KGNA 5JVHS 4YPYA 4YQDA 5GMBA 3CF5S 2ZJQS 5GMCA 3BBDA 4WFAS 4YQGA 4UY88 4H4KA 4YQ1A 4YQOA 1X7PA 1ZJWA 5D9FA 4V194 2CX8A 3L8UA 3ILKA 1V6ZA 4JWJA
chains in the Genus database with same CATH topology
4YQBA 4YQIA 5GM8A 3DCMX 4YQ3A 3ONPA 4YQQA 4J3CA 4YPXA 2YY8A 1P9PA 1V2XA 2QWVA 1J85A 1O6DA 4JWFA 3KY7A 4YQLA 4YQJA 1UAJA 5FAIA 4YVKA 1NXZA 4YQ2A 4KDZA 3AXZA 4YQ8A 4YQ7A 4MCBA 1X7OA 2V3KA 3QUVA 4X3MA 3NK6A 5CO4A 3BBEA 4L69A 4CNDA 2NWAA 4JWGA 4YQAA 1MXIA 3OINA 3KNUA 3KW2A 1ZJRA 4RG1A 3O7BA 3IC6A 4E8BA 2O3AA 4YQ9A 3AIAA 4CNEA 2I6DA 4YQKA 4YVHA 4YVGA 1GZ0A 4YQ5A 1UAMA 4FMWA 1OY5A 4YQNA 4FAKA 1UAKA 2EGWA 4H3ZA 2HA8A 4IG6A 1VHYA 3NK7A 4YPZA 3GYQA 4YQRA 3E5YA 4MCDA 4JAKA 4MCCA 1UALA 3IEFA 4YQPA 1TO0A 4YQCA 4H3YA 4X3LA 3BBHA 4JWHA 4YQ0A 3N4JA 1NS5A 1Z85A 2QMMA 3OIIA 4YQSA 4YVJA 4PZKA 1VHKA 3N4KA 3KTYA 4YQ6A 3OIJA 2EGVA 4JALA 1IPAA 3AI9X 1K3RA 4CNGA 2Z0YA 4YPWA 4YQTA 4YVIA 2V3JA 4YQ4A 1VH0A 4XBOA 4CNFA 4KGNA 4YPYA 4YQDA 5GMBA 5GMCA 3BBDA 4YQGA 4YQ1A 4YQOA 1X7PA 5D9FA 2CX8A 3L8UA 3ILKA 1V6ZA 4JWJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQB A;  4YQI A;  5GM8 A;  3DCM X;  4YQ3 A;  3ONP A;  4YQQ A;  4J3C A;  4YPX A;  2YY8 A;  1P9P A;  1V2X A;  2QWV A;  1J85 A;  1O6D A;  4YVK A;  3KY7 A;  4YQL A;  4YQJ A;  1UAJ A;  5FAI A;  1NXZ A;  4YQ2 A;  4KDZ A;  3AXZ A;  4YQ8 A;  4YQ7 A;  4MCB A;  1X7O A;  2V3K A;  3QUV A;  4X3M A;  3NK6 A;  5CO4 A;  3BBE A;  4L69 A;  4CND A;  2NWA A;  4YQA A;  1MXI A;  3OIN A;  3KNU A;  3KW2 A;  1ZJR A;  4RG1 A;  3O7B A;  3IC6 A;  4E8B A;  2O3A A;  4YQ9 A;  3AIA A;  4CNE A;  2I6D A;  4YQK A;  4YVH A;  4YVG A;  1GZ0 A;  4YQ5 A;  1UAM A;  1OY5 A;  4YQN A;  4FAK A;  1UAK A;  2EGW A;  4H3Z A;  2HA8 A;  4IG6 A;  1VHY A;  3NK7 A;  4YPZ A;  3GYQ A;  4YQR A;  3E5Y A;  4MCD A;  4JAK A;  4MCC A;  1UAL A;  3IEF A;  4YQP A;  1TO0 A;  4YQC A;  4H3Y A;  4X3L A;  3BBH A;  4YQ0 A;  3N4J A;  1NS5 A;  1Z85 A;  2QMM A;  3OII A;  4YQS A;  4YVJ A;  4PZK A;  1VHK A;  3N4K A;  3KTY A;  4YQ6 A;  3OIJ A;  2EGV A;  4JAL A;  1IPA A;  3AI9 X;  1K3R A;  4CNG A;  2Z0Y A;  4YPW A;  4YQT A;  4YVI A;  2V3J A;  4YQ4 A;  1VH0 A;  4XBO A;  4CNF A;  4KGN A;  4YPY A;  4YQD A;  5GMB A;  5GMC A;  3BBD A;  4YQG A;  4YQ1 A;  4YQO A;  1X7P A;  5D9F A;  2CX8 A;  3L8U A;  3ILK A;  1V6Z A; 
#chains in the Genus database with same CATH topology
 4YQB A;  4IO9 S;  4YQI A;  3PIO S;  5GM8 A;  3DCM X;  4YQ3 A;  3ONP A;  3X1L B;  4YQQ A;  1EUQ A;  5GAE W;  4J3C A;  4IOA S;  4YPX A;  2YY8 A;  1P9P A;  1D6K A;  2AE0 X;  2RE8 A;  1V2X A;  2QWV A;  1J85 A;  5HL7 S;  1O6D A;  4JWF A;  3KY7 A;  4YQL A;  2ZJR S;  1UAJ A;  4YQJ A;  5FAI A;  1O0B A;  4YVK A;  1NXZ A;  4YQ2 A;  4KDZ A;  3AXZ A;  4YQ8 A;  4YQ7 A;  2PIC A;  4MCB A;  5JVG S;  1X7O A;  2V3K A;  3QUV A;  4X3M A;  4P2B A;  5GAG W;  3NK6 A;  5CO4 A;  3BBE A;  4L69 A;  4CND A;  2NWA A;  3AII A;  4JXX A;  2PNW A;  1MXI A;  4JWG A;  4YQA A;  3OIN A;  3KNU A;  5BNZ A;  3KW2 A;  1ZJR A;  4RG1 A;  4U67 S;  4IOC S;  3O7B A;  3IC6 A;  5DM7 S;  3PIP S;  2PJJ A;  5IZN A;  4E8B A;  2O3A A;  4YQ9 A;  3AIA A;  5DM6 S;  4WFB S;  2GAE A;  4CNE A;  2I6D A;  1QTQ A;  2ZJP S;  4YQK A;  4YVH A;  4YVG A;  1GZ0 A;  4YQ5 A;  1UAM A;  4FMW A;  1OY5 A;  1O0C A;  4YQN A;  4FAK A;  1UAK A;  1EXD A;  1GTS A;  2EGW A;  5GAH W;  2HA8 A;  4H3Z A;  1VHY A;  3W2W B;  3NK7 A;  3GYQ A;  4IG6 A;  4YPZ A;  4YQR A;  4JYZ A;  3CZB A;  3E5Y A;  4MCD A;  3DLL S;  4JAK A;  2RD2 A;  3J7Z V;  1UAL A;  4MCC A;  4WCE S;  3IEF A;  4YQP A;  1GTR A;  1TO0 A;  1UDX A;  2HZ7 A;  1DFU P;  4H3Y A;  4X3L A;  1FEU A;  3BBH A;  4JWH A;  4YQC A;  4YQ0 A;  3N4J A;  3W2V B;  1NS5 A;  1Z85 A;  2QMM A;  3OII A;  5GAD W;  2G5D A;  4YQS A;  4YVJ A;  4PZK A;  1NYL A;  1VHK A;  4WFN S;  3N4K A;  3KTY A;  4YQ6 A;  1EUY A;  3OIJ A;  2EGV A;  4JXZ A;  4JAL A;  1IPA A;  4H3S A;  4WF9 S;  3AI9 X;  1K3R A;  1QRS A;  4CNG A;  2Z0Y A;  4YPW A;  4YQT A;  4YVI A;  1QRU A;  1QRT A;  2V3J A;  4YQ4 A;  1VH0 A;  2PI8 A;  4XBO A;  1B75 A;  4CNF A;  2G6G A;  4KGN A;  5JVH S;  4YPY A;  4YQD A;  5GMB A;  3CF5 S;  2ZJQ S;  5GMC A;  3BBD A;  4WFA S;  4YQG A;  4UY8 8;  4H4K A;  4YQ1 A;  4YQO A;  1X7P A;  1ZJW A;  5D9F A;  4V19 4;  2CX8 A;  3L8U A;  3ILK A;  1V6Z A;  4JWJ A; 
#chains in the Genus database with same CATH homology
 4YQB A;  4YQI A;  5GM8 A;  3DCM X;  4YQ3 A;  3ONP A;  4YQQ A;  4J3C A;  4YPX A;  2YY8 A;  1P9P A;  1V2X A;  2QWV A;  1J85 A;  1O6D A;  4JWF A;  3KY7 A;  4YQL A;  4YQJ A;  1UAJ A;  5FAI A;  4YVK A;  1NXZ A;  4YQ2 A;  4KDZ A;  3AXZ A;  4YQ8 A;  4YQ7 A;  4MCB A;  1X7O A;  2V3K A;  3QUV A;  4X3M A;  3NK6 A;  5CO4 A;  3BBE A;  4L69 A;  4CND A;  2NWA A;  4JWG A;  4YQA A;  1MXI A;  3OIN A;  3KNU A;  3KW2 A;  1ZJR A;  4RG1 A;  3O7B A;  3IC6 A;  4E8B A;  2O3A A;  4YQ9 A;  3AIA A;  4CNE A;  2I6D A;  4YQK A;  4YVH A;  4YVG A;  1GZ0 A;  4YQ5 A;  1UAM A;  4FMW A;  1OY5 A;  4YQN A;  4FAK A;  1UAK A;  2EGW A;  4H3Z A;  2HA8 A;  4IG6 A;  1VHY A;  3NK7 A;  4YPZ A;  3GYQ A;  4YQR A;  3E5Y A;  4MCD A;  4JAK A;  4MCC A;  1UAL A;  3IEF A;  4YQP A;  1TO0 A;  4YQC A;  4H3Y A;  4X3L A;  3BBH A;  4JWH A;  4YQ0 A;  3N4J A;  1NS5 A;  1Z85 A;  2QMM A;  3OII A;  4YQS A;  4YVJ A;  4PZK A;  1VHK A;  3N4K A;  3KTY A;  4YQ6 A;  3OIJ A;  2EGV A;  4JAL A;  1IPA A;  3AI9 X;  1K3R A;  4CNG A;  2Z0Y A;  4YPW A;  4YQT A;  4YVI A;  2V3J A;  4YQ4 A;  1VH0 A;  4XBO A;  4CNF A;  4KGN A;  4YPY A;  4YQD A;  5GMB A;  5GMC A;  3BBD A;  4YQG A;  4YQ1 A;  4YQO A;  1X7P A;  5D9F A;  2CX8 A;  3L8U A;  3ILK A;  1V6Z A;  4JWJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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