1V6ZA

Crystal structure of tt1573 from thermus thermophilus
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
Knots found
sequence length
227
structure length
227
Chain Sequence
b'RPHRAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein TTHA0657
publication title Crystal structure of TT1573 from Thermus thermophilus
rcsb
molecule tags Transferase
total genus 68
structure length 227
sequence length 227
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2003-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 1v6zA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1v6zA02
4KDZA 2O3AA 2QWVA 3NK6A 4YQRA 4CNEA 3OIJA 1VH0A 3BBHA 4YQIA 2HA8A 3O7BA 4MCBA 2YY8A 3KY7A 4E8BA 1X7OA 3OINA 4MCCA 3L8UA 4YQQA 1V6ZA 4YQPA 1UALA 4YQCA 3DCMX 4YPYA 3BBEA 4YQLA 3NK7A 2EGWA 3AI9X 4YQ4A 5CO4A 4YQOA 4YVKA 3N4KA 2EGVA 3AIAA 1Z85A 1O6DA 3ILKA 1MXIA 1UAJA 3ONPA 1OY5A 4YPXA 5D9FA 4FAKA 5GM8A 4YQSA 4YQ0A 4KGNA 3N4JA 4YVHA 4YQTA 4YQ2A 4YQBA 4H3ZA 4YPWA 5GMBA 4YVJA 2NWAA 4YQ8A 4X3MA 4J3CA 1VHYA 4YQ1A 4CNGA 4YQGA 3KTYA 1UAKA 4L69A 3IEFA 4PZKA 4YQDA 1UAMA 1VHKA 2CX8A 4YVIA 4JALA 1IPAA 1GZ0A 2I6DA 4YQAA 2Z0YA 3OIIA 3E5YA 4YQ7A 4YVGA 2V3JA 4YQNA 4YQ9A 1NS5A 4YQJA 1NXZA 4CNDA 4IG6A 1J85A 4X3LA 3AXZA 4XBOA 1X7PA 4CNFA 4YQ5A 3KNUA 3BBDA 4YQKA 3IC6A 4RG1A 1ZJRA 3GYQA 3KW2A 1P9PA 5GMCA 5FAIA 4MCDA 4YQ3A 4H3YA 1V2XA 1K3RA 4JAKA 4YPZA 2QMMA 2V3KA 4YQ6A 1TO0A 3QUVA
chains in the Genus database with same CATH superfamily
4KDZA 1UDXA 2GAEA 2O3AA 1QTQA 2QWVA 3NK6A 4YQRA 5JVGS 4CNEA 2ZJRS 3OIJA 1VH0A 3BBHA 4YQIA 2HA8A 1DFUP 3O7BA 4WF9S 4MCBA 2YY8A 1GTSA 3J7ZV 1EUYA 5DM7S 3KY7A 4E8BA 4JWGA 1GTRA 1X7OA 3OINA 4MCCA 1O0CA 3L8UA 5IZNA 4YQQA 1V6ZA 4YQPA 2PICA 1UALA 4YQCA 3DCMX 4YPYA 1ZJWA 3BBEA 1QRUA 4YQLA 3NK7A 2EGWA 2G6GA 2PI8A 3AI9X 4YQ4A 5CO4A 4YQOA 4YVKA 3N4KA 2EGVA 2ZJQS 3AIAA 1Z85A 1O6DA 4JYZA 3PIPS 4WFNS 3ILKA 1MXIA 1UAJA 2PJJA 3ONPA 1OY5A 4YPXA 5D9FA 4FAKA 5GM8A 3W2WB 4YQSA 4KGNA 4FMWA 4V194 4YQ0A 3N4JA 4YVHA 4YQTA 4YQ2A 4UY88 4YQBA 4H3ZA 3X1LB 4YPWA 3CZBA 1EUQA 1EXDA 5GMBA 4IO9S 5GADW 3CF5S 1O0BA 4H4KA 4YVJA 2RE8A 2NWAA 4YQ8A 4X3MA 4J3CA 1VHYA 4YQ1A 4CNGA 4YQGA 4P2BA 3KTYA 2HZ7A 1UAKA 2PNWA 4L69A 5JVHS 3IEFA 4PZKA 4JWJA 5HL7S 1UAMA 4YQDA 1VHKA 2CX8A 4YVIA 4JALA 1IPAA 2AE0X 1NYLA 1GZ0A 2I6DA 4YQAA 4U67S 4JWFA 2Z0YA 3PIOS 3OIIA 4WCES 3E5YA 3AIIA 5GAEW 1D6KA 4YQ7A 2RD2A 1QRTA 2G5DA 4YVGA 2V3JA 4YQNA 4H3SA 5DM6S 5GAHW 1NS5A 4YQJA 1NXZA 4CNDA 4YQ9A 1B75A 4IG6A 1J85A 4X3LA 3AXZA 4XBOA 1X7PA 4CNFA 4YQ5A 3KNUA 3BBDA 4YQKA 3DLLS 3IC6A 4RG1A 1ZJRA 3GYQA 4IOAS 1FEUA 3KW2A 4WFAS 4JXZA 1P9PA 5FAIA 5BNZA 5GMCA 4MCDA 4YQ3A 4H3YA 4JWHA 1V2XA 4IOCS 1K3RA 4JAKA 1QRSA 3W2VB 2ZJPS 4JXXA 4YPZA 2QMMA 2V3KA 4YQ6A 1TO0A 4WFBS 3QUVA 5GAGW
chains in the Genus database with same CATH topology
4KDZA 2O3AA 2QWVA 3NK6A 4YQRA 4CNEA 3OIJA 1VH0A 3BBHA 4YQIA 2HA8A 3O7BA 4MCBA 2YY8A 3KY7A 4E8BA 4JWGA 1X7OA 3OINA 4MCCA 3L8UA 4YQQA 1V6ZA 4YQPA 1UALA 4YQCA 3DCMX 4YPYA 3BBEA 4YQLA 3NK7A 2EGWA 3AI9X 4YQ4A 5CO4A 4YQOA 4YVKA 3N4KA 2EGVA 3AIAA 1Z85A 1O6DA 3ILKA 1MXIA 1UAJA 3ONPA 1OY5A 4YPXA 5D9FA 4FAKA 5GM8A 4YQSA 4YQ0A 4KGNA 4FMWA 3N4JA 4YVHA 4YQTA 4YQ2A 4YQBA 4H3ZA 4YPWA 5GMBA 4YVJA 2NWAA 4YQ8A 4X3MA 4J3CA 1VHYA 4YQ1A 4CNGA 4YQGA 3KTYA 1UAKA 4L69A 3IEFA 4PZKA 4JWJA 4YQDA 1UAMA 1VHKA 2CX8A 4YVIA 4JALA 1IPAA 1GZ0A 2I6DA 4YQAA 4JWFA 2Z0YA 3OIIA 3E5YA 4YQ7A 4YVGA 2V3JA 4YQNA 4YQ9A 1NS5A 4YQJA 1NXZA 4CNDA 4IG6A 1J85A 4X3LA 3AXZA 4XBOA 1X7PA 4CNFA 4YQ5A 3KNUA 3BBDA 4YQKA 3IC6A 4RG1A 1ZJRA 3GYQA 3KW2A 1P9PA 5GMCA 5FAIA 4MCDA 4YQ3A 4H3YA 4JWHA 1V2XA 1K3RA 4JAKA 4YPZA 2QMMA 2V3KA 4YQ6A 1TO0A 3QUVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KDZ A;  2O3A A;  2QWV A;  3NK6 A;  4YQR A;  4CNE A;  3OIJ A;  1VH0 A;  3BBH A;  4YQI A;  2HA8 A;  3O7B A;  4MCB A;  2YY8 A;  3KY7 A;  4E8B A;  1X7O A;  3OIN A;  4MCC A;  3L8U A;  4YQQ A;  1V6Z A;  4YQP A;  1UAL A;  4YQC A;  3DCM X;  4YPY A;  3BBE A;  4YQL A;  3NK7 A;  2EGW A;  3AI9 X;  4YQ4 A;  5CO4 A;  4YQO A;  4YVK A;  3N4K A;  2EGV A;  3AIA A;  1Z85 A;  1O6D A;  3ILK A;  1MXI A;  1UAJ A;  3ONP A;  1OY5 A;  4YPX A;  5D9F A;  4FAK A;  5GM8 A;  4YQS A;  4YQ0 A;  4KGN A;  3N4J A;  4YVH A;  4YQT A;  4YQ2 A;  4YQB A;  4H3Z A;  4YPW A;  5GMB A;  4YVJ A;  2NWA A;  4YQ8 A;  4X3M A;  4J3C A;  1VHY A;  4YQ1 A;  4CNG A;  4YQG A;  3KTY A;  1UAK A;  4L69 A;  3IEF A;  4PZK A;  4YQD A;  1UAM A;  1VHK A;  2CX8 A;  4YVI A;  4JAL A;  1IPA A;  1GZ0 A;  2I6D A;  4YQA A;  2Z0Y A;  3OII A;  3E5Y A;  4YQ7 A;  4YVG A;  2V3J A;  4YQN A;  4YQ9 A;  1NS5 A;  4YQJ A;  1NXZ A;  4CND A;  4IG6 A;  1J85 A;  4X3L A;  3AXZ A;  4XBO A;  1X7P A;  4CNF A;  4YQ5 A;  3KNU A;  3BBD A;  4YQK A;  3IC6 A;  4RG1 A;  1ZJR A;  3GYQ A;  3KW2 A;  1P9P A;  5GMC A;  5FAI A;  4MCD A;  4YQ3 A;  4H3Y A;  1V2X A;  1K3R A;  4JAK A;  4YPZ A;  2QMM A;  2V3K A;  4YQ6 A;  1TO0 A;  3QUV A; 
#chains in the Genus database with same CATH topology
 4KDZ A;  1UDX A;  2GAE A;  2O3A A;  1QTQ A;  2QWV A;  3NK6 A;  4YQR A;  5JVG S;  4CNE A;  2ZJR S;  3OIJ A;  1VH0 A;  3BBH A;  4YQI A;  2HA8 A;  1DFU P;  3O7B A;  4WF9 S;  4MCB A;  2YY8 A;  1GTS A;  3J7Z V;  1EUY A;  5DM7 S;  3KY7 A;  4E8B A;  4JWG A;  1GTR A;  1X7O A;  3OIN A;  4MCC A;  1O0C A;  3L8U A;  5IZN A;  4YQQ A;  1V6Z A;  4YQP A;  2PIC A;  1UAL A;  4YQC A;  3DCM X;  4YPY A;  1ZJW A;  3BBE A;  1QRU A;  4YQL A;  3NK7 A;  2EGW A;  2G6G A;  2PI8 A;  3AI9 X;  4YQ4 A;  5CO4 A;  4YQO A;  4YVK A;  3N4K A;  2EGV A;  2ZJQ S;  3AIA A;  1Z85 A;  1O6D A;  4JYZ A;  3PIP S;  4WFN S;  3ILK A;  1MXI A;  1UAJ A;  2PJJ A;  3ONP A;  1OY5 A;  4YPX A;  5D9F A;  4FAK A;  5GM8 A;  3W2W B;  4YQS A;  4KGN A;  4FMW A;  4V19 4;  4YQ0 A;  3N4J A;  4YVH A;  4YQT A;  4YQ2 A;  4UY8 8;  4YQB A;  4H3Z A;  3X1L B;  4YPW A;  3CZB A;  1EUQ A;  1EXD A;  5GMB A;  4IO9 S;  5GAD W;  3CF5 S;  1O0B A;  4H4K A;  4YVJ A;  2RE8 A;  2NWA A;  4YQ8 A;  4X3M A;  4J3C A;  1VHY A;  4YQ1 A;  4CNG A;  4YQG A;  4P2B A;  3KTY A;  2HZ7 A;  1UAK A;  2PNW A;  4L69 A;  5JVH S;  3IEF A;  4PZK A;  4JWJ A;  5HL7 S;  1UAM A;  4YQD A;  1VHK A;  2CX8 A;  4YVI A;  4JAL A;  1IPA A;  2AE0 X;  1NYL A;  1GZ0 A;  2I6D A;  4YQA A;  4U67 S;  4JWF A;  2Z0Y A;  3PIO S;  3OII A;  4WCE S;  3E5Y A;  3AII A;  5GAE W;  1D6K A;  4YQ7 A;  2RD2 A;  1QRT A;  2G5D A;  4YVG A;  2V3J A;  4YQN A;  4H3S A;  5DM6 S;  5GAH W;  1NS5 A;  4YQJ A;  1NXZ A;  4CND A;  4YQ9 A;  1B75 A;  4IG6 A;  1J85 A;  4X3L A;  3AXZ A;  4XBO A;  1X7P A;  4CNF A;  4YQ5 A;  3KNU A;  3BBD A;  4YQK A;  3DLL S;  3IC6 A;  4RG1 A;  1ZJR A;  3GYQ A;  4IOA S;  1FEU A;  3KW2 A;  4WFA S;  4JXZ A;  1P9P A;  5FAI A;  5BNZ A;  5GMC A;  4MCD A;  4YQ3 A;  4H3Y A;  4JWH A;  1V2X A;  4IOC S;  1K3R A;  4JAK A;  1QRS A;  3W2V B;  2ZJP S;  4JXX A;  4YPZ A;  2QMM A;  2V3K A;  4YQ6 A;  1TO0 A;  4WFB S;  3QUV A;  5GAG W; 
#chains in the Genus database with same CATH homology
 4KDZ A;  2O3A A;  2QWV A;  3NK6 A;  4YQR A;  4CNE A;  3OIJ A;  1VH0 A;  3BBH A;  4YQI A;  2HA8 A;  3O7B A;  4MCB A;  2YY8 A;  3KY7 A;  4E8B A;  4JWG A;  1X7O A;  3OIN A;  4MCC A;  3L8U A;  4YQQ A;  1V6Z A;  4YQP A;  1UAL A;  4YQC A;  3DCM X;  4YPY A;  3BBE A;  4YQL A;  3NK7 A;  2EGW A;  3AI9 X;  4YQ4 A;  5CO4 A;  4YQO A;  4YVK A;  3N4K A;  2EGV A;  3AIA A;  1Z85 A;  1O6D A;  3ILK A;  1MXI A;  1UAJ A;  3ONP A;  1OY5 A;  4YPX A;  5D9F A;  4FAK A;  5GM8 A;  4YQS A;  4YQ0 A;  4KGN A;  4FMW A;  3N4J A;  4YVH A;  4YQT A;  4YQ2 A;  4YQB A;  4H3Z A;  4YPW A;  5GMB A;  4YVJ A;  2NWA A;  4YQ8 A;  4X3M A;  4J3C A;  1VHY A;  4YQ1 A;  4CNG A;  4YQG A;  3KTY A;  1UAK A;  4L69 A;  3IEF A;  4PZK A;  4JWJ A;  4YQD A;  1UAM A;  1VHK A;  2CX8 A;  4YVI A;  4JAL A;  1IPA A;  1GZ0 A;  2I6D A;  4YQA A;  4JWF A;  2Z0Y A;  3OII A;  3E5Y A;  4YQ7 A;  4YVG A;  2V3J A;  4YQN A;  4YQ9 A;  1NS5 A;  4YQJ A;  1NXZ A;  4CND A;  4IG6 A;  1J85 A;  4X3L A;  3AXZ A;  4XBO A;  1X7P A;  4CNF A;  4YQ5 A;  3KNU A;  3BBD A;  4YQK A;  3IC6 A;  4RG1 A;  1ZJR A;  3GYQ A;  3KW2 A;  1P9P A;  5GMC A;  5FAI A;  4MCD A;  4YQ3 A;  4H3Y A;  4JWH A;  1V2X A;  1K3R A;  4JAK A;  4YPZ A;  2QMM A;  2V3K A;  4YQ6 A;  1TO0 A;  3QUV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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