1V7OA

Alanyl-trna synthetase editing domain homologue protein from pyrococcus horikoshii
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
155
structure length
155
Chain Sequence
MYSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLELEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Pyrococcus horikoshii
publication title Molecular basis of alanine discrimination in editing site
pubmed doi rcsb
molecule keywords alanyl-tRNA synthetase
total genus 43
structure length 155
sequence length 155
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-12-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.54.20 Alpha Beta 2-Layer Sandwich Replication Terminator Protein; Chain A, domain 2 Replication Terminator Protein; Chain A, domain 2 1v7oA02
3.30.980.10 Alpha Beta 2-Layer Sandwich Threonyl-tRNA Synthetase; Chain A, domain 2 Threonyl-trna Synthetase; Chain A, domain 2 1v7oA01
1TKGA 3WQZA 2ZZEA 1QF6A 1TJEA 1TKYA 2ZTGA 1V4PA 1WNUA 3RFNA 1V7OA 2ZZFA 1NYQA 1NYRA 2E1BA 1TKEA 3RHUA 1WXOA 3KEWA 2ZZGA
chains in the Genus database with same CATH superfamily
4A0BA 3I8CA 4AREA 2IUSA 2I06A 1QF6A 3I7KA 3ZX5A 4ARFA 4A11A 3ZWDA 4XR2A 2ZZFA 1NYQA 4XR0A 1ECRA 3ZWKA 3RHUA 1WXOA 3I8EA 3KEWA 4A0AA 2ZZGA 4XR1A 3EI2A 1TJEA 3I7LA 1V4PA 3ZTYA 2B5MA 2Y6IA 3EI1A 4AR8A 1NYRA 2Y50A 3I89A 4E5ZA 2ZZEA 2Y3UA 4CI2A 1TKYA 2ZTGA 1WZCA 3E0CA 1V7OA 4XR3A 4A09A 3ZX4A 2IUTA 2HYEA 3ZW7A 1TKEA 4CI1A 3I7NA 4AR1A 3EI3A 1TKGA 3WQZA 4E54A 4AR9A 1XVIA 3I7PA 2I05A 3I7HA 5FQDA 1WNUA 3EI4A 3RFNA 2IUUA 4CI3A 2ZOSA 4TZ4A 3ZUPA 2EWJA 3ZU6A 2E1BA 3I7OA 3ZTWA 2B5LA 4A08A
chains in the Genus database with same CATH topology
4E5ZA 4A0BA 3EI3A 3I8CA 1TKGA 4AREA 3WQZA 2IUSA 4XR1A 4AR1A 2ZZEA 3EI2A 2Y3UA 2I06A 4E54A 4CI2A 4A08A 1QF6A 1TJEA 1TKYA 3I7KA 4AR9A 2ZTGA 3I7LA 4ARFA 4A11A 1V4PA 4A0AA 3I7PA 2I05A 3I7HA 5FQDA 2B5MA 1WNUA 4XR2A 3EI4A 3RFNA 3E0CA 1V7OA 2IUUA 4CI3A 2ZZFA 4XR3A 4TZ4A 4A09A 2Y6IA 1NYQA 4XR0A 2EWJA 2IUTA 1ECRA 2HYEA 3EI1A 4AR8A 1NYRA 2E1BA 1TKEA 2Y50A 3RHUA 3I7OA 1WXOA 3I8EA 3I89A 3I7NA 3KEWA 4CI1A 2B5LA 2ZZGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TKG A;  3WQZ A;  2ZZE A;  1QF6 A;  1TJE A;  1TKY A;  2ZTG A;  1V4P A;  1WNU A;  3RFN A;  1V7O A;  2ZZF A;  1NYQ A;  1NYR A;  2E1B A;  1TKE A;  3RHU A;  1WXO A;  3KEW A;  2ZZG A; 
#chains in the Genus database with same CATH topology
 4A0B A;  3I8C A;  4ARE A;  2IUS A;  2I06 A;  1QF6 A;  3I7K A;  3ZX5 A;  4ARF A;  4A11 A;  3ZWD A;  4XR2 A;  2ZZF A;  1NYQ A;  4XR0 A;  1ECR A;  3ZWK A;  3RHU A;  1WXO A;  3I8E A;  3KEW A;  4A0A A;  2ZZG A;  4XR1 A;  3EI2 A;  1TJE A;  3I7L A;  1V4P A;  3ZTY A;  2B5M A;  2Y6I A;  3EI1 A;  4AR8 A;  1NYR A;  2Y50 A;  3I89 A;  4E5Z A;  2ZZE A;  2Y3U A;  4CI2 A;  1TKY A;  2ZTG A;  1WZC A;  3E0C A;  1V7O A;  4XR3 A;  4A09 A;  3ZX4 A;  2IUT A;  2HYE A;  3ZW7 A;  1TKE A;  4CI1 A;  3I7N A;  4AR1 A;  3EI3 A;  1TKG A;  3WQZ A;  4E54 A;  4AR9 A;  1XVI A;  3I7P A;  2I05 A;  3I7H A;  5FQD A;  1WNU A;  3EI4 A;  3RFN A;  2IUU A;  4CI3 A;  2ZOS A;  4TZ4 A;  3ZUP A;  2EWJ A;  3ZU6 A;  2E1B A;  3I7O A;  3ZTW A;  2B5L A;  4A08 A; 
#chains in the Genus database with same CATH homology
 4E5Z A;  4A0B A;  3EI3 A;  3I8C A;  1TKG A;  4ARE A;  3WQZ A;  2IUS A;  4XR1 A;  4AR1 A;  2ZZE A;  3EI2 A;  2Y3U A;  2I06 A;  4E54 A;  4CI2 A;  4A08 A;  1QF6 A;  1TJE A;  1TKY A;  3I7K A;  4AR9 A;  2ZTG A;  3I7L A;  4ARF A;  4A11 A;  1V4P A;  4A0A A;  3I7P A;  2I05 A;  3I7H A;  5FQD A;  2B5M A;  1WNU A;  4XR2 A;  3EI4 A;  3RFN A;  3E0C A;  1V7O A;  2IUU A;  4CI3 A;  2ZZF A;  4XR3 A;  4TZ4 A;  4A09 A;  2Y6I A;  1NYQ A;  4XR0 A;  2EWJ A;  2IUT A;  1ECR A;  2HYE A;  3EI1 A;  4AR8 A;  1NYR A;  2E1B A;  1TKE A;  2Y50 A;  3RHU A;  3I7O A;  1WXO A;  3I8E A;  3I89 A;  3I7N A;  3KEW A;  4CI1 A;  2B5L A;  2ZZG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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